| Literature DB >> 34066493 |
Aru Han1,2,3, Xiaoling Lu4, Song Qing5, Yongbin Bao1, Yuhai Bao5, Qing Ma1, Xingpeng Liu1, Jiquan Zhang1,2,3.
Abstract
Proximal sensing offers a novel means for determination of the heavy metal concentration in soil, facilitating low cost and rapid analysis over large areas. In this respect, spectral data and model variables play an important role. Thus far, no attempts have been made to estimate soil heavy metal content using continuum-removal (CR), different preprocessing and statistical methods, and different modeling variables. Considering the adsorption and retention of heavy metals in spectrally active constituents in soil, this study proposes a method for determining low heavy metal concentrations in soil using spectral bands associated with soil organic matter (SOM) and visible-near-infrared (Vis-NIR). To rapidly determine the concentration of heavy metals using hyperspectral data, partial least squares regression (PLSR), principal component regression (PCR), and support vector machine regression (SVMR) statistical methods and 16 preprocessing combinations were developed and explored to determine an optimal combination. The results showed that the multiplicative scatter correction and standard normal variate preprocessing methods evaluated with the second derivative spectral transformation method could accurately determine soil Cr and Ni concentrations. The root-mean-square error (RMSE) values of Vis-NIR model combinations with PLSR, PCR, and SVMR were 0.34, 3.42, and 2.15 for Cr, and 0.07, 1.78, and 1.14 for Ni, respectively. Soil Cr and Ni showed strong spectral responses to the Vis-NIR spectral band. The R2 value of the Vis-NIR-based PLSR model was higher than 0.99, and the RMSE value was 0.07-0.34, suggesting higher stability and accuracy. The results were more accurate for Ni than Cr, and PLSR showed the best performance, followed by SVMR and PCR. This perspective has critical implications for guiding quantitative biogeochemical analysis using proximal sensing data.Entities:
Keywords: Vis–NIR; heavy metal; organic matter; soil spectral information; spectral transformation
Year: 2021 PMID: 34066493 PMCID: PMC8124297 DOI: 10.3390/s21093220
Source DB: PubMed Journal: Sensors (Basel) ISSN: 1424-8220 Impact factor: 3.576
Figure 1Study areas and sampling sites.
Combination method of spectral data preprocessing and spectral transformation.
| Preprocessing and Spectral Transformation | |||
|---|---|---|---|
| SG + R | SG + R + FD | SG + R + SD | SG + R + LOG |
| SG + NOR | SG + NOR + FD | SG + NOR + SD | SG + NOR + LOG |
| SG + MSC | SG + MSC + FD | SG + MSC + SD | SG + MSC + LOG |
| SG + SNV | SG + SNV + FD | SG + SNV + SD | SG + SNV + LOG |
SG: Savitzky–Golay, R: reflectance, NOR: normalization, MSC: multiplicative scatter correction, SNV: standard normal variate, FD: first derivative, SD: second derivative, LOG: reciprocal logarithm.
Figure 2Laboratory spectral data: (a) raw spectral; (b) continuum-removal (the colored lines represent different sampling points).
Statistical results of heavy metal elements, SOM, and water content for soil samples.
| Elements | Calibration/Validation Set | Validation Statistics | Soil Organic Matter (%) | Water Content (g) | ||
|---|---|---|---|---|---|---|
| Cr (mg/kg) | Ni (mg/kg) | Cr (mg/kg) | Ni (mg/kg) | |||
| Mean | 16.59 | 5.78 | 22.02 | 7.49 | 2.93 | 5.06 |
| Std. | 3.73 | 2.28 | 4.70 | 2.07 | 1.52 | 3.8 |
| Kurtosis | 0.11 | 0.7 | −0.58 | −0.09 | −0.18 | −0.01 |
| Skewness | −0.24 | −0.56 | −0.54 | −0.37 | 0.2 | 0.52 |
| Min. | 8.02 | 0.01 | 13.52 | 3.88 | 0.04 | 0 |
| Max. | 24.12 | 10.22 | 27.25 | 10.69 | 6.82 | 15.5 |
|
| 37 | 37 | 9 | 9 | 37 | 37 |
| CV | 0.22 | 0.39 | 0.21 | 0.28 | 0.52 | 0.75 |
| K-S test Asymp.Sig. | 0.2 | 0.2 | 0.2 | 0.2 | 0.2 | 0.2 |
| Background value | 21.15 | 10.07 | 21.15 | 10.07 | ||
| Secondary standard (pH > 7.5) | 250 | 60 | 250 | 60 | ||
n: number, CV: coefficient of variation.
