| Literature DB >> 34062933 |
Yong-Woo Kim1, Eunoo Bak1, Seoyoung Wy1, Seung-Chan Lee1, Yu-Jeong Kim1, Young-Kook Kim1, Ki-Ho Park1, Jin-Wook Jeoung1.
Abstract
Rho-associated coiled-coil kinase (ROCK) signaling can affect glaucoma risk by regulating trabecular meshwork outflow. We investigated the effect of ROCK gene polymorphism on the risks of primary open-angle glaucoma (POAG) and POAG-related phenotypes including intraocular pressure (IOP) in a Korean population. A total of 24 single-nucleotide polymorphisms (SNPs) from ROCK1 and ROCK2 were selected and genotyped for 363 POAG patients and 213 healthy controls. Among the 363 POAG patients, 282 were normal-tension glaucoma (NTG, baseline IOP ≤ 21 mmHg) and 81 were high-tension glaucoma (HTG, baseline IOP > 21 mmHg). The SNPs rs288979, rs1006881, rs35996865, rs10083915, and rs11873284 in ROCK1 (tagged to each other, r2 = 1) were nominally associated with risk of HTG (OR = 0.52, p = 0.045). However, there were no SNPs that were significantly associated with the risk of NTG. In the genotype-phenotype correlation analysis, the SNPs rs2230773 and rs3771106 in ROCK2 were significantly correlated with central corneal thickness (CCT)-adjusted IOP (p = 0.024) and axial length (AXL; p = 0.024), respectively. The present data implicated the role of ROCK in POAG development, and as such, can serve as a good reference for upcoming Rho/ROCK-pathway-related studies on POAG.Entities:
Keywords: primary open-angle glaucoma; rho-associated coiled-coil kinase (ROCK); single nucleotide polymorphism
Year: 2021 PMID: 34062933 PMCID: PMC8124732 DOI: 10.3390/jcm10091953
Source DB: PubMed Journal: J Clin Med ISSN: 2077-0383 Impact factor: 4.241
Target SNPs for ROCK polymorphism analysis
| N | ID | Tagging SNP | Gene | Chr | Position | Location | AA Change |
|---|---|---|---|---|---|---|---|
| 1 | rs2271621 | rs2290156 |
| 2 | 11193868 | intron | |
| 2 | rs34945852 |
| 2 | 11197557 | missense | K997M | |
| 3 | rs202027620 |
| 2 | 11200967 | missense | T881I | |
| 4 | rs35768389 |
| 2 | 11214974 | missense | D515V | |
| 5 | rs190769228 |
| 2 | 11215516 | missense | N445H | |
| 6 | rs2230773 |
| 2 | 11249688 | synonymous | ||
| 7 | rs3771106 | rs2230774, rs1515219, rs726843, rs978906 |
| 2 | 11249986 | intron | |
| 8 | rs965665 |
| 2 | 11258749 | intron | ||
| 9 | rs10178332 |
| 2 | 11268891 | intron | ||
| 10 | rs1130157 |
| 2 | 11286615 | 5’UTR | ||
| 11 | rs6755196 |
| 2 | 11320199 | intron | ||
| 12 | rs10929732 |
| 2 | 11343366 | intron | ||
| 13 | rs75122528 |
| 18 | 20947821 | 3’UTR | ||
| 14 | rs2847081 |
| 18 | 20948500 | 3’UTR | ||
| 15 | rs8089184 |
| 18 | 20970650 | intron | ||
| 16 | rs288980 |
| 18 | 21029619 | intron | ||
| 17 | rs288979 | rs7239317 |
| 18 | 21031282 | intron | |
| 18 | rs2127958 |
| 18 | 21073649 | intron | ||
| 19 | rs1481280 |
| 18 | 21075490 | intron | ||
| 20 | rs1006881 | rs11874761 |
| 18 | 21101332 | intron | |
| 21 | rs35996865 |
| 18 | 21112383 | 5’near | ||
| 22 | rs10083915 |
| 18 | 21120994 | 5’near | ||
| 23 | rs11873284 |
| 18 | 21135030 | 5’near | ||
| 24 | rs1515210 |
| 18 | 29283684 | 5’ |
SNP: single nucleotide polymorphism, ROCK: rho-kinase, Chr: chromosome, AA: amino acid, UTR: untranslated region.
