Literature DB >> 34061750

An Ensemble of U-Net Models for Kidney Tumor Segmentation With CT Images.

Jason Causey, Jonathan Stubblefield, Jake Qualls, Jennifer Fowler, Lingrui Cai, Karl Walker, Yuanfang Guan, Xiuzhen Huang.   

Abstract

We present here the Arkansas AI-Campus solution method for the 2019 Kidney Tumor Segmentation Challenge (KiTS19). Our Arkansas AI-Campus team participated the KiTS19 Challenge for four months, from March to July of 2019. This paper provides a summary of our methods, training, testing and validation results for this grand challenge in biomedical imaging analysis. Our deep learning model is an ensemble of U-Net models developed after testing many model variations. Our model has consistent performance on the local test dataset and the final competition independent test dataset. The model achieved local test Dice scores of 0.949 for kidney and tumor segmentation, and 0.601 for tumor segmentation, and the final competition test earned Dice scores 0.9470 and 0.6099 respectively. The Arkansas AI-Campus team solution with a composite DICE score of 0.7784 has achieved a final ranking of top fifty worldwide, and top five among the United States teams in the KiTS19 Competition.

Entities:  

Mesh:

Year:  2022        PMID: 34061750      PMCID: PMC9210325          DOI: 10.1109/TCBB.2021.3085608

Source DB:  PubMed          Journal:  IEEE/ACM Trans Comput Biol Bioinform        ISSN: 1545-5963            Impact factor:   3.702


  6 in total

Review 1.  Renal-cell carcinoma.

Authors:  Herbert T Cohen; Francis J McGovern
Journal:  N Engl J Med       Date:  2005-12-08       Impact factor: 91.245

2.  Positive surgical margins in renal cell carcinoma: translating tumor biology into clinical outcomes.

Authors:  Maria M Picken; Lu Wang; Gopal N Gupta
Journal:  Am J Clin Pathol       Date:  2015-05       Impact factor: 2.493

3.  Automatic multiorgan segmentation in thorax CT images using U-net-GAN.

Authors:  Xue Dong; Yang Lei; Tonghe Wang; Matthew Thomas; Leonardo Tang; Walter J Curran; Tian Liu; Xiaofeng Yang
Journal:  Med Phys       Date:  2019-03-22       Impact factor: 4.071

4.  Preoperative aspects and dimensions used for an anatomical (PADUA) classification of renal tumours in patients who are candidates for nephron-sparing surgery.

Authors:  Vincenzo Ficarra; Giacomo Novara; Silvia Secco; Veronica Macchi; Andrea Porzionato; Raffaele De Caro; Walter Artibani
Journal:  Eur Urol       Date:  2009-08-04       Impact factor: 20.096

5.  Mask R-CNN.

Authors:  Kaiming He; Georgia Gkioxari; Piotr Dollar; Ross Girshick
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2018-06-05       Impact factor: 6.226

6.  Evaluating White Matter Lesion Segmentations with Refined Sørensen-Dice Analysis.

Authors:  Aaron Carass; Snehashis Roy; Adrian Gherman; Jacob C Reinhold; Andrew Jesson; Tal Arbel; Oskar Maier; Heinz Handels; Mohsen Ghafoorian; Bram Platel; Ariel Birenbaum; Hayit Greenspan; Dzung L Pham; Ciprian M Crainiceanu; Peter A Calabresi; Jerry L Prince; William R Gray Roncal; Russell T Shinohara; Ipek Oguz
Journal:  Sci Rep       Date:  2020-05-19       Impact factor: 4.379

  6 in total
  1 in total

1.  Kidney Tumor Semantic Segmentation Using Deep Learning: A Survey of State-of-the-Art.

Authors:  Abubaker Abdelrahman; Serestina Viriri
Journal:  J Imaging       Date:  2022-02-25
  1 in total

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