Figure 3Determination effect of chromium (Cr, mg/kg) and nickel (Ni, mg/kg) elements based on the R and CR of Vis–NIR spectra.
Figure 4Determination effect of chromium (Cr, mg/kg) and nickel (Ni, mg/kg) elements based on the R and CR of spectral bands associated with SOM.
Determination accuracies of Cr concentrations based on Vis–NIR spectral bands.
| Preprocessing | PLSR | PCR | SVMR | |||
|---|---|---|---|---|---|---|
| RMSE | R2 | RMSE | R2 | RMSE | R2 | |
| SG + CR | 3.3 | 0.19 | 3.61 | 0.04 | 2.73 | 0.55 |
| SG + CR + NOR | 3.3 | 0.2 | 3.67 | 0.002 | 3 | 0.47 |
| SG + CR + MSC | 3.3 | 0.2 | 3.61 | 0.04 | 2.73 | 0.55 |
| SG + CR + SNV | 3.3 | 0.19 | 3.61 | 0.04 | 2.73 | 0.55 |
| SG + CR + FD | 1.25 | 0.88 | 3.5 | 0.09 | 2.44 | 0.71 |
| SG + CR + NOR + FD | 3.03 | 0.32 | 3.67 | 0.004 | 2.49 | 0.72 |
| SG + CR + MSC + FD | 1.17 | 0.9 | 3.68 | 0.0002 | 2.41 | 0.76 |
| SG + CR + SNV + FD | 0.25 | 0.99 | 3.68 | 0.002 | 2.28 | 0.8 |
| SG + CR + SD | 0.45 | 0.98 | 3.36 | 0.16 | 2.19 | 0.82 |
| SG + CR + NOR + SD | 1.64 | 0.8 | 3.31 | 0.19 | 2.33 | 0.77 |
| SG + CR + MSC + SD | 0.34 | 0.99 | 3.43 | 0.13 | 2.28 | 0.78 |
| SG + CR + SNV + SD | 2.76 | 0.44 | 3.42 | 0.13 | 2.15 | 0.84 |
| SG + CR + LOG | 3.3 | 0.19 | 3.52 | 0.08 | 2.73 | 0.55 |
| SG + CR + NOR + LOG | 1.09 | 0.91 | 3.67 | 0.006 | 2.9 | 0.62 |
| SG + CR + MSC + LOG | 3.3 | 0.19 | 3.59 | 0.04 | 2.72 | 0.56 |
| SG + CR + SNV + LOG | 1.43 | 0.85 | 3.67 | 0.001 | 2.22 | 0.82 |
PLSR: partial least squares regression, PCR: principal component regression, SVMR: support vector machine regression, RMSE: root-mean-square error, R2: coefficient of determination, SG: Savitzky–Golay, CR: continuum-removal, NOR: normalization, MSC: multiplicative scatter correction, SNV: standard normal variate, FD: first derivative, SD: second derivative, LOG: reciprocal logarithm.
