Mitochondrial aldehyde dehydrogenase 2 (ALDH2) is predominantly linked with acetaldehyde detoxification in the second stage of alcohol metabolism. To intensively study ALDH2 function, a higher purity and uniform composition of the protein is required. An efficient Escherichia coli system for ALDH2 expression was developed by using His and a small ubiquitin-related modifier fusion tag. Most of the recombinant ALDH2s were expressed in the form of inclusion bodies. The ALDH2-enriched inclusion bodies were denatured with 6 M guanidine hydrochloride, and then ALDH2 was ultrafitrated. Finally, ALDH2 was successfully purified through affinity and gel filtration chromatography. The purified ALDH2 was finally preserved by the vacuum freeze-drying method, and its purity was determined to be higher than 95%, with a final media yield of 33.89 mg/L. The specific activity of ALDH2 was 6.1 × 104 U/mg. This work was the first to report pET-SUMO-ALDH2 recombinant plasmid expression in Escherichia coli, and the inclusion bodies were isolated and refolded. Finally, the purified ALDH2 had relatively higher purity, yield, and biological activity.
Mitochondrial aldehyde dehydrogenase 2 (ALDH2) is predominantly linked with acetaldehyde detoxification in the second stage of alcohol metabolism. To intensively study ALDH2 function, a higher purity and uniform composition of the protein is required. An efficient Escherichia coli system for ALDH2 expression was developed by using His and a small ubiquitin-related modifier fusion tag. Most of the recombinant ALDH2s were expressed in the form of inclusion bodies. The ALDH2-enriched inclusion bodies were denatured with 6 M guanidine hydrochloride, and then ALDH2 was ultrafitrated. Finally, ALDH2 was successfully purified through affinity and gel filtration chromatography. The purified ALDH2 was finally preserved by the vacuum freeze-drying method, and its purity was determined to be higher than 95%, with a final media yield of 33.89 mg/L. The specific activity of ALDH2 was 6.1 × 104 U/mg. This work was the first to report pET-SUMO-ALDH2 recombinant plasmid expression in Escherichia coli, and the inclusion bodies were isolated and refolded. Finally, the purified ALDH2 had relatively higher purity, yield, and biological activity.
The aldehyde dehydrogenase
(ALDH) superfamily, which has an ancient
origin, can be found in all living organisms. It is expressed in Eukaryotic taxa, Eubacteria, and Archaea.[1] ALDH plays a critical
role in detoxification of organisms and exogenous aldehydes. Aldehydes
are a kind of highly active compounds that can form adducts with proteins,
lipids, and deoxyribonucleic acid (DNA), affecting the function of
biomolecules and inducing cytotoxicity.[2] Among 19 kinds of human genome ALDH genes, ALDH2 has gained increased
attention as a metabolite of aldehyde compounds in different directives,
such as propionaldehyde, butyraldehyde, and 4-hydroxy-2-nonenal (4-HNE).[3,4] The humanALDH2 gene is located at chromosome 12q24. Its protein
ALDH2 is a 517-amino acid polypeptide. ALDH2 is transported to the
mitochondrial matrix process that is dependent on its NH2 terminus 17-amino acid mitochondrial targeting sequence. The 17-amino
acids are cleaved after the protein complete folding inside the mitochondria.[5] ALDH2 is a kind of tetrameric enzyme consisting
of 56 kDa equivalent submits.[6] ALDH2 has
three kinds of enzymatic activities. First, dehydrogenase activity
converts aldehydes to carboxylic acids. Second, esterase activity
converts carboxylic acid ester into free carboxylic acid and alcohol.
