| Literature DB >> 34063302 |
Md Mohaimenul Islam1,2,3, Tahmina Nasrin Poly1,2,3, Belal Alsinglawi4, Ming Chin Lin1,5,6, Min-Huei Hsu7, Yu-Chuan Jack Li1,2,3,8,9.
Abstract
Artificial intelligence (AI) has shown immense potential to fight COVID-19 in many ways. This paper focuses primarily on AI's role in managing COVID-19 using digital images, clinical and laboratory data analysis, and a summary of the most recent articles published last year. We surveyed the use of AI for COVID-19 detection, screening, diagnosis, the progression of severity, mortality, drug repurposing, and other tasks. We started with the technical overview of all models used to fight the COVID-19 pandemic and ended with a brief statement of the current state-of-the-art, limitations, and challenges.Entities:
Keywords: COVID-19; artificial intelligence; coronavirus; deep learning; machine learning
Year: 2021 PMID: 34063302 PMCID: PMC8124542 DOI: 10.3390/jcm10091961
Source DB: PubMed Journal: J Clin Med ISSN: 2077-0383 Impact factor: 4.241
Figure 1Application of AI to fight COVID-19.
Figure 2The basic structure of ANN.
Figure 3A schematic view of the CNN model.
Figure 4Max pooling in CNN.
Figure 5Fully connected layer in CNN.
Figure 6The architecture of RNN.
Figure 7A basic structure of LSTM.
The performance of AI model for COVID-19 detection.
| Author | Model | Algorithms | Applications | Modality | F-1 Score | AUROC/Accuracy |
|---|---|---|---|---|---|---|
| Hemdan [ | CNN | DenseNet | Classification of COVID-19 and normal | X-ray | 0.91 | - |
| Civit-Masot [ | CNN | VGG16 | Classification of COVID-19, Pneumonia, and healthy | X-ray | 0.91 | >90 |
| Elaziz [ | CNN | FrMEMs | Classification of COVID-19 and healthy | X-ray | - | --/96 and 98 |
| Wang [ | CNN | Xception + SVM | Classification of COVID-19 and normal | X-ray | - | 99.33/99.32 |
| Das [ | CNN | VGG-16 | Classification of COVID-19, Pneumonia and normal | X-ray | 0.96 | --/97.67 |
| Kassani [ | CNN | DesnseNet121+Bagging | Classification of COVID-19 and normal | X-ray and CT scan | 0.96 | --/99 |
| Ardakani [ | CNN | ResNet-101 | Classification of COVID-19 and normal | CT scan | 1.0 | 99.4/99.5 |
| Jain [ | CNN | ResNet101 | Classification of COVID-19 and viral pneumonia | X-ray | 0.98 | --/98.15 |
| Singh [ | CNN | MODE-based CNN | Classification of COVID-19 and normal | CT scan | -- | --/93.3 |
| Ahuja [ | CNN | ResNet 18 | Classification of COVID-19 and normal | CT scan | 0.99 | 99.65/99.4 |
Note: CNN: Convolutional Neural Network.
The performance of AI model to predict disease severity of patients with COVID-19.
| Author | Methods | Application | Variable Types | Precision/Recall | AUROC/Accuracy |
|---|---|---|---|---|---|
| Akbar [ | GBM | Severity of COVID-19 | Blood | 0.91/0.88 | 89/89 |
| Feng [ | RNN | Severity | CT scan | --/0.81 | 90/94 |
| Xiao [ | CNN | Severity | CT scan | --/-- | 89/81.9 |
| Wu [ | LR | Severity | CT and laboratory | 0.66~0.95/ | 84~93/ |
| Li [ | CNN | Severity | CT and laboratory | 0.82/0.79 | 93/88 |
| Kang [ | ANN | Severity | CT, clinical and laboratory | --/-- | 95/-- |
| Ho [ | CNN | Severity | CT | 0.78/0.80 | 91/93 |
Note: CNN: Convolutional Neural Network; RNN: Recurrent Neural Network; ANN: Artificial Neural Network; GBM: Gradient Boosting Method; CT: Computed Tomography.
The performance of AI model to predict mortality of COVID-19.
| Author | Methods | Application | Variable | Sensitivity/Specificity | AUROC/Accuracy |
|---|---|---|---|---|---|
| Abdulaal [ | ANN | Mortality risk | Demographic, comorbidities, smoking history, and symptom | 0.87/0.85 | -/86.25 |
| An [ | SVM | Mortality risk | Demographics, symptom, comorbidities, and medications | 0.92/0.91 | 96.3/- |
| Gao [ | Ensemble model | Mortality risk | Demographics, comorbidity and vital sign | 0.32~0.45/ | 92~97/ |
| Hu [ | LR | Mortality risk | Demographic and laboratory | 0.83/0.79 | 88/- |
| Li [ | ANN | Mortality risk | Demographics, symptoms and laboratory | 0.75/0.87 | 84/85 |
| Yan [ | XGBoost | Mortality risk | Demographic, symptom, and laboratory | 1/- | 92.2~95.05/ |
| Rechtman [ | XGBoost | Mortality risk | Demographics, symptoms, comorbidities | - | 86/- |
| Ryan [ | XGBoost | Mortality risk | Demographic, comorbidity, vital sign, and laboratory | 0.82/0.84 | 91.0/80 |
| Vaid [ | XGBoost | Mortality risk | Demographic, comorbidity, vital sign, and laboratory | - | 68~98/ |
| Yadaw [ | XGBoost | Mortality risk | Demographics, comorbidity, smoking | - | -/91 |
Note: LR: Logistic Regression; SVM: Support Vector Machine; ANN: Artificial Neural Network.
