| Literature DB >> 34068482 |
Isabel Castro1, M Luisa Calatayud1, Marta Orts-Arroyo1, Nicolás Moliner1, Nadia Marino2, Francesc Lloret1, Rafael Ruiz-García1, Giovanni De Munno2, Miguel Julve1.
Abstract
Two novel copper(II) complexes of formulasEntities:
Keywords: coordination polymers; copper; crystal structure; inverse coordination chemistry; magnetic properties; oxalato; polynuclear complexes; pyrazole
Year: 2021 PMID: 34068482 PMCID: PMC8126003 DOI: 10.3390/molecules26092792
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Scheme 1Coordination modes of the oxalate dianion in its metal complexes.
Summary of crystal data and structure refinement for 1 and 2.
| Compound | 1 | 2 |
|---|---|---|
| CCDC number | 2076622 | 2076621 |
| Formula | C26H36Cl2Cu2N12O12 | C102H176Cl6Cu6N32O44 |
| Fw | 906.65 | 3148.68 |
| Crystal system | Monoclinic | Monoclinic |
| Space group | ||
| 12.3020(3) | 15.3910(14) | |
| 23.0520(6) | 30.496(3) | |
| 13.6840(2) | 17.1782(17) | |
| α/° | 90 | 90 |
| β/° | 95.1130(13) | 113.241(4) |
| γ/° | 90 | 90 |
| 3865.15(15) | 7408.6(12) | |
|
| 4 | 2 |
| 1.558 | 1.411 | |
| 293(2) | 293(2) | |
| 1.310 | 1.039 | |
| 1856 | 3280 | |
| Refl. Collected | 8741 | 116,008 |
| Refl. indep. [ | 4430 [0.0215] | 15,028 [0.0789] |
| Refl. obs. [ | 10,171 | 10,171 |
| Goodness-of-fit on | 1.059 | 1.031 |
| 0.0360 (0.0523) | 0.0489 (0.0827) | |
| 0.0978 (0.1031) | 0.1246 (0.1432) | |
| Δρmax, min/e Å−3 | 0.485 and −0.433 | 0.653 and −0.566 |
aR1 = ∑||Fo| − |Fc||/∑|Fo|. b wR2 = {∑w(Fo2 − Fc2)2/∑[w(Fo2)2}1/2 and w = 1/[ σ 2(Fo)2 + (mP)2 + nP] with P = (Fo2 + 2Fc2)/3, m = 0.0637 (1) and 0.0688 (2), and n = 0.0000 (1) and 4.1923 (2).
Figure 1(a) Perspective view of a fragment of the cationic copper(II) chain of 1 with the atom-numbering scheme of the donor set at each copper site [symmetry code: (a) 1 − x, − y, − z; (b) 1 − x, y, 1/2 − z]. Hydrogen atoms are omitted for clarity. Selected bond lengths (Å): Cu(1)–N(2) = 2.011(2), Cu(1)–N(21) = 2.045(2), Cu(1)–O(1) = 2.3766(14), Cu(2)–N(22) = 1.964(2), Cu(2)–O(2) = 1.9585(14), and Cu(2)–O(1P) = 2.496(4) (data from Table S1); (b,c) projection views of the inverse oxalato-centered copper(II) chain of branch-type topology along the crystallographic a and c axes, respectively. The weak axial coordinative bonds with the perchlorate anions are depicted by black dotted lines. The intramolecular Cu···Cu separations through the µ3-ox-κ2O1,O2:κO2′:κO1′ centroligands within the vertex-shared triangular copper(II) entities are evidenced by thick yellow solid lines. The two-fold symmetry related central copper(II) units along the meso-helical chain are shown in different colors for clarity.
Figure 2(a) View of the unit cell of 1 with the atom-numbering scheme of selected atoms [symmetry code: (a) 1 − x, − y, − z; (b) 1 − x, y, 1/2 − z; (d) 3/2 − x, 1/2 − y, − z]. Selected hydrogen bond distances (Å): N(11)–H(11)···O(2) = 2.807(2) Å, N(12)–H(12)···O(3P) = 2.951(3), and N(1)–H(1)···O(2Pc) = 2.957(3) (data from Table S2). The C–C and C–O bonds from oxalate are depicted by black sticks to follow the chain development. The intrachain N–H···O hydrogen bonds between the pyrazole and the oxalate ligands or the perchlorate anions are depicted by black dotted lines, while the intra- and interchain C–H···π type interactions between the neighboring pyrazole ligands are depicted by thick black and gray dashed lines, respectively; (b) projection view of the stacking of the cationic copper(II) chains along the crystallographic a axis [symmetry code: (a) 1 − x, − y, − z; (c) 1/2 − x, 1/2 − y, − z; (d) 3/2 − x, 1/2 − y, − z]. The adjacent layers are shown in different colors for clarity. Shortest intra- and interchain separations (Å): Cu(1)···Cu(2) = 5.9493(3), Cu(1)···Cu(1b) = 6.8420(1), Cu(2)···Cu(2c) = 8.9641(2), Cu(1)···Cu(2c) = 9.4934(3), Cu(2)···Cu(2d) = 9.7651(2), and Cu(1)···Cu(2d) = 9.8806(3); (c) perspective view of the crystal packing along the crystallographic c axis, showing the hydrogen-bonded supramoleculr 3D network of cationic copper(II) chains. The intrachain N–H···O and interchain C–H···O interactions between the pyrazole and the oxalate ligands or the perchlorate anions are indicated by black and gray dotted lines, respectively.