Third, nitroglycerin reductase activity, which is a bioactivation
enzyme for organic nitrates.[7]Based
on the important role studies of ALDH2 enzymatic activities
in cell protection as well as how aldehydes participate in the pathology
of human diseases, ALDH2 is a critical protein involved in a variety
of disease phenotypes. ALDH2 has a critical function in cardiovascular
diseases, including heart failure, myocardial infarct, and stroke.[8−10] ALDH2 is also associated with diabetes, cancer, neurodegenerative
diseases, and osteoporosis.[11−13] Therefore, potential functional
studies of ALDH2 and pharmaceutical development will impact the lifespan
or quality of human life.[14]Cellular
protein functions usually involve coordinating interactions
with one or more regulatory partners. Therefore, it is necessary to
characterize proteins both in the separation process and in the context
of complex chaperone interaction.[15] Therefore,
research on ALDH2 function requires high purity and high concentration
of homogeneous protein specimen. These requirements are usually the
main obstacles to further protein research. Recently, commercial ALDH2
is mainly extracted from animal liver and pancreas, with limited resources
and high price, making large-scale production difficult. Genetic engineering
technology can produce ALDH2 on a large scale, but there is little
research on ALDH2 in this area. The cost of genetic engineering technology
is relatively high, and there is no significant result and optimal
protein purification scheme to extract ALDH2. However, ALDH2 has been
reported in the literature in almost all animals and yeast, and there
is little research in prokaryotes. The prokaryotic system is the main
host for heterologous expression. Bacteria are easily operated, durable,
and grow rapidly and powerfully with high density and low cost.[16] Once 70% of the recombinant proteins are present
in inclusion bodies (IBs), it will be difficult to study the heterologous
expression necessary for the characterization of structural and functional
proteins.[17] Heterologous expression of
the humanALDH2 gene in Escherichia coli (E. coli), encoding the protein that exhibit complex
structures, often induces accumulation of most of the expressed proteins
in inactive and insoluble form. Therefore, exploring of optimal refolding
conditions and biological activity maintenance of ALDH2 expressed
in the form of IBs are the difficulties of purifying ALDH2.The advantage of the His tag is that it can increase protein stability
and solubility, prevent proteolysis, and still function under denaturing
conditions.[18] A small ubiquitin-related
modifier (SUMO) is a chaperone protein with about 100 amino acids.
SUMO has functions that can form covalent attachments to target proteins.[19] SUMO can fuse into the N-terminus of the target
protein and enhance protein folding via its molecular chaperone properties.
Thus, SUMO can be an effective carrier in the expression of recombinant
proteins. SUMO can improve target protein expression, folding, and
solubility, reduce protein hydrolysis and degradation, facilitate
protein purification, and detect target proteins.[20] SUMO protease 1 is also called Ubiquitin-like specific
protease 1 (Ulp1), and it conveniently cuts the SUMO tag to obtain
natural ALDH2 and can be implemented in difficult-to-express ALDH2
functional analysis. In this article, we also put forward a novel
and effective solubilization and purification protocol for ALDH2 protein.
Purified ALDH2 demonstrated higher biological activity, which will
provide a basis for subsequent protein function research.
Results and Discussion
Identification of the Recombinant
ALDH2 Plasmids
We successfully constructed pET-28a(+)-ALDH2,
pET-32a(+)-ALDH2,
and pET-SUMO-ALDH2 recombinant plasmids using genetic engineering
methods. Among the three recombinant plasmids, pET-SUMO-ALDH2 was
our best choice according to total protein expression (Figure A). The ALDH2 cDNA fragments
were ligated to the pET-SUMO expression vector, which was the most
effective and widely used system for ALDH2 expression in E. coli. PCR detection and DNA sequencing confirmed
that no changes occurred in the sequence of the target gene. We transformed
the identified recombinant plasmids into BL21(DE3) competence and
then selected three positive monoclonal colonies for amplification
and culture. They were identified by sodium dodecyl sulfate-polyacrylamide
gel electrophoresis (SDS-PAGE) and western blot (Figure B,C).