Application of AI for COVID-19 drug repurposing.
| Author | Application | Model | Data | Results |
|---|---|---|---|---|
| Beck-2020 [ | Identifying available drugs that could act on viral proteins of SARS-CoV-2 using Molecule Transformer-Drug Target Interaction (MT-DTI) | Transfer learning and molecular docking | Drug Target Common (DTC) database and BindingDB | antiviral drugs such as lopinavir/ritonavir had been identified by the MT-DTI model should be considered |
| Choi-2020 [ | Finding approved drugs that can inhibit COVID-19 by using g a deep learning-based drug-target interaction model called Molecule Transformer-Drug Target Interaction (MT-DTI) | Transfer learning and molecular docking | DrugBank and ZINC | Identified 30 drugs that have strong inhibitory potencies to the angiotensin converting Enzyme 2 (ACE2) receptor and the transmembrane protease serine 2 (TMPRSS2). |
| Esmail-2020 [ | Identifying antiviral therapeutic targets for drug repurposing by using the DeepNEU stem cell-based platform and validated computer simulations of artificial lung cells. | Hybrid deep-machine | DeepNEU database plus important information upgrades in the form of a new gene, protein, and phenotypic relationship data. | To improve preparedness for and response to future viral outbreaks. |
| Gusarov-2020 [ | Identifying potential drugs for SARS-CoV-2 using machine learning algorithms | Machine learning algorithms | N/A | Short for conductor-like screening model for real solvents might assist to accelerate drug discovery for the treatment of COVID-19 |
| Hooshmand-2020 [ | Finding potential drugs that can inhibit COVID-19 using the Multimodal Restricted Boltzmann Machine approach (MM-RBM) | Multimodal Restricted Boltzmann Machine approach (MM-RBM) | Harmonizome and Literacy Information and Communication System (LINCS) | MM-RBM has immense potential to identify the highly promising medications for COVID-19 with minimum side effects. |
| N. Ioannidis-2020 [ | Identifying COVID-19 drugs for repurposing using deep graph learning | RGCN and state-of-the-art KGE | IMDB, DBLP and drug-repurposing knowledge-graph (DRKG) | Their model showed promise to identify possible drug candidates. |
| Ke-2020 [ | Identifying the marketed drugs with potential for treating COVID-19 using artificial intelligence method | Deep Neural Network (DNN) | DrugBank, | Identified 80 potential drugs that have the ability to fight coronavirus. |
| Kowalewski-2020 [ | Searching several drug candidates for COVID-19 using machine learning algorithms. | Support vector machine | ZINC, ChEMBL 25, DrugBank, EPI Suite, Therapeutic targets databases, Hazardous substances data Bank | Suggested several drugs for repurposed that suited for short-term approval, and long-term approval need follow-up |
| Loucera-2020 [ | Aimed at using machine learning models to identify appropriate drugs fight against SARS-CoV-2 infection | Machine learning | DrugBank | It shows promising results and found several drugs that can be considered only a subset of the potential drug candidates for repurposing. |
| Mohapatra-2020 [ | Developed a machine-learning model to find drugs already available in the market; can be used for inhibiting SARS-CoV-2 infection. | Classification models such as Naïve Bayes, molecular docking | PubChem Bioassay, DrugBank | The findings suggested that machine-learning algorithms can be identified and tested the therapeutic agents for COVID-19 treatment. |
| Pham-2020 [ | Identifying strong associations among biological features, and outputs to predict gene expression profiles given a new chemical compound. | DeepCE based on linear models, vanilla neural network, k-nearest neighbor, and tensor-train weight optimization models. | L1000 gene expression gene, STRING, DrugBank, Gene Expression Omnibus | DeepCE helps to accelerate |
| Verma-2020 [ | To evaluate potential response of existing antiviral drug candidates against SARS-CoV-2 target proteins that help viral entry and replication into the host body. | Bayesian machine learning | PubChem, ZINC, DrugBank, | Their model identified 45 drugs that can inhibit SARS-CoV-2. Those drugs work on the major target proteins such as spike protein (S) and main proteases. |
| Zeng-2020 [ | To develop a network-based deep-learning method of identifying drugs to work as repurpose drugs for COVID-19 | DGL-KE developed by AWS AI | PubMed, DrugBank | Their model identified 41 repurpose drugs that may accelerate therapeutic response against COVID-19 |