Sandip Paul1, Pritam Roy2, Sourav Das3, Soumen Ghosh3, Pinki Saha Sardar4, Anjoy Majhi1. 1. Department of Chemistry, Presidency University, 86/1 College Street, Kolkata 700 073, India. 2. Department of Chemistry, Indian Institute of Technology, Kharagpur 721302, India. 3. Centre for Surface Science, Physical Chemistry Section, Department of Chemistry, Jadavpur University, Kolkata 700032, West Bengal, India. 4. Department of Chemistry, The Bhawanipur Education Society College, Kolkata 700020, India.
Abstract
The photophysics of 4-azidocoumarin (4-AC), a novel fluorescent coumarin derivative, is well established by the investigation of the alteration of the microheterogeneous environment comprising two types of systems: supramolecular systems, cyclodextrins (CDs), and biomolecular systems, serum albumins (SAs). The enhanced emission of the ligand with the organized assemblies like α-CD, β-CD, and γ-CD by steady-state and time-resolved fluorescence and fluorescence anisotropy at 298 K is compared with those of bovine serum albumin (BSA) and human serum albumin (HSA). The remarkable enhancement of the emission of ligand 4-AC along with the blue shift of the emission for both the systems are visualized as the incorporation of 4-AC into the hydrophobic core of the CDs and proteins mainly due to reduction of nonradiative decay process in the hydrophobic interior of CDs and SAs. The binding constants at 298 K and the single binding site are estimated using enhanced emission and anisotropy of the bound ligand in both the systems. The marked enhancement of the fluorescence anisotropy indicates that the ligand molecule experiences a motionally constrained environment within the CDs and SAs. Rotational correlation time (θc) of the bound ligand 4-AC is calculated in both the categories of the confined environment using time-resolved anisotropy at 298 K. Molecular docking studies for both the variety of complexes of the ligand throw light to assess the location of the ligand and the microenvironment around the ligand in the ligand-CD and ligand-protein complexes. Solvent variation study of the probe 4-AC molecule in different polar protic and aprotic solvents clearly demonstrates the polarity and hydrogen-bonding ability of the solvents, which supports the alteration of the microenvironments around 4-AC due to binding with the biomimicking as well as biomolecular systems. Dynamic light scattering is employed to determine the hydrodynamic diameter of free BSA/HSA and complexes of BSA/HSA with the ligand 4-AC.
The photophysics of 4-azidocoumarin (4-AC), a novel fluorescent coumarin derivative, is well established by the investigation of the alteration of the microheterogeneous environment comprising two types of systems: supramolecular systems, cyclodextrins (CDs), and biomolecular systems, serum albumins (SAs). The enhanced emission of the ligand with the organized assemblies like α-CD, β-CD, and γ-CD by steady-state and time-resolved fluorescence and fluorescence anisotropy at 298 K is compared with those of bovineserum albumin (BSA) and human serum albumin (HSA). The remarkable enhancement of the emission of ligand 4-AC along with the blue shift of the emission for both the systems are visualized as the incorporation of 4-AC into the hydrophobic core of the CDs and proteins mainly due to reduction of nonradiative decay process in the hydrophobic interior of CDs and SAs. The binding constants at 298 K and the single binding site are estimated using enhanced emission and anisotropy of the bound ligand in both the systems. The marked enhancement of the fluorescence anisotropy indicates that the ligand molecule experiences a motionally constrained environment within the CDs and SAs. Rotational correlation time (θc) of the bound ligand 4-AC is calculated in both the categories of the confined environment using time-resolved anisotropy at 298 K. Molecular docking studies for both the variety of complexes of the ligand throw light to assess the location of the ligand and the microenvironment around the ligand in the ligand-CD and ligand-protein complexes. Solvent variation study of the probe 4-AC molecule in different polar protic and aprotic solvents clearly demonstrates the polarity and hydrogen-bonding ability of the solvents, which supports the alteration of the microenvironments around 4-AC due to binding with the biomimicking as well as biomolecular systems. Dynamic light scattering is employed to determine the hydrodynamic diameter of free BSA/HSA and complexes of BSA/HSA with the ligand 4-AC.
The microenvironment
responsive ligands or drugs have been an emergent
application in the recent times for investigations on drug designing
or drug delivery research. Perturbation or alteration of the microenvironment
surrounding a ligand/drug molecule is a prime concern of the current
medical science and life science projects.[1−9] The nature of the microenvironment surrounding a ligand or drug
or any other molecule has been explored by a variety of spectroscopic
techniques, among which fluorescence spectroscopy seems to be the
most widely used technique.[2,10−12] Fluorescent probes are powerful tools for biosensing and bioimaging
because of their high sensitivity, specificity, high fluorescence
intensity, excellent solubility, biocompatibility, and simple preparation.[13] Hence, development of fluorescent probes, specifically
for biological settings and clinical settings, has attracted intense
interest.[13−16] Till date, different kinds of fluorescent probes are commercially
available and can be used in biological investigations.[13] Coumarin molecules, as a family of molecules,
exhibit a wide range of fluorescence emission properties; hence, they
are used as a fluorescent probe, and they also have a wide range of
biological importance.[17−26] For example, azidocoumarins are known to be used in biomolecular
photoaffinity labelling.[27] It may also
be noted that photostability is an important criteria for a molecule
to become a good fluorescent probe.[28] The
use of fluorescent probes in some biomolecular systems and biomimicking
systems, in many times, helps to amend some structural change of these
systems, advocating the challenging roles of those probes toward the
environments.[3−6,9,29−32]The fluorescent probe containing polar groups have enormous
features
in their solvatochromic studies as fluorescence emission maxima and
quantum yield are very much dependent on the nature of the solvents.[33] The polarity/polarizability, refractive index,
and dielectric constant of the solvent molecules or the intermolecular
hydrogen bonding between the fluorophore and the solvent[33−35] modulates the photophysics of the excited state of the fluorophore
and also the microenvironment of the fluorophore.[33−35] Hence, thorough
studies on several coumarin dyes report that the coumarin molecules
are very much dependent on solvent polarity which govern the fluorescence
quantum yield and also the local environment of the molecule where
they are situated.[36,37] Hence, these solvent dynamic
studies of coumarin dye molecules might play an imperative role in
use as a fluorescent biomarker.[38−41]The photophysical processes of the ligands/drugs
exploiting the
biomimicking systems have achieved enormous attention for the biological
processes occurring in the molecular level. Several organized assemblies
or supramolecular hosts like cyclodextrins (CDs), micelles, reverse
micelles, lipids, microemulsions, vesicles, membranes, crown ethers,
cryptands, calixarenes, and cucurbiturils are promising encapsulating
compounds which have versatile use in mimicking the biomolecular systems
to address their microenvironment in the drug-binding study and in
specific delivery of the drug.[9,32,42−45] One of the most important and promising host among these is the
CD molecules. CD molecules are widely used as a molecular container
in the pharmaceutical industry, biochemistry, material chemistry,