Figure 1
Identification of the
recombinant ALDH2 plasmids expression in
the bacterial expression system. Comparison of the recombinant ALDH2
plasmids by SDS-PAGE (A); lane 1, pET-28a(+)-ALDH2 recombinant plasmids;
lane 2, pET-32a(+)-ALDH2 recombinant plasmids; line 3, pET-SUMO-ALDH2
recombinant plasmids. Identification of three positive clones by SDS-PAGE
(B) and western blot (C). Ctrl, BL21(DE3); M, marker; S, supernatant;
P, pellet.
Identification of the
recombinant ALDH2 plasmids expression in
the bacterial expression system. Comparison of the recombinant ALDH2
plasmids by SDS-PAGE (A); lane 1, pET-28a(+)-ALDH2 recombinant plasmids;
lane 2, pET-32a(+)-ALDH2 recombinant plasmids; line 3, pET-SUMO-ALDH2
recombinant plasmids. Identification of three positive clones by SDS-PAGE
(B) and western blot (C). Ctrl, BL21(DE3); M, marker; S, supernatant;
P, pellet.
Optimal
Expression Conditions for Exploring
ALDH2
The molecular weight of the His-SUMO-ALDH2 protein
was predicted to be 70 kDa by web-based software (http://web.expasy.org/comedpute.pi). We used electrophoresis to analyze the effects of the four most
commonly studied parameters (temperature, IPTG concentration, incubation
time, and shaker rotation speed) to optimize the expression conditions
of the ALDH2 recombinant protein in the bacterial expression system.
SDS-PAGE and BandScan5 software were used to compare the band density
on the gel, showing that maximum production of the recombinant protein
occurring at an insoluble fraction of ALDH2 was obtained after induction
by 0.3 mM IPTG at 37 °C and 100 rpm for 10 h. The maximal soluble
fraction of ALDH2 was obtained after induction by 0.3 mM IPTG at 16
°C and 70 rpm for 12 h (Figure A–D).
Figure 2
Exploring the optimal expression conditions
of the recombinant
ALDH2 protein. Effect of preincubation temperature (A), IPTG concentration
(B), time (C), and rotation speed (D) on recombinant ALDH2 production
(total protein analysis). Ctrl, the total proteins expression levels
of E. coli BL21(DE3) competent cells;
M, marker; S, supernatant; P, pellet.
Exploring the optimal expression conditions
of the recombinant
ALDH2 protein. Effect of preincubation temperature (A), IPTG concentration
(B), time (C), and rotation speed (D) on recombinant ALDH2 production
(total protein analysis). Ctrl, the total proteins expression levels
of E. coli BL21(DE3) competent cells;
M, marker; S, supernatant; P, pellet.
Purification of the Recombinant ALDH2 from
Soluble Fraction
ALDH2 with His tag had good binding affinity
chromatography through nickel ions, and the nonspecific binding part
flowed out to the N1 penetration peak with a low concentration of
imidazole. The high concentration of imidazole competed with the His
tag for nickel ion groups, causing the target protein to flow out
into the N2 elution peak (Figure A). The protein in the elution peak was subjected to
gel filtration chromatography to remove imidazole and replace the
buffer (Figure B).
Figure 3
Purification
of the recombinant ALDH2 protein from soluble fraction.
Purification by affinity chromatography [N1, penetration peak-impure
protein (3327 mAu); N2, elution peak-interest protein (622 mAu)] (A);
gel filtration chromatography [G1 and G2, interest protein (97 mAu)]
(B). Purification of G1 G2 peak fractions by affinity chromatography
[N1, penetration peak-interest protein (238 mAu); N2, elution peak-impure
protein (155 mAu)] (C); gel filtration chromatography [G, interest
protein (16 mAu)] (D).
Purification
of the recombinant ALDH2 protein from soluble fraction.
Purification by affinity chromatography [N1, penetration peak-impure
protein (3327 mAu); N2, elution peak-interest protein (622 mAu)] (A);
gel filtration chromatography [G1 and G2, interest protein (97 mAu)]
(B). Purification of G1 G2 peak fractions by affinity chromatography
[N1, penetration peak-interest protein (238 mAu); N2, elution peak-impure
protein (155 mAu)] (C); gel filtration chromatography [G, interest
protein (16 mAu)] (D).The protein in the elution
peak was cleaved by Ulp1 for the second
affinity and gel filtration chromatography, and the results showed
that the G UV absorption value was only 16 mAu (Figure C,D). In summary, after purification of ALDH2
expressed in soluble form, the final yield was very low, so we studied
ALDH2 expressed in the form of IBs.