Determination accuracies of Ni concentrations based on Vis–NIR spectral bands.
| Preprocessing | PLSR | PCR | SVMR | |||
|---|---|---|---|---|---|---|
| RMSE | R2 | RMSE | R2 | RMSE | R2 | |
| SG + CR | 1.82 | 0.34 | 1.81 | 0.35 | 1.53 | 0.61 |
| SG + CR + NOR | 1.71 | 0.42 | 1.78 | 0.37 | 1.69 | 0.49 |
| SG + CR + MSC | 1.82 | 0.34 | 2.24 | 0.008 | 1.53 | 0.61 |
| SG + CR + SNV | 1.82 | 0.34 | 2.02 | 0.2 | 1.53 | 0.61 |
| SG + CR + FD | 0.27 | 0.99 | 1.88 | 0.3 | 1.39 | 0.7 |
| SG + CR + NOR + FD | 0.21 | 0.99 | 1.89 | 0.29 | 1.46 | 0.65 |
| SG + CR + MSC + FD | 1.29 | 0.67 | 1.86 | 0.32 | 1.28 | 0.75 |
| SG + CR + SNV + FD | 0.4 | 0.97 | 1.87 | 0.31 | 2.27 | 0.8 |
| SG + CR + SD | 0.25 | 0.99 | 1.82 | 0.34 | 1.17 | 0.8 |
| SG + CR + NOR + SD | 1.59 | 0.5 | 1.82 | 0.34 | 1.31 | 0.74 |
| SG + CR + MSC + SD | 0.19 | 0.99 | 1.78 | 0.37 | 1.12 | 0.8 |
| SG + CR + SNV + SD | 0.07 | 0.99 | 1.87 | 0.31 | 1.14 | 0.83 |
| SG + CR + LOG | 1.82 | 0.34 | 1.81 | 0.35 | 1.54 | 0.61 |
| SG + CR + NOR + LOG | 1.98 | 0.22 | 2.23 | 0.01 | 1.64 | 0.56 |
| SG + CR + MSC + LOG | 1.82 | 0.34 | 2 | 0.2 | 1.53 | 0.61 |
| SG + CR + SNV + LOG | 1.48 | 0.57 | 2.24 | 0.006 | 1.47 | 0.76 |
Determination accuracies of Cr concentrations based on spectral bands associated with SOM.
| Preprocessing | PLSR | PCR | SVMR | |||
|---|---|---|---|---|---|---|
| RMSE | R2 | RMSE | R2 | RMSE | R2 | |
| SG + CR | 3.61 | 0.04 | 3.67 | 0.004 | 3.28 | 0.2 |
| SG + CR + NOR | 3.48 | 0.11 | 3.5 | 0.09 | 3.33 | 0.18 |
| SG + CR + MSC | 3.61 | 0.04 | 3.65 | 0.004 | 3.32 | 0.12 |
| SG + CR + SNV | 3.61 | 0.04 | 3.67 | 0.004 | 3.27 | 0.2 |
| SG + CR + FD | 0.65 | 0.97 | 2.98 | 0.34 | 2.98 | 0.42 |
| SG + CR + NOR + FD | 3.21 | 0.24 | 3.66 | 0.008 | 3.09 | 0.31 |
| SG + CR + MSC + FD | 0.5 | 0.98 | 3.48 | 0.11 | 2.72 | 0.51 |
| SG + CR + SNV + FD | 0.53 | 0.98 | 3.02 | 0.32 | 2.65 | 0.54 |
| SG + CR + SD | 0.21 | 0.99 | 3.33 | 0.18 | 2.19 | 0.77 |
| SG + CR + NOR + SD | 3.04 | 0.32 | 3.19 | 0.25 | 3.05 | 0.35 |
| SG + CR + MSC + SD | 2.95 | 0.36 | 3.31 | 0.19 | 2.23 | 0.75 |
| SG + CR + SNV + SD | 0.51 | 0.98 | 3.32 | 0.19 | 2.2 | 0.77 |
| SG + CR + LOG | 3.61 | 0.04 | 3.67 | 0.004 | 3.32 | 0.21 |
| SG + CR + NOR + LOG | 3.39 | 0.15 | 3.5 | 0.1 | 3.13 | 0.34 |
| SG + CR + MSC + LOG | 3.61 | 0.04 | 3.67 | 0.004 | 3.33 | 0.2 |
| SG + CR + SNV + LOG | 3.62 | 0.03 | 3.66 | 0.007 | 3.47 | 0.12 |
Determination accuracies of Ni concentrations based on spectral bands associated with SOM.