catalysis, and electronics with proficient entrapment of the ligand/drug
molecule having comparable sizes forming host–guest supramolecular
complexes, which are the mimicking model of the enzyme/protein–ligand/drug
complexes.[29,30,32,42,43,46−50] CD molecules have the ability to alter the physical, chemical, and
biological properties of guest molecules through the formation of
inclusion complexes by capturing suitable hydrophobic guests into
the hydrophobic cavity in aqueous media without forming a covalent
bond.[32,46,47,49,51] Generally, CDs are
α, β, and γ types containing 6, 7, and 8 glucopyranose
units, respectively. The CD molecules have an internal cavity accessible
to the guest molecules of proper dimension through an opening of 4.5–5.3,
6.0–7.0, and 7.5–8.5 Å for α-CD, β-CD,
and γ-CD, respectively; the depths of all remaining are more
or less the same (7.9 Å).[32,46,47,49,51] The hydrophobic cavity with a constrained environment directs one
probe or ligand molecule to form encapsulated complexes with a proper
geometry inside the microenvironment of the CD cavity.[32,46,47,49,51] Such investigations in present day research
exploiting photophysical aspects have gained interest to sense the
various photoprocesses with exact mechanism[32,46,47,49,51] like excited--state proton transfer,[32] intramolecular charge transfer, and so on.[34,35]The interactions of a fluorescent probe with the biomimicking
molecules
are taken into deliberation to demonstrate the microenvironment of
the biomolecules.[4−6] Human serum albumin (HSA) is a globular protein consisting
of 585 amino acids, whereas bovineserum albumin (BSA) consists of
582 amino acids and is cross-linked by 17 disulfide bonds, and it
shows 76% similarity to BSA.[23] The beauty
of these proteins in physiological function is to bind and transport
several molecules like fatty acids, nutrients, steroids, and other
important drugs.[19,52,53] Therefore, researchers are studying their interaction and binding
properties with other molecules and ligands, and they have been extensively
explored.[5,54−59] Recently, interactions of several molecules, viz., anti-cancer drug
crizotinib and angiotensin-converting enzyme inhibitor ramipril and
lisinopril, with BSA have been reported.[60−62]The aim
of the work presented here is to explore the prospective
expediency of the optical properties of the ligand 4-azidocoumarin
(4-AC) (Scheme ) and
its interaction with the relevant biomolecules or biomimicking molecules
to demonstrate the microenvironment inside the biomolecules or biomimicking
molecules. The alteration of the microenvironment inside the CD cavity
or protein nanocore after inclusion of the fluorophore was investigated
by steady-state and time-resolved emission studies at 298 K by monitoring
the enhancement of 4-AC emission due to interaction with all CD molecules
and serum albumin (SA) proteins in an aqueous buffer medium of pH
7, which impelled us to understand the nature of binding and location
of binding of the ligand in the CD (s) and protein (s). The modulation
of the photophysics of 4-AC in the presence of CD and proteins has
been utilized to determine the binding constants of the complexes
and the binding site (s) of the CD and proteins probing the enhanced
emission of the bound ligand at 298 K. The variation of steady-state
anisotropy data of the bound ligand in CDs and SAs has been utilized
to find out the gradual increase of rigidity of environment of the
ligand in the complexes. The time-resolved anisotropy of the complexes
of the ligand in the presence of CD and protein by monitoring the
ligand emission has been measured to determine the rotational constant
values (θc) of the ligand 4-AC, which helps us to
substantiate the interaction of the ligand with the CD and protein
molecules and the nature of perturbation of the ligand environment
in all CD molecules and both the SAs, as revealed in the molecular
docking studies. Also, the nature of environment could be visualized
by understanding the effect of polarity of different polar protic
and aprotic solvents by the room temperature steady-state and time-resolved
emission studies. Also, the change in hydrodynamic diameter upon ligand
binding calculated from the dynamic light scattering (DLS) data concludes
that the ligand induced perturbation of the microenvironment of SAs.
Thus, the modulation of the photophysics of 4-AC in the presence of
different microheterogeneous environments might be supportive to show
the efficacy of a ligand to open up new avenues toward targeted drug
delivery projects.
Scheme 1
Molecular Structure of 4-AC or 4-Azido-2H-chromen-2-one
(Considering the Atom Numbering for Molecular Docking Studies (Not
the Regular IUPAC Numbering[6])
Adapted with permission from
ref (6). Copyright
The Royal Society of Chemistry and the Centre National de la Recherche
Scientifique 2017.
Molecular Structure of 4-AC or 4-Azido-2H-chromen-2-one
(Considering the Atom Numbering for Molecular Docking Studies (Not
the Regular IUPAC Numbering[6])
Adapted with permission from
ref (6). Copyright
The Royal Society of Chemistry and the Centre National de la Recherche
Scientifique 2017.
Results and Discussion
Steady-State
and Time-Resolved Fluorescence Studies of 4-AC
in Different Pure Solvents
Understanding the Nature of Microenvironment
around the Fluorophore
Investigations of the microenvironment
surrounding the fluorophore
4-AC using steady-state and time-resolved fluorescence spectroscopy
of 4-AC in different polar protic and polar aprotic pure solvents
were carried out. The absorption spectra in all cases show two absorption
bands. One is the intense (π–π*) band in the region
280–300 nm and the other is a relatively weak (n−π*)
in the region 310–350 nm. The absorption bands of 4-AC remain
almost invariant in the presence of different solvents (figure not
shown). The absorption band maxima of 4-AC in the presence of pure
solvents are listed in Table . The single emission band was recorded monitoring the respective
λmax of the absorption band of 4-AC in various solvents,
as shown in Figure . The positions of the emission band in different solvents are provided
in Table . The emission
maxima of 4-AC in different solvents are red-shifted with increasing
polarity of the solvent. The red shift is ∼50 nm, which supports
the polar nature of the emissive state, and the variations of the
emission maxima of 4-AC in different solvents (Table ) are in accordance with its empirical polarity
parameters ET(30) by Reichardt.[63,64]
Table 1
Photophysical Data of 4-AC in Solvents
of Different Polarities at 298 K
lifetime
(ns)
solvents
λ max for emission (nm)
Δυ (cm–1)
π*a
αb
βc
ET(30)d(kcal/mol)
dielectric constant (ε)
quantum yield (φ)
τ1(α1) (ns)
τ2(α2) (ns)
τave (ns)
χ2
rate of the radiative transition (kr × 10–7) (s–1)
rate of the nonradiative transition (knr × 10–8) (s–1)
water
453.6
9010
1.09
1.17
0.18
63.1
78.36
0.056
4.94 (3.34%)
0.85 (96.66%)
0.99
0.96
5.66
9.54
EG
452.0
9126
0.88
0.90
0.52
56.3
37.7
0.033
4.95 (7.77%)
1.98 (92.23%)
2.21
1.21
1.49
4.38
MeOH
451.0
8787
0.60
0.93
0.62
55.5
32.6
0.035
4.94 (11.51%)
1.37 (89.49%)
1.79
0.91
1.96
5.39
EtOH
448.0
8734
0.54
0.83
0.77
51.9
22.4
0.021
4.02 (14.77%)
2.33 (85.23%)
2.58
1.22
0.81
3.79
isopropanol
450.0
9028
0.48
0.76
0.95
48.4
19.92
0.014
4.85 (31.76%)
1.90 (68.24%)
2.84
1.01
0.49
3.47
ACN
406.6
6558
0.73
0.00
0.69
46.0
37.5
0.026
4.43 (48.65%)
1.08 (51.35%)
2.71
1.21
0.96
3.59
DMSO
400.4
6081
0.98
0.00
0.76
45.0
46.6
0.236
5.52 (50.68%)
1.65 (49.32%)
3.61
1.26
6.54
2.11
benzonitrile
407.7
6722
0.90
0.00
0.41
41.5
25.9
0.012
5.69 (6.67%)
1.39 (93.33%)
1.68
1.22
0.71
5.88
DOX
403.8
6485
0.55
0.00
0.37
36.0
2.21
0.019
5.66 (47.84%)
1.77 (52.16%)
3.63
1.14
0.52
2.70
π* is the polarity or polarizability
effects of the solvent.
α is the hydrogen bond donor
acidity of the solvent.
β is the hydrogen bond acceptor
basicity of the solvent.