Refolding
and Purification of ALDH2
ALDH2 has a highly hydrophobic
N-terminal structural domain, and
heterologous expression studies for protein characterization are laborious
once the recombinant protein is present in IBs. Initially, this protocol
consisted of washing the IBs with buffer [4 M urea, 10% glycerol,
50 mM Tris pH 8.0, 100 mM NaCl, 10 mM EDTA, and 10 mM dithiothreitol
(DTT)] followed by denaturing with buffer (8 M urea, 10% glycerol,
50 mM Tris pH 8.0, 100 mM NaCl, 10 mM EDTA, and 10 mM DTT). Two steps
appear to be inappropriate for the high efficiency of ALDH2 refolding
protocol development. After that, we observed protein denaturation
by dropwise addition of 6 M guanidine hydrochloride (Gua-HCl) solution
to the IBs in which constant dripping allowed better protein denaturation;
this fact seems to be related to the kinetics of the protein.[21] A 6 M Gua-HCl solution had more than 95% dissolution
capacity, and the dissolution was fast without causing covalent modification
of the recombinant proteins. Another critical step was the protein
renaturation procedure in which glycerol was essential for the stabilization
of the hydrophobic regions of ALDH2. As shown in Figure A, the protein purity was higher
after refolding. Refolding proteins (35 mg) were cleaved by Ulp1,
as verified by SDS-PAGE (Figure B). The SDS-PAGE results indicated a 56 kDa band, corresponding
to ALDH2, which was predicted by web-based software (http://web.expasy.org/compute.pi). The His-SUMO tag and ALDH2 were separated into two parts by enzyme
digestion, and total proteins were purified by affinity and gel filtration
chromatography (Figure C,D).
Figure 4
Refolding and purification of ALDH2. SDS-PAGE analysis of ALDH2
denaturation and renaturation (A); M, marker; lane 1, total proteins;
lane 2, ultrasonic supernatant; lane 3, washing pellet; lane 4, resuspension
pellet; lane 5, ultrafiltration liquid. Digestion of renatured ALDH2
by Ulp1 (B); lanes 1 and 2, Ulp1 digestion of total proteins; lane
3, total proteins. Purification of the renatured ALDH2 by affinity
chromatography [N1, penetration peak-interest protein (736 mAu); N2,
elution peak-impure protein (64 mAu)] (C) and gel filtration chromatography
[G1, G2, G3, interest protein (260, 281, 283 mAu)] (D).
Refolding and purification of ALDH2. SDS-PAGE analysis of ALDH2
denaturation and renaturation (A); M, marker; lane 1, total proteins;
lane 2, ultrasonic supernatant; lane 3, washing pellet; lane 4, resuspension
pellet; lane 5, ultrafiltration liquid. Digestion of renatured ALDH2
by Ulp1 (B); lanes 1 and 2, Ulp1 digestion of total proteins; lane
3, total proteins. Purification of the renatured ALDH2 by affinity
chromatography [N1, penetration peak-interest protein (736 mAu); N2,
elution peak-impure protein (64 mAu)] (C) and gel filtration chromatography
[G1, G2, G3, interest protein (260, 281, 283 mAu)] (D).Purification and characterization of humanALDH2 have rarely
been
reported. They usually obtained ALDH2 from human[22] or grass carp[23,24] liver, but the yield
and purity were low, and the activity was questionable. Zheng et al.
reported that this protein has been expressed in the insect cell sf9
and an E. coli expression system with
a specific activity of 1.10 U/mg. However, the yield was very low.[25] Zhao et al. reported that ALDH2 cDNA and 6×His
tags were cloned into pPIC9K.[26] The recombinant
protein was expressed in P. pastoris GS115 and purified by Ni2+-Sepharose affinity chromatography.