Figure 3(a) Perspective view of the cationic hexacopper(II) complex of 2 with the atom numbering of the donor set at each copper site [symmetry code: (a) − x, 2 − y, − z]. Hydrogen atoms are omitted for clarity. Selected bond lengths (Å): Cu(1)–N(2) = 1.988(3), Cu(1)–N(21) = 1.975(2), Cu(2)–N(22) = 1.996(3), Cu(2)–N(23) = 1.963(3), Cu(3)–N(24) = 1.997(3), Cu(3)–N(25) = 2.030(3), Cu(3)–N(26) = 1.984(3), Cu(3)–N(27) = 2.004(3), Cu(1)–O(1) = 1.994(2), Cu(1)–O(2) = 2.015(2), Cu(2)–O(3) = 1.948(2), Cu(2)–O(4) = 1.994(2), Cu(1)–O(6) = 2.341(2), Cu(3)–O(5) = 2.256(2), Cu(2)–O(1w) = 2.432(3), Cu(2)–O(1P) = 2.851(11), and Cu(1)–O(3Pa) = 2.808(7) (data from Table S3); (b) projection view of the inverse oxalato-centered hexacopper(II) skeleton of branch-type topology with the atom numbering scheme of selected atoms, showing the two perchlorate anions acting as additional linkers. The weak axial coordinative bonds with the perchlorate anions are depicted by dashed lines. The intramolecular copper-copper separations through the µ3-ox-κ2O1,O2:κO2′:κO1′ centroligand within the two triangular copper(II) entities are evidenced by thick yellow solid lines; (c,d) space-filling model representation of the S-shaped hexacopper(II) capsule including and excluding the two encapsulated perchlorate anions, respectively. The two centrosymmetrically-related triangular copper(II) entities are depicted in dark and pale gray colors for clarity.
Figure 4(a) View of the unit cell of 2 with the atom numbering of selected atoms [symmetry code: (a) − x, 2 − y, − z; (b) 1 − x, 2 − y, − z; (c) 1 + x, y, z; (d) 1 − x, 2 − y, 1 − z]. Selected hydrogen bond distances (Å): N(15)–H(15)···O(2P) = 3.065(5), N(17)–H(17)···O(3w) = 2.600(9), N(13)–H(13)···O(4w) = 2.785(5), N(14)–H(14)···O(2w) = 2.828(4), N(11)–H(11)···O(3) = 2.809(3), N(16)–H(16)···O(4) = 2.863(3), N(12)–H(12)···O(2) = 3.345(3), O(2w)···O(6) = 2.893(4), O(1w)···O(5Pd) = 3.008(8), O(4w)···O(12Pb) = 2.921(16), O(4w)···O(1P) = 3.124(15), O(3w)···O(8P) = 3.216(9), C(6)–H(6C)···O(1) = 3.100(5), C(27e)–H(27e)···O(11P) = 3.36(2), and C(22a)–H(22a)···O(9P) = 3.467(8) (data from Table S4). The C–C and C–O bonds from oxalate are depicted by black sticks to follow the hexanuclear development. The N–H···Ow, N–H···O, and Ow–H···O hydrogen bonds involving the pyrazole ligands, the perchlorate anions, and the water molecules of crystallization are depicted by black dotted lines, while the C–H···O type contacts involving the pyrazole ligands and the perchlorate anions are depicted by gray dotted lines; (b) projection views of neighboring hexanuclear entities along the crystallographic a axis with the atom numbering of selected atoms [symmetry code: (e) 1 − x, 1/2 + y, 1/2 − z; (f) − x, 1/2 + y, 1/2 − z]. The adjacent hexanuclear entities are shown in different colors for clarity. Shortest intra- and intermolecular separations (Å): Cu(1)···Cu(2) = 5.419(1), Cu(2)···Cu(3) = 5.703(1), Cu(1)···Cu(3) = 7.140(1), Cu(1)···Cu(1a) = 5.225(1), Cu(1)···Cu(3f) = 8.846(1), Cu(3a)···Cu(3f) = 9.384(1), Cu(3a)···Cu(2b) = 11.430(1), and Cu(2)···Cu(2b) = 11.616(1); (c) projection view of the layer stacking of hexanuclear entities along the crystallographic c axis. The adjacent layers are shown in different colors for clarity; (d) perspective view of the crystal packing along the crystallographic a axis.