ET(30)
is the Dimroth–Reichardt empirical polarity parameter of the
solvent.
Error in the measurements
is ±0.1
ns.
Figure 1
Fluorescence
spectra of 4-AC at 298 K in different pure solvents.
λexc = 330 nm; excitation and emission band pass
= 10 and 5 nm, respectively.
Fluorescence
spectra of 4-AC at 298 K in different pure solvents.
λexc = 330 nm; excitation and emission band pass
= 10 and 5 nm, respectively.π* is the polarity or polarizability
effects of the solvent.α is the hydrogen bond donor
acidity of the solvent.β is the hydrogen bond acceptor
basicity of the solvent.ET(30)
is the Dimroth–Reichardt empirical polarity parameter of the
solvent.Error in the measurements
is ±0.1
ns.The emission of 4-AC
molecule is governed by the polarity/polarizability
π*, hydrogen bond-donating ability α, and hydrogen bond-accepting
ability β of different solvents,[63,64] and for this,
Kamlet–Taft multiparameter approach[65] is used. These parameters for different solvents and the Stokes
shift of emission of 4-AC in different solvents are provided in Table . A linear regression
analysis has been employed considering all these parameters and the
Stoke shift (Δ) in solvents of different polarities and gives
the relation[65] (Figure S1)Using all solvent parameters simultaneously,
a well and good relationship
between the Kamlet–Taft solvent parameters[65] and the Stokes shift emission of the 4-AC molecule is observed
(Figure S1) [slight deviation is observed
for isopropanol and dioxane (DOX)].This clearly put a signature of
the dependence of the polarity, the hydrogen-bond donating ability,
as well as the hydrogen bond-accepting ability of the solvents on
the emission of 4-AC.The plot of transition energy (ET in
kcal/mol) of the emission of 4-AC (10 μM) in different solvents
against the solvent polarity index ET(30)-scale
(kcal/mol) by Reichardt[63,64] is presented in Figure A and found to be
almost linear. The plot shows that the transition energy of the emission
of 4-AC molecule decreases with the increase in the ET(30) value[63,64] of different solvents.
This supports that the emissive state is stabilized with an increase
in the solvent polarity index, and thus the emission shifts toward
higher wavelength (Table ). Also, the bathochromic shift of the emission maxima was
also observed with increasing dielectric constant of the medium, especially
when the polar protic solvent is used (Table ). Figure B also represents the plot of transition energy of
the emission of 4-AC in different polar protic solvents against the
hydrogen bond-donating ability (α, Table ) of the solvents. This reveals that the
hydrogen bond-donating ability (α) of the polar protic solvents
increases the stability of the emissive state, which again confirms
the probe-solvent hydrogen-bonding interactions.
Figure 2
(A) Plot of transition
energy (ET in
kcal/mol) of enhanced emission of 4-AC (10 μM) in different
solvents against the solvent polarity index ET(30)-scale (kcal/mol): (1) water, (2) EG, (3) methanol (MeOH),
(4) ethanol (EtOH), isopropanol (iPrOH), (5) ACN,
(6) DMSO, (7) benzonitrile (PhCN), and (8) DOX; λexc = 330 nm; excitation and emission band pass = 10 nm each. (B) Plot
of transition energy (kcal/mol) of the emission of 4-AC in different
solvents against the hydrogen bond-donating ability parameter alfa
(α). (C) Plot of quantum yield against the hydrogen bond-donating
ability parameter alfa (α). (D) Plot of average lifetime values
of the solvents against the solvent polarity index ET(30)-scale (kcal/mol).
(A) Plot of transition
energy (ET in
kcal/mol) of enhanced emission of 4-AC (10 μM) in different
solvents against the solvent polarity index ET(30)-scale (kcal/mol): (1) water, (2) EG, (3) methanol (MeOH),
(4) ethanol (EtOH), isopropanol (iPrOH), (5) ACN,
(6) DMSO, (7) benzonitrile (PhCN), and (8) DOX; λexc = 330 nm; excitation and emission band pass = 10 nm each. (B) Plot
of transition energy (kcal/mol) of the emission of 4-AC in different
solvents against the hydrogen bond-donating ability parameter alfa
(α). (C) Plot of quantum yield against the hydrogen bond-donating
ability parameter alfa (α). (D) Plot of average lifetime values
of the solvents against the solvent polarity index ET(30)-scale (kcal/mol).The quantum yield of emission of 4-AC in different polar protic
and aprotic solvents is presented in Table . The plot of quantum yield against the hydrogen
bond-donating ability (α) (Figure C) shows that the quantum yield decreases
with decreasing α for the polar protic solvents, which determines
the intermolecular hydrogen-bonding ability of 4-AC with the solvents,
and also the polarity of the solvents operates in the determination
of quantum yield of emission of 4-AC in polar protic solvents. For
polar aprotic solvents (α = 0), the quantum yield increases
as the polarity of the solvent (π*-value) increases (some deviation
observed for benzonitrile, Table ). In dimethyl sulphoxide (DMSO), the quantum yield
value is observed to be the highest (Table).Lifetime measurements monitoring
the emission maxima of 4-AC molecules
in different polar protic and aprotic solvents are recorded at 298
K using λexc = 290 nm. The lifetime values show biexponential
decay in all solvents and are listed in Table . The plot of the average lifetime of the
excited state and the ET(30) value of
the different polar protic and aprotic solvents (Figure D) shows that the lifetime
of the emissive state increases with a decrease in the ET(30) value from polar protic solvents to polar aprotic
solvents. For water, the recovered lifetimes observed with a longer
component 4.94 ns with a minor contribution (0.0334) and a shorter
component 0.85 ns with a major contribution (0.9666) (Table ) infer the presence of solvent-shielded
4-AC molecule and free 4-AC molecule, respectively. Both the components
along with their contributions are changed with the change in polarity
of the solvents (Table ). The shorter lifetime component values (∼0.85 ns) are slightly
increasing with the decrement of their percent contribution with change
in the solvent polarity, which might be due to the intermolecular
H-bonding interaction in different extent with the solvents having
different polarity. This also confirms that the polarity and the hydrogen-bonding
ability of 4-AC with other solvents are responsible for the enhancement
of the lifetime from polar protic to polar aprotic solvents. The striking
observation is that the lifetime components with the fractional contribution
of 4-AC in DMSO (polar aprotic) and DOX (nonpolar) could be considered
by the prevalence of specific solute–solvent interaction between
the solvent and the probe molecule.The effect of the solvent
polarity will also be judged by calculating
the radiative[2] and nonradiative rate constants[2] in different solvents using eqs and 3 and are provided
in Table .It is observed that nonradiative decay rates are increased
for
polar protic solvents due to intermolecular hydrogen bonding of 4-AC
with the polar solvent molecules. For DMSO, the nonradiative rate
constant is found to be 2.11 × 108 s–1 compared to 9.54 × 108 s–1 in
water (Table ).
Photophysical Modulation of 4-AC in Biomimetic (Aqueous CD)
Environments
Steady-State Absorption and Fluorescence
Studies of the Ligand
4-AC at 298 K
The absorption spectra of 4-AC in the presence
of different CD environments are provided in Figure . The absorption spectra are slightly changed
on addition of CDs with no significant shift in λmax, indicating the formation of host–guest complexes.
Figure 3
Absorption
spectra of 4-AC (10 μM) in aqueous buffer and
in the presence of α-CD, β-CD, and γ-CD solutions
at 298 K.