After purification of the fermentation supernatant, the enzyme had
a specific activity of 1.2 U/mg. The yield was approximately 16 mg/L.[26] During the process of ALDH2 expression, the
growth cycle of P. pastoris is longer,
and the secretion of protein is serious.The final ALDH2 yield
was 33.89 mg/L (Table ). In this work, we developed an effective
strategy based on expression and purification to obtain ALDH2, which
enabled us to perform an initial characterization of ALDH2 in the
quantity and concentration range that can contribute to future intractable
functional projects.
Table 1
Summary of the Total
Protein Refolding
and Purification from 1 L of E. coli BL21 (DE3)
steps
concentration (mg/mL)
volume (mL)
total protein (mg)
crude
extract
12.4
32
396.8
refolding protein
2.67
68
181.6
nickel affinity column
0.97
49.4
47.9
Sephadex G-25
0.24
141.2
33.89
Identification of Purified ALDH2
The proteins in the
penetration peak and the elution peak of affinity
chromatography were separately collected and identified by SDS-PAGE
and western blot. One band at a molecular weight of approximately
13 kDa was His-SUMO, and the other band at approximately 56.5 kDa
was ALDH2 (Figure A,B). Freeze-dried ALDH2 was analyzed by SDS-PAGE. Preliminary analysis
using BandScan software showed that the purity of ALDH2 was greater
than 95%, and the purification efficiency was relatively high (Figure C).
Figure 5
Identification of purified
ALDH2. Identification of the chromatographic
products by SDS-PAGE (A) and western blot (B); lane 1, total proteins;
lane 2, Ulp1 digestion products; lane 3, Ulp1; N1, penetration peak;
N2, elution peak. Analysis of freeze-drying ALDH2 by SDS-PAGE (C).
Ions identified using MS (D). Protein sequence alignment of the MS
identification of samples with human ALDH2. Identical amino acid residues
are shown in red (E).
Identification of purified
ALDH2. Identification of the chromatographic
products by SDS-PAGE (A) and western blot (B); lane 1, total proteins;
lane 2, Ulp1 digestion products; lane 3, Ulp1; N1, penetration peak;
N2, elution peak. Analysis of freeze-drying ALDH2 by SDS-PAGE (C).
Ions identified using MS (D). Protein sequence alignment of the MS
identification of samples with humanALDH2. Identical amino acid residues
are shown in red (E).At present, with the
development of biological spectrometry technology
sensitivity, specific degrees, and continuous high throughput, the
application of spectrometry technology in proteomics is increasing.
Currently, the most widely used technologies include electrospray
ionization mass spectrometry and IC-MS-MS (Q-TOF).[27] Peptide mass fingerprinting (PMF) of ALDH2 is shown in Figure D. It was interesting
to note that the amino acid sequences of 10 peptide fragments containing
a total of 209 amino acid residues were 100% identical to humanALDH2
(gi: 48146098) (Figure E).
Detection of ALDH2 Activity by HPLC
When ALDH2 was not added, the absorbance of 2-hydroxy-3-nitrobenzaldehyde
(2H3N-BA) at UV 280 nm was 632 mAU (Figure A); after 89 pmol/L, ALDH2 was added to the
reaction system, and the absorbance was reduced to 344 mAU (Figure B), so it could be
determined that the ALDH2 we purified was biologically active. To
determine which storage method could better maintain ALDH2 activity,
ALDH2 stored in three different ways was separately detected by HPLC.
The results showed that the activity of freeze-dried protein was the
highest (Figure C),
so we freeze-dried ALDH2 in large quantities and stored it at −80
°C. When 893 pmol/L ALDH2 was added, the enzyme activity tended
to plateau, and the calculated specific activity of ALDH2 was 6.1
× 104 U/mg (Figure D).