Subject demographics
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| Age, year | 54.0 ± 13.7 | 54.6 ± 9.7 | 0.55 * | |
| NTG | 54.3 ± 13.3 | 54.6 ± 9.7 | 0.76 * | |
| HTG | 53.1 ± 15.3 | 54.6 ± 9.7 | 0.40 * | |
| Sex (Female), | 180 (49.6%) | 93 (43.7%) | 0.17 † | |
| NTG | 155 (55.0%) |
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| HTG | 25 (30.9%) | 93 (43.7%) | 0.06 † | |
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| Baseline IOP, mm Hg |
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| CCT, µm |
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| AXL, mm | 24.7 ± 1.6 | 24.7 ± 1.8 | 0.96 * | |
| DH history |
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| Rim area, mm2 |
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| Disc area, mm2 | 1.95 ± 0.50 | 1.93 ± 0.40 | 0.80 * | |
| Vertical C/D |
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| Average RNFL thickness, μM |
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| Average GCIPL thickness, μM |
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| MD of VF, dB | − | − | ||
Data are presented as mean ± standard deviation values. Statistically significant values are shown in bold. * Comparison performed using Student’s t-test, † Comparison performed using chi-square test. POAG: primary open-angle glaucoma, NTG: normal-tension glaucoma, HTG: high-tension glaucoma. IOP: intraocular pressure, CCT: central corneal thickness, AXL: axial length, DH: disc hemorrhage, C/D: cup-to-disc ratio, RNFL: retinal nerve fiber layer, GCIPL: ganglion cell-inner plexiform layer, MD: mean deviation, VF: visual field.
Genetic association of ROCK polymorphism with POAG
| Gene | ID | Alleles | POAG | |||
|---|---|---|---|---|---|---|
| Case MAF | Control MAF | OR (95%CI) | ||||
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| rs2271621 | G > T | 0.486 | 0.479 | 1.03 (0.81, 1.32) | 0.80 |
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| rs202027620 | G > A | 0.000 | 0.005 | ||
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| rs2230773 | C > T | 0.024 | 0.024 | 1.04 (0.47, 2.33) | 0.92 |
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| rs3771106 | G > A | 0.448 | 0.433 | 1.06 (0.83, 1.36) | 0.63 |
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| rs965665 | G > C | 0.008 | 0.002 | 3.69 (0.44, 31.01) | 0.17 |
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| rs10178332 | A > C | 0.008 | 0.002 | 3.69 (0.44, 31.01) | 0.17 |
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| rs6755196 | G > A | 0.008 | 0.002 | 3.68 (0.44, 30.94) | 0.17 |
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| rs10929732 | G > A | 0.036 | 0.045 | 0.80 (0.44, 1.47) | 0.48 |
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| rs75122528 | A > T | 0.300 | 0.319 | 0.92 (0.71, 1.19) | 0.54 |
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| rs2847081 | T > C | 0.138 | 0.127 | 1.09 (0.76, 1.56) | 0.65 |
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| rs8089184 | T > C | 0.145 | 0.131 | 1.11 (0.78, 1.58) | 0.56 |
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| rs288980 | T > C | 0.475 | 0.474 | 1.00 (0.79, 1.27) | 0.99 |
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| rs288979 | A > G | 0.138 | 0.129 | 1.08 (0.76, 1.54) | 0.67 |
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| rs2127958 | T > C | 0.441 | 0.445 | 0.99 (0.78, 1.25) | 0.90 |
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| rs1481280 | C > A | 0.300 | 0.312 | 0.95 (0.74, 1.23) | 0.72 |
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| rs1006881 | G > A | 0.140 | 0.129 | 1.10 (0.77, 1.56) | 0.61 |
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| rs35996865 | T > G | 0.138 | 0.129 | 1.08 (0.76, 1.54) | 0.68 |
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| rs10083915 | A > G | 0.141 | 0.129 | 1.10 (0.77, 1.56) | 0.60 |
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| rs11873284 | A > G | 0.141 | 0.129 | 1.10 (0.77, 1.57) | 0.60 |
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| rs1515210 | C > G | 0.183 | 0.181 | 1.03 (0.75, 1.41) | 0.86 |
POAG: primary open-angle glaucoma, ROCK: rho-kinase, MAF: minor allele frequency, OR: odds ratio, CI: confidence interval. SNPs rs34945852, rs35768389, rs190769228, and rs1130157 in ROCK2 were monomorphic in cases and controls and were removed from the table.