Absorption
spectra of 4-AC (10 μM) in aqueous buffer and
in the presence of α-CD, β-CD, and γ-CD solutions
at 298 K.Figure illustrates
the modulation of the photophysics of 4-AC in the presence of confined
environments of CD family and with respect to the intensity enhancement
and shift of the emission maxima. The fluorescence spectra of the
ligand 4-AC (10 μM) in aqueous buffer solution (pH 7) is characterized
by a broad and unstructured band with a maxima at ∼452 nm (Figure ) upon excitation
at 290 nm. In aqueous buffer solution, the fluorescence quantum yield
(φD) of the ligand is very low (Table , Figure , and insets of Figure A–C). It increases with lowering of
the polarity function (Figure A–C). The interactions of 4-AC with CD molecules are
observed with a significant enhancement of the emission intensity
along with considerable blue shifts of the emission maxima on gradual
addition of α-CD, β-CD, and γ-CD to the aqueous
buffer solution of pH 7 (Figure A–C). The shift of the emission wavelength for
α-CD is ∼44 nm, for β-CD is ∼46 nm, and
for γ-CD is ∼45 nm from the emission maxima of free 4-AC
(∼452 nm) (Figure , Table ).
This suggests that the inclusion of the ligand molecule is inside
the hydrophobic core of the respective CD molecules, with the reduced
polarity in the surroundings of the ligand molecule as compared to
the bulk aqueous phase. The quantum yield (φD) of
the enhanced emission of 4-AC (10 μM) in the presence of CDs
is calculated (Table ), and the variations of quantum yields of emission with the concentration
of CD are provided in Figure . The enhancement of the fluorescence quantum yield values
of 4-AC molecules in the presence of CD molecules is approximately
1.5 to 1.8 times as compared to that in aqueous buffer of pH 7. The
lower value in the case of γ-CD indicates that the microenvironment
surrounding the 4-AC molecule in γ-CD is more polar than those
in the α-CD and β-CD molecules (Table ). The encapsulation of 4-AC molecule inside
the CD cavity decreases the chances of intermolecular hydrogen bonding
reaction of 4-AC with the solvent molecule (water/buffer), and therefore,
deactivation of nonradiative decay channels, which operate through
intermolecular H-bond through solvent molecules, results in the enhancement
of the emission of the ligand molecule in the presence of the CD molecules.[32,46]
Figure 4
(A)
Fluorescence spectra of 4-AC (10 μM) at 298 K with varying
concentrations of α-CD; curves (a–i) represent 0, 1.5,
3.0, 4.5, 6.0, 7.5, 9.0, 10.5, and 12.0 μM α-CD, respectively;
(B) fluorescence spectra of 4-AC (10 μM) at 298 K with varying
concentrations of β-CD; curves (a–h) represent 0, 4.0,
8.0, 12.0, 16.0, 20.0, 24.0, and 32.0 μM β-CD, respectively;
(C) fluorescence spectra of 4-AC (10 μM) at 298 K with varying
concentrations of γ-CD; curves (a–k) represent 0, 6.0,
12.0, 18.0, 24.0, 30.0, 36.0, 42.0, 48.0, 54.0, and 60.0 μM
γ-CD, respectively; λexc = 290 nm; excitation
and emission band pass = 10 and 5 nm, respectively, in each case.
Insets of (A–C): variation of fluorescence quantum yield (φF) of 4-AC (10 μM) in aqueous buffer monitoring the enhanced
emission with increasing concentrations of α-CD, β-CD,
and γ-CD, respectively. (D) Variation of fluorescence anisotropy
(r) of 4-AC (10 μM) in aqueous buffer monitoring
the enhanced emission with increasing concentrations of α-CD,
β-CD, and γ-CD.
Table 2
Photophysical Parameters and Binding
Parameters of 4-AC (10 μM) in the Presence of Different CD Systems
at 298 Ka
system
λmax(nm)
quantum yield (φF) (× 102)
<τ>
(ns)
steady state anisotropy (r)
rotational correlation time
(θc) (ns)
rate of the
radiative transition (kr × 10–7) (s–1)
rate of the nonradiative transition (knr × 10–8) (s–1)
binding
constantsb (Kb) (M–1) (for 1:1 complex)
R2
ΔG0 (kJ mol–1)
buffer (pH 7)
452.6
0.991
0.99
0.00297
1.001
10.00
α-CD (12 μM)
408.4
1.667
1.11
0.02108
2.098
1.502
8.86
6.38 × 105
0.9131
–33.12
β-CD (32 μM)
406.4
1.714
2.13
0.02192
1.941
0.805
4.69
3.17 ×
105
0.9678
–31.38
γ-CD (60 μM)
407.2
1.382
2.64
0.02205
2.151
0.523
3.74
0.47 × 105
0.9512
–26.65
λexc = 290 nm.
Error in the measurements is
±5%.
(A)
Fluorescence spectra of 4-AC (10 μM) at 298 K with varying
concentrations of α-CD; curves (a–i) represent 0, 1.5,
3.0, 4.5, 6.0, 7.5, 9.0, 10.5, and 12.0 μM α-CD, respectively;
(B) fluorescence spectra of 4-AC (10 μM) at 298 K with varying
concentrations of β-CD; curves (a–h) represent 0, 4.0,
8.0, 12.0, 16.0, 20.0, 24.0, and 32.0 μM β-CD, respectively;
(C) fluorescence spectra of 4-AC (10 μM) at 298 K with varying
concentrations of γ-CD; curves (a–k) represent 0, 6.0,
12.0, 18.0, 24.0, 30.0, 36.0, 42.0, 48.0, 54.0, and 60.0 μM
γ-CD, respectively; λexc = 290 nm; excitation
and emission band pass = 10 and 5 nm, respectively, in each case.
Insets of (A–C): variation of fluorescence quantum yield (φF) of 4-AC (10 μM) in aqueous buffer monitoring the enhanced
emission with increasing concentrations of α-CD, β-CD,
and γ-CD, respectively. (D) Variation of fluorescence anisotropy
(r) of 4-AC (10 μM) in aqueous buffer monitoring
the enhanced emission with increasing concentrations of α-CD,
β-CD, and γ-CD.λexc = 290 nm.Error in the measurements is
±5%.In our present
work, the steady-state fluorescence studies of 4-AC
molecule have also been carried out in the presence of varying concentrations
of all CD molecules with excitation at 330 nm (i.e., near n−π*
transition) where the remarkable decrease in the fluorescence intensity
of the 4-AC molecule was observed along with the appreciable blue
shift of the emission maxima. The occurrence of this fluorescence
quenching is probably due to the unavailability of nonbonding electrons
present on the heteroatom of the 4-AC molecule. With the addition
of increasing concentration of CDs, probably the nonbonding electrons
present on the heteroatom of the 4-AC molecule are involved in the
interaction with the polar group present on the outer part of CDs
(−OH groups); hence the availability of nonbonding electrons
becomes minimum to respond to the fluorescence of the 4-AC molecule,
the possibility of n−π* transition becomes less, and
a reduction in the percentage of radiative decay is observed. A representative
figure for the fluorescence quenching of 4-AC with the γ-CD-molecule
is provided in Figure . This situation could be in use to assess the actual entrapped moiety
inside the CD cavity as well as the part of the 4-AC molecule present
in the bulk solvent. This occurrence might be suggesting the extent
of efficiency of the host molecules to envelop the fluorophore from
external perturbation, which increases the radiative processes. This
observation can be rationalized from the molecular docking studies
(see the next section).