Figure 6
Detection of ALDH2 activity. Detection of 0 pmol/L (A)
and 89 pmol/L
ALDH2 catalytic substrate 2H3N-BA by HPLC (B). Detection of ALDH2
protein activity under different saving conditions (C). Different
concentrations of the ALDH2 catalytic substrate 2H3N-BA by HPLC detection
(D). Data are mean ± SD of five independent experiments. *, P < 0.05; #, P > 0.05.
Detection of ALDH2 activity. Detection of 0 pmol/L (A)
and 89 pmol/L
ALDH2 catalytic substrate 2H3N-BA by HPLC (B). Detection of ALDH2
protein activity under different saving conditions (C). Different
concentrations of the ALDH2 catalytic substrate 2H3N-BA by HPLC detection
(D). Data are mean ± SD of five independent experiments. *, P < 0.05; #, P > 0.05.
Conclusions
The
objective of this study was to produce biologically active
humanALDH2 in a prokaryotic expression system. We obtained high purity
refolding protein that was purified by two chromatography steps. Such
studies have been facilitated by the improvement of existing techniques
and the development of new techniques. This purification protocol
is valuable to further research on the three-dimensional structure
and function of ALDH2 and can contribute to a better understanding
of the role of ALDH2 in human pathogenicity and relevant pharmaceutical
development.
Materials and Methods
Construction of Recombinant Plasmids
Coding sequences
(CDSs) of the humanALDH2 gene (GenBank accession
number: CR456991.1) were obtained from the database nucleotide sequence.
The rare codons in E. coli were compared
with the ALDH2 sequence; subsequently, the target genes were designed
by web-based software such as GeneOptimizer (Thermo Fisher Scientific,
USA),[28] Gene script (http://www.genescript.com),
and E. coli rare codon analyzer2 (http://www.faculty.ucr.edu). The optimized sequences were synthesized by Generay Biotechnology
Company (Shanghai, China), cloned into a pUC-SP vector, and delivered
to our lab. A Basic Local Alignment Search Tool (BLAST) program at
the National Center for Biotechnology Information (NCBI) was used
for database searches and nucleotide sequence analysis. Multiple sequence
alignments of nucleic acids and amino acids were performed by using
ClustalW of the BioEdit program.The ALDH2 bases were amplified
by PCR using oligonucleotide sequence primers [Generay Biotechnology
Company (Shanghai, China)] as follows: forward (5′ ATGCTGCGTGCTGCTCG
3′) and reverse (5′ TTAAGAGTTTTTCTGCGGAA 3′).
PCR was performed with one cycle at 94 °C for 5 min followed
by 30 cycles of denaturation for 10 s at 98 °C, annealing for
30 s at 55 °C, and extension for 1.5 min at 72 °C and a
final extension step for 9 min at 72 °C. The PCR product was
separated by agarose gel electrophoresis and recycled from the gel
using an agarose gel DNA extraction kit (Axygen, USA). The product
was ligated to the pET-SUMO expression vector (Invitrogen, USA) with
T4 DNA ligase (Figure ), and then the ligation product was transformed into E. coli DH5α competent cells. The recombinant
plasmid pET-SUMO-ALDH2 was confirmed by PCR and analyzed by DNA sequencing
[Generay Biotechnology Company (Shanghai, China)] and finally transformed
into BL21 (DE3) competent cells [CWBIO, Beijing, China].
Figure 7
Multiple cloning
site information of the pET-SUMO vector.
Multiple cloning
site information of the pET-SUMO vector.