| Preprocessing | PLSR | PCR | SVMR | |||
|---|---|---|---|---|---|---|
| RMSE | R2 | RMSE | R2 | RMSE | R2 | |
| SG + CR | 1.41 | 0.61 | 1.56 | 0.52 | 2.09 | 0.14 |
| SG + CR + NOR | 2.19 | 0.05 | 2.2 | 0.04 | 2.11 | 0.13 |
| SG + CR + MSC | 1.41 | 0.61 | 2.51 | 0.12 | 2.09 | 0.14 |
| SG + CR + SNV | 1.41 | 0.61 | 2.05 | 0.17 | 2.09 | 0.14 |
| SG + CR + FD | 0.36 | 0.98 | 1.74 | 0.4 | 1.78 | 0.43 |
| SG + CR + NOR + FD | 2.12 | 0.11 | 1.98 | 0.22 | 2.04 | 0.02 |
| SG + CR + MSC + FD | 0.3 | 0.98 | 1.59 | 0.5 | 1.57 | 0.53 |
| SG + CR + SNV + FD | 1.87 | 0.31 | 1.62 | 0.48 | 1.53 | 0.57 |
| SG + CR + SD | 1.7 | 0.43 | 1.88 | 0.3 | 1.23 | 0.78 |
| SG + CR + NOR + SD | 2.04 | 0.18 | 2.11 | 0.12 | 2 | 0.25 |
| SG + CR + MSC + SD | 1.63 | 0.48 | 1.79 | 0.37 | 1.13 | 0.82 |
| SG + CR + SNV + SD | 1.68 | 0.44 | 1.7 | 0.43 | 1.22 | 0.78 |
| SG + CR + LOG | 1.28 | 0.68 | 1.57 | 0.51 | 2.08 | 0.14 |
| SG + CR + NOR + LOG | 3.39 | 0.15 | 2.2 | 0.04 | 3.13 | 0.35 |
| SG + CR + MSC + LOG | 1.4 | 0.61 | 2.05 | 0.17 | 2.08 | 0.15 |
| SG + CR + SNV + LOG | 2.21 | 0.03 | 2.23 | 0.01 | 2.11 | 0.12 |
Determination accuracies of Cr, and Ni concentrations based on spectral bands associated with SOM and Vis–NIR.
| Dataset | Statistical Method | Elements | Calibration ( | Validation ( | ||
|---|---|---|---|---|---|---|
| RMSEC | RC2 | RMSEV | RV2 | |||
| Vis–NIR | PLSR | Cr | 0.46 | 0.99 | 1.56 | 0.66 |
| Ni | 0.38 | 0.97 | 1.28 | 0.55 | ||
| PCR | Cr | 3.75 | 0.12 | 2.06 | 0.42 | |
| Ni | 1.76 | 0.35 | 1.99 | 0.33 | ||
| SVMR | Cr | 3.81 | 0.68 | 4.27 | 0.38 | |
| Ni | 2.27 | 0.61 | 2.52 | 0.17 | ||
| SOM | PLSR | Cr | 0.67 | 0.97 | 1.69 | 0.61 |
| Ni | 0.33 | 0.98 | 1.44 | 0.43 | ||
| PCR | Cr | 3.88 | 0.06 | 2.57 | 0.09 | |
| Ni | 2.34 | 0.05 | 1.42 | 0.45 | ||
| SVMR | Cr | 3.85 | 0.53 | 4.22 | 0.36 | |
| Ni | 2.31 | 0.59 | 2.52 | 0.25 | ||
Validation of the models for prediction of soil Cr, and Ni concentrations based on Vis–NIR.
| Statistical Method | Elements | Validation ( | |
|---|---|---|---|
| RMSEP | RP2 | ||
| PLSR | Cr | 2.02 | 0.54 |
| Ni | 0.02 | 0.57 | |
RMSEP: root-mean-square error of prediction.