Figure 5
Fluorescence spectra of 4-AC (10 μM) at
298 K with varying
concentrations of γ-CD; curves (a–h) represent 0, 6.0,
12.0, 18.0, 24.0, 30.0, 36.0, and 60.0 μM γ-CD, respectively;
λexc = 290 nm; excitation and emission band pass
= 10 and 5 nm, respectively, in each case. Inset: Fluorescence excitation
spectra (λmonitored = λmax of emission)
of 4-AC in the presence of increasing concentration of γ-CD;
curves (a–d) represent 0, 12.0, 30.0, and 60.0 μM γ-CD,
respectively.
Fluorescence spectra of 4-AC (10 μM) at
298 K with varying
concentrations of γ-CD; curves (a–h) represent 0, 6.0,
12.0, 18.0, 24.0, 30.0, 36.0, and 60.0 μM γ-CD, respectively;
λexc = 290 nm; excitation and emission band pass
= 10 and 5 nm, respectively, in each case. Inset: Fluorescence excitation
spectra (λmonitored = λmax of emission)
of 4-AC in the presence of increasing concentration of γ-CD;
curves (a–d) represent 0, 12.0, 30.0, and 60.0 μM γ-CD,
respectively.The excitation spectra of the
4-AC molecule monitoring the corresponding
enhanced emission of the 4-AC–CD complexes were measured. The
representative excitation spectra for 4-AC−γ-CD complexes
(inset of Figure )
illustrate that the progressive increment of the 290 nm band with
the disappearance of the 330 nm band clearly amplifies the role of
π–π* and n−π* transitions in the emission
processes of 4-AC molecule in the presence of varying concentrations
of CD molecules.
Time-Resolved Fluorescence Studies of the
Ligand 4-AC at 298
K
The modulation of the excited-state photophysics of a fluorescence
probe in the presence of the microenvironment of some biomacromolecular
(proteins/peptides/enzymes etc.)[2,4,9,56] or biomimetic (CD/micelle/lipid/vesicles
etc.)[32,66] environment could be interpreted from the
time-resolved fluorescence decay measurement. This technique helps
to visualize the change in the lifetime values of the probe with the
alteration of the microenvironment from the bulk aqueous region to
the nanocore of the CD or protein molecules.The lifetime of
the probe 4-AC molecule in aqueous phosphate buffer of pH 7 was recovered
and was best fitted as a biexponential function with an average lifetime
value of 0.99 ns (100%) (Figure , Table ), monitoring at 450 nm. The lifetime values including a fast component
(∼0.85 ns) with a major contribution (∼97%) and a relatively
slower component (∼4.94 ns) with very little contribution (∼3%)
illustrated the presence of free 4-AC molecule and the solvated cluster
of the probe 4-AC molecule, respectively. Now, the lifetime values
of the 4-AC molecule in the presence of all CD molecules are measured
and listed in Table . The lifetime decay of the encapsulated 4-AC molecule with β-CD
and γ-CD molecules was deconvoluted with the biexponential fitting
curve (Figure ).
Figure 6
(A) Fluorescence
decay of 4-AC (10 μM) at 298 K in aqueous
phosphate buffer (pH 7) monitoring the enhanced emission of 4-AC with
varying concentrations of β-CD; curves (a–f) represent
0, 8.0, 12.0, 16.0, 20.0, and 28.0 μM AP, respectively; λexc = 290 nm; inset: variation of singlet-state average lifetime
(<τ>) of 4-AC in aqueous buffer monitoring the λexc of emission with increasing concentration of β-CD.
(B) Fluorescence decay of 4-AC (10 μM) at 298 K in aqueous phosphate
buffer (pH 7) monitoring the enhanced emission of 4-AC with varying
concentrations of γ-CD; curves (a–f) represent 0, 12.0,
18.0, 30.0, 42.0, and 60.0 μM AP, respectively; λexc = 290 nm; inset: variation of singlet-state average lifetime
(<τ>) of 4-AC in aqueous buffer monitoring λexc of emission with increasing concentration of γ-CD.
Excitation
and emission band pass = 10 and 5 nm, respectively, in each case of
β-CD and γ-CD.
Table 3
Singlet-State Lifetime Data of 4-AC
(10 μM) in the Presence of CDs at 298 K
system
τ1(α) ns
τ2(α) ns
τav (ns)a
χ2
α-CD
0 μM
4.94 (3.34%)
0.85 (96.66%)
0.99
0.96
3 μM
3.98 (3.23%)
0.91
(96.77%)
1.01
0.90
4.5 μM
3.54 (7.09%)
0.84 (92.91%)
1.03
1.01
7.5 μM
3.47 (6.84%)
0.86 (93.16%)
1.04
0.95
9 μM
3.31
(11.16%)
0.79 (88.84%)
1.07
1.02
10.5 μM
3.34 (10.78%)
0.84 (89.22%)
1.11
1.21
β-CD
0 μM
4.94 (3.34%)
0.85 (96.66%)
0.99
0.96
8 uM
3.90 (10.12%)
0.80 (89.88%)
1.11
1.23
12 μM
4.15 (12.82%)
0.89 (87.18%)
1.31
1.15
16 μM
3.89
(23.09%)
0.90 (76.91%)
1.59
0.92
20 μM
3.75 (29.63%)
0.92 (70.37%)
1.76
1.28
28 μM
3.89 (37.47%)
1.07 (62.53%)
2.13
1.15
γ-CD
0 μM
4.94 (3.34%)
0.85
(96.66%)
0.99
0.96
12 μM
4.56 (12.64%)
0.95 (87.36%)
1.41
1.09
18 μM
4.45 (23.24%)
1.25 (76.76%)
1.99
1.20
30 μM
4.36
(36.21%)
1.30 (63.79%)
2.41
1.07
42 μM
4.29 (38.53%)
1.33 (61.47%)
2.47
1.23
60 μM
4.19 (45.55%)
1.35 (54.45%)
2.64
1.17
Error in the measurements is ±0.1
ns.
Table 4
Singlet-State
Lifetime Data of 4-AC
(10 μM) in the Presence of Varying Compositions of EG–Water
Systems at 298 K
system
water
EG
τ1(α) ns
τ2(α)
ns
τav (ns)a
χ2
100
0
4.94 (3.34%)
0.85 (96.66%)
0.99
1.13
80
20
4.31 (5.28%)
0.98 (94.72%)
1.16
1.06
60
40
3.83 (5.73%)
1.02 (94.27%)
1.18
1.22
40
60
3.75 (6.12%)
1.27 (93.88%)
1.42
1.12
20
80
3.68 (6.53%)
1.60 (93.48%)
1.74
1.15
10
90
4.92 (6.72%)
1.74 (93.28%)
1.95
1.24
0
100
4.95 (7.77%)
1.98 (92.23%)
2.21
1.05
Error in the measurements is ±0.1
ns.
(A) Fluorescence
decay of 4-AC (10 μM) at 298 K in aqueous
phosphate buffer (pH 7) monitoring the enhanced emission of 4-AC with
varying concentrations of β-CD; curves (a–f) represent
0, 8.0, 12.0, 16.0, 20.0, and 28.0 μM AP, respectively; λexc = 290 nm; inset: variation of singlet-state average lifetime
(<τ>) of 4-AC in aqueous buffer monitoring the λexc of emission with increasing concentration of β-CD.
(B) Fluorescence decay of 4-AC (10 μM) at 298 K in aqueous phosphate
buffer (pH 7) monitoring the enhanced emission of 4-AC with varying
concentrations of γ-CD; curves (a–f) represent 0, 12.0,
18.0, 30.0, 42.0, and 60.0 μM AP, respectively; λexc = 290 nm; inset: variation of singlet-state average lifetime
(<τ>) of 4-AC in aqueous buffer monitoring λexc of emission with increasing concentration of γ-CD.