Optimization of ALDH2 Expression Conditions
in Bacterial Hosts
E. coli BL21 (DE3) host strains transformed with the pET-SUMO-ALDH2 recombinant
plasmid were used to inoculate 20 mL of Luria-Bertani (LB) medium
supplemented with 50 μg/mL kanamycin and grown overnight at
37 °C with shaking at 100 rpm on a vertical oscillator (Crystal,
USA). Twenty microliters of this overnight preculture served to inoculate
20 mL of LB medium in 50 mL Erlenmeyer flasks. When the optical density
at 600 nm (OD600) of the culture reached approximately
0.4–0.6, the expression of recombinant ALDH2 was induced by
adding various concentrations (0–2 mM) of isopropyl-β-d-thiogalactoside (IPTG, Sigma), and shaking was continued at
50 rpm, 70 rpm, and 100 rpm for 0–12 h at different temperatures
(16, 28, and 37 °C). To analyze the expression levels and profiles,
total proteins from the post-induction culture were further analyzed
by SDS-PAGE and western blot.
Extraction
of Intracellular Protein
Bacterial cells were centrifuged
at 10,000g for
15 min, washed with PBS twice, and resuspended in 40 mL of lysis buffer
(20 mM sodium phosphate, 0.5 M NaCl, and 10 mM imidazole, pH 7.4).
Lysozyme (1 mg/mL) and deoxyribonuclease I (20 μg/mg) were added
on ice for 30 min and homogenized using an ultrasonic sonicator continuously
for 16 min with pulses of 5–7 s intervals at a frequency of
300 W in an ice bath. The lysate was centrifuged at 12,000g at 4 °C for 10 min to separate IBs from the soluble
fraction. The supernatant presenting the soluble fraction was directly
used for protein purification, and the pellet presenting the IB fraction
was collected to perform ALDH2 refolding.
Protein
Refolding from IBs
High-level
expression of many recombinant proteins in E. coli leads to the formation of highly aggregated proteins commonly referred
to as IBs.[29] The IBs were easily isolated
by centrifugation from the cytoplasm and periplasmic space fraction
and washed twice with buffer (0.5% Triton X-100, 50 mM Tris pH 8.0,
300 mM NaCl, 10 mM EDTA, and 10 mM DTT) to remove contaminant soluble
proteins by centrifugation at 12,000g for 15 min
at 4 °C. Triton X-100 can remove the E. coli membrane and cell wall material. Then, they were resuspended in
50 mL of buffer (50 mM Tris pH 8.0, 100 mM NaCl, 10 mM EDTA, and 10
mM DTT) and homogenized using an ultrasonic sonicator continuously
for 6 min. Each fraction of the resuspended IBs was solubilized in
freshly prepared denaturing buffer [6 M Gua-HCl, 10% glycerol, 50
mM Tris pH 8.0, 100 mM NaCl, 10 mM EDTA, and 10 mM DTT]. The final
concentration reached 30 mg/mL, and the sample was subsequently incubated
for 10 h at 4 °C with gentle stirring. Gua-HCl and DTT were used
to solubilize the resuspended IBs. Denaturant buffer (100 mM Tris
pH 8.0, 400 mM l-arginine, and 2 mM EDTA) was added dropwise
to the IBs at 4 °C, and the renaturation time of each milliliter
was 8 h.[30] After buffer-exchange steps
via ultrafiltration and concentration, centrifugation at 10,000g for 30 min at 4 °C was performed using a Centricon
tube (Amicon Ultra15 Centrifugal Filter Devices, Millipore), and the
denaturant agent was gradually removed.