Figure 5Temperature dependence of χMT for 1 (◯). The inset shows a detail of the low-temperature region. The solid lines correspond to the best-fit curves through Equation (1) (see text).
Figure 6Temperature dependence of χMT for 2 (◯). The inset shows a detail of the low-temperature domain. The solid line corresponds to the best-fit curve through Equation (2) (see text).
Scheme 2Magnetic coupling model for 1 (a) and 2 (b).
Scheme 3Chemical structures of the inverse copper(II) compounds with oxalato as centroligand and pyrazole and its polymethyl-substituted derivatives as terminal ligands: triangular-based branch-type chain and hexanuclear compounds (1 and 2), asymmetric zig-zag chains (4), symmetric dinuclear complexes (5a/5b), and rectangular-based alternating sheet-like compounds (6). The Werner-type mononuclear complex (3) has been included for completeness.
Selected magneto-structural data for oxalato-centered inverse copper(II) complexes with pyrazole and polymethyl-substituted derivatives as peripheral ligands.
| Compound a | Coordination Mode | Ref. | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
| µ3- | 1.959 | 2.377 | 0.418 | 6.09 | 85.7 | 147.7 | 21.9 | 5.949 | −0.42 | This work |
|
| µ3 | 1.948 | 2.257 | 0.309 | 13.9 | 77.5 | 126.5 | 19.0 | 5.418 | n.a. | This work |
|
| µ- | 1.950 | 2.416 | 0.466 | 5.8 | 81.5 | 177.0 | 20.2 | 6.300 | −0.74 | [ |
|
| µ | 1.976 | 2.122 | 0.146 | 114.9 | 2.0 | −129 | [ | |||
|
| µ | 1.973 | 2.110 | 0.137 | 114.4 | 2.5 | −161 | [ | |||
|
| µ4- | 1.959 | 2.340 | 0.381 | 86.0 | 0 | 126.4 | 19.3 | 4.237 | 0 | [ |
| µ- | 1.984 | 2.8 | 0 | 5.176 | −312 |
a Compound notation: {[Cu(4-Hmpz)4][Cu(4-Hmpz)2(µ3-ox-κ2O1,O2:κO2′:κO1′)](ClO4)2} (1); {[Cu(3,4,5-Htmpz)4]2[Cu(3,4,5-Htmpz)2(µ3-ox-κ2O1,O2:κ2′:κO1′)(H2O)(ClO4)]2[Cu2(3,4,5-Htmpz)4(µ-ox-κ2O1,O2:κ2O2′,O1′)]}(ClO4)4·6H2O (2); [Cu(3-Hmpz)2(µ-ox-κ2O1,O2:κO1′)] (4); [Cu2(3,5-Hdmpz)6(µ-ox-κ2O1,O2:κ2′,O1′)](ClO4)2·2H2O (5a); [Cu2(3,4,5-Htmpz)6(µ-ox-κ2O1,O2:κ2O2′,O1′)](ClO4)2·2H2O (5b); {[Cu(Hpz)(µ4-ox-κO1:κ2O1,O2:κO2′:κ2O2′,O1′)][Cu(Hpz)(µ-ox-κ2O1,O2:κ2O2′,O1′)]} (6) (see Scheme 3). b Average values of the equatorial Cu–O bond distances. c Values of the axial Cu–O interactions. d Values of the difference between the axial and equatorial Cu–O bond lengths (ΔR = R’ − R). e Values of the dihedral angle between the mean equatorial plane of the copper atom and the mean oxalato plane. f Values of the dihedral angle between the mean equatorial planes of the copper atoms. g Values of the axial Cu–O–C bond angle. h Values of the axial Cu–O–C–O torsion angle. i Values of the intramolecular copper-copper distance. j Values of the magnetic coupling between the copper(II) ions across the oxalate centroligand.
Scheme 4Illustration of the relative orientation of the d(x2 − y2)-type magnetic orbitals of the copper(II) ions for oxalato-centered dicopper(II) entities with a mutually perpendicular orientation of the metal equatorial planes. The solid and dashed lines represent short and long bonds, respectively.
Figure 7Variation of the magnetic coupling parameter (J) (○) and the long axial Cu–O distance (R’) (●) with the the Cu–O–C angle (α) for oxalato-centered inverse copper(II)-pyrazole compounds (data from Table 2). The solid lines are only eye-guides.