Excitation
and emission band pass = 10 and 5 nm, respectively, in each case of
β-CD and γ-CD.Error in the measurements is ±0.1
ns.Error in the measurements is ±0.1
ns.The average lifetime
value of the 4-AC molecule increase on addition
of CD molecules and are consistent with the steady-state fluorescence
spectra. For all cases of the complexes of the 4-AC molecule and CD,
the biexponential decay of the 4-AC molecule has been portrayed by
the slight decrement of the slower component values with an increase
in the percent contribution along with the small increase in the faster
component with a decrease in its percent contribution (Table ). These data pointed out the
extent of the distribution of the 4-AC molecule in bulk aqueous medium
and inside the nanocavity of the CD molecule. Gradual addition of
CD molecules increases the percentage contribution of the longer component
supporting the stronger inclusion of the guest molecule inside the
CD cavity at the expense of the nonradiative decay arising out of
intermolecular H-bonding with the solvent molecules, and the relative
contribution due to free 4-AC molecule in bulk water decreases progressively
in all CD–4-AC complexes (Table ). The occurrence of a multiexponential decay pattern
with the gradual addition of the CD molecules follows the complex
trend in all the CD–guest complexes as the guest 4-AC molecule
resides in a more or less heterogeneous environment. So, taking into
account the average fluorescence lifetime values substantiates the
entrapment of the fluorophore inside the nanocavity of the host CD
molecules as compared to assessing the individual decay values in
all host–guest complexes.The protective actions by the
encapsulation of the guest molecule
from the bulk aqueous environment follow a general trend according
to the shape and size of the CD molecules. The faster component of
lifetime (τ1) (corresponds to the free 4-AC molecule)
illustrated an increased value with an increase in the concentration
of all CD molecules; the order of the increment is γ-CD >
β-CD
> α-CD. For the α-CD–4-AC complex, the host
molecule
experiences very slight change in the lifetime values (an almost constant
value is observed, Table ), thereby inferring the presence of increased bulk viscosity
of the solution inside the host molecules as the cavity size of CD
is increased from α-CD to γ-CD. Moreover, the percent
amplitude associated with slower component of lifetime values demonstrates
that the component of encapsulated guest inside the host molecule
shows an increment in a regular fashion with the increased concentration
of the host molecule along with the progressive decrement of the unbound
probe molecule (Table ). Now, it is more appropriate to note that the percent contribution
of the slower lifetime component (τ2) follows the
order γ-CD > β-CD > α-CD at the saturation
level
of the encapsulation process, which confirms that the degree of encapsulation
is the highest in the cavity of γ-CD and the lowest for α-CD
cavity.The shorter lifetime component values are slightly increasing
with
the varying concentrations of CD molecules (specially for β-CD
and γ-CD) (Table ), which could be rationalized considering the enhancement of the
overall bulk viscosity of the surrounding of 4-AC molecule with the
increase in the concentration of the CD molecules. This situation
could be explained in the presence of the mixed solvents having almost
similar polarity but different viscosities. Fluorescence lifetime
values of 4-AC in the presence of mixed solvents comprising different
proportions of ethylene glycol (EG) (ET(30) = 56.3) and water (ET(30) = 63.1)
showed a gradual increment of average lifetime values (Table ) from the bulk aqueous buffer
solution to varying concentrations of EG. The increase in the shorter
component lifetime values at higher CD concentrations is thus attributed
to the increase in local viscosity around 4-AC and is comparable with
the EG–water system and substantiates the fluorescence spectra
of 4-AC in the presence of varying percentages of the EG–H2O mixture (Figure S2). The microviscosity
of 4-AC in the presence of the highest concentration of CD molecules
is thus nearer to that of the 60:40 water/EG mixture, as observed
also from the emission of 4-AC at higher concentrations of 4-AC.However, the fluorescence quantum yield does not follow the similar
trend as observed for the variation in the average lifetime values
of the CD–guest complexes (Tables and 3). This incongruity
between the steady-state and time-resolved fluorescence studies could
be elucidated by considering the interaction of 4-AC with different
polar protic or aprotic solvents (see previous section). The stability
of the emissive state of 4-AC was explained by the intermolecular
hydrogen-bonding ability of the polar protic solvents resulting in
operation of the nonradiative decay channel through formation of H-bond
between the heteroatom(s) present in the solvent molecule and the
oxygen atom in the polar protic molecules. Generally, an emission
profile of a fluorescence probe with a host molecule like CDs could
not give any clear picture about the proper fraction of the probe
encapsulated within the host and/or the fraction of free probe moving
in the bulk aqueous solvent. The encapsulation also renders the hydrophobicity
of the probe and motional restriction of the probe inside the host
molecules. Hence, the extent of hydrophobicity and motional constraint
(due to steady state anisotropy) due to encapsulation could not be
judged appropriately by the steady-state fluorescence studies. Time-resolved
fluorescence studies for all CD and 4-AC complexes confirm our proposition
very well. Molecular docking studies support this contention.Now, the fluorescence quantum yield (φf) and average
lifetime values (<τf>) of 4-AC are employed
to
determine the radiative decay rate constant (kr) and the nonradiative decay rate constant (knr) for 4-AC emission in the presence of the CD molecules
using eqs and 2.The values of kr and knr for all 4-AC–CD systems
are tabulated in Table . It is obvious that
in the bulk aqueous environment, the nonradiative decay rate is higher,
and in the presence of the CD molecules, the knr values decrease strongly, implying the entrapment of the
4-AC molecule in the hydrophobic environment of the CD cavity.
Steady-State Fluorescence Anisotropy Study of 4-AC at 298 K
Steady-state fluorescence anisotropy measurement provides significant
idea about the nature of the microenvironment around the fluorescent
ligand. It has enormous application potential in the biophysical and
biochemical research because factors affecting the size, shape, or
segmental flexibility of a molecule will affect the observed anisotropy.[2,3] The degree of restriction imposed by the microenvironment of the
fluorophore (ligand/drug) is clearly manifested by the fluorescence
anisotropy studies of the ligand/drug with the supramolecular or biomolecular
systems, which can be exploited for finding out the probable location
of the ligand in different microheterogeneous environments.[2−4,32,46,56,66]The
considerable augmentation of fluorescence anisotropy (r) values of the 4-AC molecule with the progressive addition of three
CD systems, viz., α-CD, β-CD, and γ-CD, have been
figured out in Figure D. These features in all cases allocate the entrapment of the 4-AC
molecule in the internal nanocavity of the CD molecules, which clearly
put some signature of the existence of the motionally constrained
zone of the CD molecules as compared to the free aqueous buffer region.
For all CD–4-AC complexes, the limiting levels of saturation
of the steady-state anisotropy values (r) are almost
similar (∼0.020) (Figure D, Table ), indicating that the judgment about the degree of interaction between
the 4-AC and CD molecules with different nanocavities seems to be
impossible. The probable reason might be that the overall tumbling
motions (major determining factor for the enhancement of the fluorescence
anisotropy) of the 4-AC–CD complexes are almost similar with
respect to dimension in all three cases.
Binding Constant (Kb) for the Association
of the Fluorophore with Supramolecules
Supramolecular system
or biomolecular system can protect fluorophore molecules from any
kind of external perturbation.[32,56] The confinement in
the hydrophobic cavity can lead to changes in various photophysical
and photochemical reactivities of the fluorophore, and this strongly
depends on the value of the binding constant of the binding of the
fluorophore with the supramolecules or biomolecules.The binding
constant (Kb) of the guest 4-AC molecule
with the host-organized assemblies or any other supramolecules is
estimated by determining the binding constant from the fluorescence
intensity of the enhanced emission of the ligand as a function of
added concentrations of CD molecules employing modified Benesi–Hildebrand
equation[9,67]where, F0, F∞, and F are the relative
fluorescence intensities of the
enhanced emission of ligand 4-AC considered in the absence of all
CD molecules, at some intermediate concentration of the CD molecules,
and at a concentration of complete interaction, respectively, K is the binding constant, and [L] is the
concentration of added host CD molecules.A plot of (F∞ – F0)/(F – F0) against [L]−1 provides the binding constant (K) from the slope,
and the linearity of the plots confirms
a 1:1 binding between 4-AC and the CD molecules (Figure ). The binding constant values
and the free energy of binding (ΔG0) obtained for all three CD complexes at 298 K are listed in Table .