Purification
and Proteolytic Cleavage of Recombinant
Protein
An AKTA Avant 150 (GE Healthcare Bioscience, USA)
was used for protein purification. The supernatant containing the
soluble fraction of His-SUMO-ALDH2 was loaded onto a 5 mL His-Trap
affinity column chromatography machine (GE Healthcare Bioscience,
USA) and equilibrated with wash buffer (20 mM sodium phosphate, 0.5
M NaCl, and 10 mM imidazole, pH 7.4). Then, an elution buffer (20
mM sodium phosphate, 0.5 M NaCl, and 250 mM imidazole, pH 7.4) was
applied to elute the fusion protein. The elution fractions were collected
and further loaded onto a Sephadex G-25 (16/40) column equilibrated
with buffer (20 mM Tris-HCl and 50 mM NH4COOCH3). Ulp1 (Solarbio, China) was used to cut purified products with
SUMO tags. Then, the cut products were subjected to second affinity
and gel filtration chromatography, and finally, the target proteins
were collected.The other method was to purify the protein expressed
in the form of IBs. Ulp1 was added to the refolding total protein
according to the protein qualities and then incubated at 16 °C
to release ALDH2 following the manufacturer’s instructions
(Invitrogen, USA).[31] The purification method
of the proteolytic cleavage product of IBs was only one-step affinity
and gel filtration chromatography. The purified protein was preserved
in the following three groups: the first group was treated with 50%
glycerol, the second group was treated by freeze-drying, and the third
group was not treated and stored at −80 °C for 2 weeks
until subsequent biophysical activity experiments.[32]
Mass Spectrometry Identification
and Activity
Analysis of ALDH2
IC-MS-MS (Q-TOF) (BGI, Beijing) was used
to determine ALDH2. HPLC was used to analyze the activity of ALDH2
treated in different ways. ALDH2 (89 pmol/L) was preincubated with
PBS containing 1 mM NAD+, and activity was measured upon
the addition of 100 μM 2H3N-BA and incubation for 30 min at
37 °C by its conversion to 2-hydroxy-3-nitrobenzoic acid using
HPLC analysis.[33] In the same way, HPLC
was used for analysis of freeze-dried ALDH2 enzyme catalysis kinetics
at different concentrations (89, 179, 357, 714, and 893 pmol/L). The
conversion product was subjected to an HPLC-based analysis on its
absorbance at 340 nm as described previously.[34]
SDS-PAGE and Western Blot Analysis of Recombinant
Protein
Protein concentration was determined by using a Micro
bicinchoninic acid protein assay reagent kit (Beyotime, China) with
standard bovinealbumin. The protein loading quality was 10–20
μg. Each sample was identified by molecular weight using electrophoresis
in SDS-polyacrylamide gel and analyzed after SDS-PAGE or western blot.[6] The 10% running gel separation proteins were
washed with deionized water and stained with 0.1% Coomassie Brilliant
Blue R-250 on a shaker for 2.5 h. The decolorizing solution was composed
of 454 mL of methanol, 75 mL of glacial acetic acid, and 471 mL of
deionized water. The liquid was replaced every 20 min until the decolorization
was complete and then replaced with deionized water. The bands were
analyzed by taking photos.The 10% running gel separation proteins
were subsequently transferred to a PVDF membrane (BioRad, USA). The
membrane was incubated for 2 h in blocking solution containing 5%
skimmed milk powder dissolved in pH 7.4 PBS contained with 0.05% Tween
20 (PBST). The membrane was washed three times before incubation with
the primary His tag antibody and ALDH2 antibody (Abcam) overnight
at 4 °C. The next day, the membrane was washed three times before
incubation for 80 min at room temperature with a goat anti-mouse IgG/goat
anti-rabbit IgG secondary antibody diluted (1:5000). After washing
with PBST, the immunoreactive bands were detected using a Super ECL
reagent (HaiGene, China).
Statistical Analysis
Data from independent
experiments are shown as the mean ± standard deviation (SD).
Statistical analysis between two groups was performed by two-tailed
Student’s t-test. P <
0.05 was considered statistically significant (*). All statistical
analyses were completed using GraphPad Prism 8.0 software.
Authors: Krishan Gopal Thakur; Ravi Kumar Jaiswal; Jinal K Shukla; T Praveena; B Gopal Journal: Protein Expr Purif Date: 2010-07-01 Impact factor: 1.650
Authors: Sayqa Arif; Alessandra Borgognone; Erica Lai-Sze Lin; Aine G O'Sullivan; Vishal Sharma; Nigel E Drury; Ashvini Menon; Peter Nightingale; Jorge Mascaro; Robert S Bonser; John D Horowitz; Martin Feelisch; Michael P Frenneaux; Melanie Madhani Journal: Br J Pharmacol Date: 2015-04-29 Impact factor: 8.739