Genetic association of ROCK polymorphism with NTG and HTG
| Gene | ID | Alleles | Control MAF | NTG | HTG | ||||
|---|---|---|---|---|---|---|---|---|---|
| Case MAF | OR (95%CI) | Case MAF | OR (95%CI) | ||||||
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| rs2271621 | G > T | 0.479 | 0.491 | 1.05 (0.81, 1.36) | 0.71 | 0.468 | 0.96 (0.66, 1.42) | 0.85 |
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| rs202027620 | G > A | 0.005 | 0.000 | 0.000 | ||||
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| rs2230773 | C > T | 0.024 | 0.020 | 0.83 (0.34, 2.00) | 0.67 | 0.039 | 1.59 (0.55, 4.56) | 0.40 |
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| rs3771106 | G > A | 0.433 | 0.453 | 1.09 (0.84, 1.41) | 0.54 | 0.429 | 1.00 (0.67, 1.47) | 0.99 |
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| rs965665 | G > C | 0.002 | 0.011 | 4.94 (0.58, 41.83) | 0.09 | 0.000 | ||
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| rs10178332 | A > C | 0.002 | 0.011 | 4.94 (0.58, 41.83) | 0.09 | 0.000 | ||
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| rs6755196 | G > A | 0.002 | 0.011 | 4.92 (0.58, 41.72) | 0.09 | 0.000 | ||
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| rs10929732 | G > A | 0.045 | 0.036 | 0.78 (0.41, 1.49) | 0.45 | 0.039 | 0.83 (0.33, 2.09) | 0.69 |
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| rs75122528 | A > T | 0.319 | 0.282 | 0.86 (0.65, 1.13) | 0.27 | 0.364 | 1.19 (0.82, 1.74) | 0.36 |
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| rs2847081 | T > C | 0.127 | 0.153 | 1.22 (0.84, 1.77) | 0.28 | 0.076 | 0.56 (0.28, 1.14) | 0.09 |
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| rs8089184 | T > C | 0.131 | 0.164 | 1.28 (0.89, 1.84) | 0.18 | 0.078 | 0.56 (0.29, 1.08) | 0.07 |
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| rs288980 | T > C | 0.474 | 0.475 | 1.00 (0.78, 1.29) | 1.00 | 0.474 | 0.99 (0.69, 1.42) | 0.97 |
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| rs288979 | A > G | 0.129 | 0.157 | 1.26 (0.87, 1.82) | 0.22 |
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| rs2127958 | T > C | 0.445 | 0.441 | 0.99 (0.77, 1.28) | 0.95 | 0.442 | 0.98 (0.68, 1.40) | 0.90 |
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| rs1481280 | C > A | 0.312 | 0.280 | 0.88 (0.67, 1.15) | 0.34 | 0.370 | 1.25 (0.87, 1.82) | 0.23 |
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| 0.129 | 0.159 | 1.28 (0.89, 1.84) | 0.19 |
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| 0.129 | 0.156 | 1.26 (0.87, 1.82) | 0.22 |
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| 0.129 | 0.161 | 1.28 (0.89, 1.83) | 0.19 |
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| 0.129 | 0.160 | 1.28 (0.89, 1.85) | 0.18 |
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| rs1515210 | C > G | 0.181 | 0.185 | 1.05 (0.75, 1.46) | 0.78 | 0.175 | 0.94 (0.58, 1.52) | 0.80 |
Statistically significant values are shown in bold. NTG: normal-tension glaucoma, HTG: high-tension glaucoma, ROCK: rho-kinase, MAF: minor allele frequency, OR: odds ratio, CI: confidence interval. SNPs rs34945852, rs35768389, rs190769228, and rs1130157 in ROCK2 were monomorphic in cases and controls and were removed from the table.
Figure 1Genotype-phenotype correlations of ROCK-related variants in the entire POAG population. IOP: intraocular pressure, AXL: axial length, ROCK: Rho-associated coiled-coil kinase