Figure 7
Plot of (A) [F∞ – F0]/[F – F0] against [α-CD]−1,
(B) [F∞ – F0]/[F – F0] against [β-CD]−1,
and (C) [F∞ – F0]/[F – F0] against [γ-CD]−1.
Plot of (A) [F∞ – F0]/[F – F0] against [α-CD]−1,
(B) [F∞ – F0]/[F – F0] against [β-CD]−1,
and (C) [F∞ – F0]/[F – F0] against [γ-CD]−1.
Time-Resolved Anisotropy Study of the Ligand
4-AC at 298 K
The time-resolved fluorescence anisotropy is
dependent on the rotational
diffusion and/or rotational relaxation of the fluorophore in the microenvironment
of the supramolecules or biomolecules.[4,9,56] The rotational relaxation of the fluorescence probe
is affected when the fluorescence probe goes from the bulk water to
the CD environment. Hence, to ensure this, the fluorescence anisotropy
decays of the 4-AC molecule in the presence of all CD moieties were
measured. The rotational anisotropy decays of 4-AC in all CD–4-AC
complexes are measured by monitoring the enhanced emission of 4-AC
in the complex with λexc = 290 nm, and from the fitted
curve, the rotational correlation time (θc) of 4-AC
in all CD molecules is recovered as almost similar values ∼2.0
ns. The recovered single exponential values for all CD–4-AC
complexes are summarized in Table . Although determination of the θc value for the free 4-AC molecule is not possible due to limitation
of the detection limit of the instrument, the recovered correlation
times for all CD complexes clearly signify the motional inflexibility
suffered by the 4-AC molecule due to entrapment of the probe inside
the CD cavity (Table ).
Molecular Docking Studies
The interaction of 4-AC with
all CD molecules could be substantiated by molecular docking studies.
The docking studies have been carried out with 4-AC provided in Scheme . The docked pose
of all 4-AC–CD complexes are provided in panel A of Figure . The free energy
of binding obtained from docking studies of the host–guest
complexes is in the following order α-CD > β-CD >
γ-CD
(Table ), which is
comparable with the free energy of binding obtained from the experimental
data for all CD–4-AC complexes. This supports the contention
that α-CD is the stronger binding or encapsulating agent than
β-CD and γ-CD. The docked structures of all three host–guest
complexes illustrate that the azide compound orients itself in a specific
direction, with the phenyl part located within the CD cavity and the
polar functional part away from the cavity (panel A of Figure ). CD preferentially encapsulates
the more hydrophobic part of the azide compound within its cavity.
The orientation of the polar residues of the guest molecule is away
from the CD cavity, which indicates that it can interact with the
solvent molecules outside the CD cavity. This is in confirmation with
the photophysical studies of 4-AC with all CD molecules and also in
the presence of different solvent molecules. The experimental results
showed that the availability of the nonbonding electrons on the heteroatom
of the 4-AC molecule is less due to H-bonding with the −OH
group present in the CD molecule, which retards the emission of 4-AC
upon excitation with 330 nm. This result could be corroborated by
considering the fact that the azide group of the guest molecule is
found to associate itself through H-bonding in the case of the γ-CD
complex, whereas both N and O of the azide compound participate in
H-bonding with the host for α-CD and β-CD (Panel B of Figure , Table ). The number of H-bonding formed
between the host and the guest is maximum for α-CD and minimum
for γ-CD, which suggests that the H-bonding interaction plays
a significant role in stabilizing the host–guest complex (panel
B of Figure , Table ). The fluorescence
quantum yield as well as the binding constant data of the CD–4-AC
complexes support this result obtained from molecular docking studies,
although the time-resolved studies of CD–4-AC complexes generate
a divergence, which might be due to the interplay between the photophysical
dynamics of 4-AC–CD complexes and the solvation dynamics of
the 4-AC-solvent (here aqueous buffer) operational in our case.
Figure 8
Panel (A) represents
the docked pose of 4-AC in the complexes with
α-CD, β-CD, and γ-CD, respectively. Panel (B) represents
H-Bonding distances between ligand atoms and different atoms of CD
molecules of the docked complexes.
Table 5
H-Bonding Distances Between the Ligand
Atom and Different Atoms of the CD Molecules of the Docked Complexes
system
ligand atom
CD atom
distance (Å)
ΔG0 (Kcal mol–1)
α-CD–4AC
N14
C3-OH
2.43
–4.7
N13
C2-OH
2.69
N12
C2-OH
2.64
N12
C3-OH
3.25
O10
C3-OH
3.12
O11
C3-OH
2.01
β-CD–4AC
N14
C3-OH
3.32
–4.1
N13
C3-OH
3.42
N12
C1-O (glycosidic O)
3.71
O10
C2-OH
3.21
O11
C2-OH
1.91
N14
C3-OH
2.92
–3.8
N13
C3-OH
2.93
γ-CD–4AC
N12
C2-OH
3.00
O11
C3-OH
3.21
Panel (A) represents
the docked pose of 4-AC in the complexes with
α-CD, β-CD, and γ-CD, respectively. Panel (B) represents
H-Bonding distances between ligand atoms and different atoms of CD
molecules of the docked complexes.
In Biomolecular Systems
Steady-State
Absorption and Fluorescence Studies Monitoring
Ligand Emission at 298 K
The absorption spectra of free 4-AC
(10 μM) and 4-AC (10 μM) in the presence of BSA (5 μM)
in aqueous medium at 298 K are provided in e Figure S3. Similar spectra for 4-AC (10 μM) are observed in
the presence of HSA. With the addition of SAs, the absorbance is found
to decrease to a small extent, with no significant shift in λmax (Figure S3), which indicates
incorporation of the ligand 4-AC in the protein pocket.The
emission spectra of 4-AC are also modified in the presence of SAs,
similar to that in the CDs. Figure demonstrates the emission
spectra of ligand 4-AC in aqueous buffer solution as a function of
increasing concentrations of SAs with λexc = 330
nm at 298 K. There has been a steady increase in the emission of 4-AC
with an appreciable blue shift of the emission maxima of the ligand
in the presence of proteins (Figure ). The quantum yield (φD) of the enhanced
emission of the ligand increases approximately 1.5 times in the complex
with BSA and 2.1 times in the complex with HSA as compared to that
of pure ligand in the same aqueous buffer (pH 7) (Table , Figure S4IA,B). The blue shift of the emission maxima of the ligand
from ∼452 nm (free ligand) to ∼434 nm (for BSA) and
∼438 nm (for HSA) with increasing protein concentrations suggests
that the ligand molecule experiences a less polar or more hydrophobic
environment in both the SA–ligand complexes as compared to
the free ligand.
Figure 10
Change
in hydrodynamic diameter of (A) BSA and (B) HSA in the presence
and absence of 4-AC prepared in phosphate buffer of pH 7.0. The red
line represents the average value of hydrodynamic diameter of free
BSA in phosphate buffer of pH 7.0. Error bars are given to each experimental
point. The standard deviation of hydrodynamic diameter is ±0.2
nm.
Figure 9
Fluorescence spectra of 4-AC (10 μM) at 298 K with
varying
concentrations of BSA; curves (a–h) represent 0, 0.030, 0.091,
0.125, 0.152, 0.182, 0.244, and 0.303 μM BSA, respectively;
λexc = 330 nm; excitation and emission band pass
= 10 and 5 nm, respectively. Inset: Fluorescence spectra of 4-AC (10
μM) at 298 K with varying concentrations of HSA; curves (a–g)
represent 0, 0.071, 0.143, 0.200, 0.278, 0.345, and 0.417 μM
HSA, respectively; λexc = 330 nm; excitation and
emission band pass = 10 and 5 nm, respectively.
Table 6
Singlet-State Lifetime
and other Photophysical
Parameters of 4-AC Monitored at the Enhanced Emission in Aqueous Buffer
(pH 7) and in Serum Albumins at 298 K
system
λmaxa(nm)
quantum yield (φf)
τ1(α) ns
τ2(α) ns
τav (ns)b
χ2
steady state anisotropy (r)
rotational correlation time (θc) (ns)
rate of the radiative transition (kr × 10–7) (s–1)
rate of the non-radiative transition (knr × 10–8) (s–1)
free 4-AC (10 μM)
453.2
0.056
0.64 (100%)
0.64
1.16
0.030
8.8
14.75
+0.030 μM BSA
451.6
0.057
0.63 (85.88%)
1.13 (14.12%)
0.70
1.05
0.012
+0.059 μM BSA
446.0
0.067
0.63 (85.87%)
2.96 (14.13%)
0.96
1.17
0.077
+0.091 μM BSA
443.0
0.071
0.64 (82.35%)
3.21 (17.65%)
1.09
1.33
0.083
+0.125 μM BSA
440.4
0.074
0.63 (74.35%)
3.21 (25.65%)
1.29
1.13
0.103
+0.152 μM BSA
437.8
0.076
0.63 (70.95%)
3.28 (29.05%)
1.40
1.07
0.121
+0.182 μM BSA
435.6
0.075
0.64 (68.88%)
3.35 (31.12%)
1.48
1.22
0.134
+0.244 μM BSA
433.0
0.084
0.64 (60.85%)
3.36 (39.15%)
1.70
1.12
0.148
+0.303 μM BSA
434.2
0.088
0.57 (57.83%)
3.39 (42.17%)
1.76
1.04
0.164
2.7
5.0
5.18
+0.071 μM HSA
448.2
0.078
0.64 (94.52%)
2.32 (5.48%)
0.73
1.21
0.060
+0.143 μM HSA
444.2
0.094
0.64 (90.72%)
3.14 (9.28%)
0.87
1.20
0.091
+0.200 μM HSA
442.0
0.104
0.63 (79.75%)
3.74 (20.25%)
1.26
1.17
0.126
+0.278 μM HSA
441.4
0.112
0.64 (74.88%)
3.70 (25.12%)
1.41
1.15
0.144
+0.345 μM HSA
439.8
0.120
0.63 (68.57%)
3.69 (31.43%)
1.59
1.20
0.159
+0.417 μM HSA
438.4
0.123
0.64 (64.43%)
3.70 (35.57%)
1.73
1.21
0.183
+0.476 μM HSA
438.0
0.123
0.64 (62.39%)
3.78 (37.61%)
1.82
1.13
0.195
+0.556 μM HSA
437.9
0.120
0.64 (61.05%)
3.81 (38.95%)
1.87
1.17
0.191
3.2
6.4
4.71
λexc = 375 nm.
Error in the measurements is ±0.1
ns.
Fluorescence spectra of 4-AC (10 μM) at 298 K with
varying
concentrations of BSA; curves (a–h) represent 0, 0.030, 0.091,
0.125, 0.152, 0.182, 0.244, and 0.303 μM BSA, respectively;
λexc = 330 nm; excitation and emission band pass
= 10 and 5 nm, respectively. Inset: Fluorescence spectra of 4-AC (10
μM) at 298 K with varying concentrations of HSA; curves (a–g)
represent 0, 0.071, 0.143, 0.200, 0.278, 0.345, and 0.417 μM
HSA, respectively; λexc = 330 nm; excitation and
emission band pass = 10 and 5 nm, respectively.Change
in hydrodynamic diameter of (A) BSA and (B) HSA in the presence
and absence of 4-AC prepared in phosphate buffer of pH 7.0. The red
line represents the average value of hydrodynamic diameter of free
BSA in phosphate buffer of pH 7.0. Error bars are given to each experimental
point. The standard deviation of hydrodynamic diameter is ±0.2
nm.λexc = 375 nm.Error in the measurements is ±0.1
ns.Figure S4IIA,B represents the variation
of fluorescence anisotropy (r) of emission of ligand
4-AC as a function of protein concentration for both the SAs. The
steady-state anisotropy (r) value in aqueous buffer
solution is 0.03 (Table ). In the presence of SAs, the anisotropy values gradually increase
with an increase in the protein concentration and then reaches a saturation
value (0.164 for BSA and 0.191 for HSA) (Figure S4IIA,B, Table ). This implies enhanced degree of motional restriction imposed on
the ligand in the microenvironment of the proteins. In the case of
HSA, a higher value of anisotropy at the saturation concentrations
(Table ) indicates
that the probe molecule is experiencing a somewhat more rigid environment
in the core of HSA, which indicates a greater binding of the 4-AC
molecule in the HSA environment than that in the BSA environment (see
the next section). Though these observations are in good agreement
with the fluorescence quantum yield as well as fluorescence lifetime
data, the binding constant values determined are in contradiction.
This observation can be rationalized considering some specific interactions
such as hydrogen bonding centered around the protein and the heteroatoms
present in the ligand molecules, leading to some additional restriction
imposed on the motion of the overall molecule or trapping of the probe
in some motionally constrained site such as the cleft or crevice of
the protein. Some steric constrain may also play a role in fixing
the spatial orientation of the probe molecule.[68] Molecular docking studies also help to get a clear vision
of this observation (see the next section).The bindings between
SAs and 4-AC are analyzed by determining the
binding constant from the fluorescence intensity of enhanced emission
of ligand as a function of added protein concentration employing modified
Benesi–Hildebrand equation (eq )[9,67] with the linear plot (Figure S5), and the binding constant values obtained
for BSA and HSA at 298 K are 9.80 × 106 and 7.02 ×
106 M–1, respectively, with the binding
site n = 1 for both the cases.[9]
Time-Resolved Fluorescence Studies at 298
K
The singlet-state
lifetime of the ligand 4-AC is measured in both the SAs by monitoring
the enhanced emission of the ligand. The decay of emission of the
ligand in aqueous buffer (pH 7) is best fitted with a single exponential,
and the lifetime recovered is 0.64 ns (100%) (Table ). The lifetime of the ligand 4-AC is also
measured as a function of the added concentration of BSA and HSA by
monitoring the enhanced emission maxima in each case using λexc = 375 nm (Table ). The representative decay profiles are presented in Figure S6. The decays were best fitted with two
components where χ2 is found to be close to 1 in
each case on addition of BSA and HSA (Table ). The biexponential decays are estimated
with a lifetime component close to that of the free ligand in aqueous
buffer (∼0.64 ns) and another component of increased lifetime
(∼1.12–3.39 ns for BSA and ∼2.32–3.81
ns for HSA) (Table ). The relative contribution of the shorter component decreases gradually
with a simultaneous increase of the contribution of the longer component
for both the protein–ligand systems (Table ). Hence, the increased lifetime values in
both the protein–ligand complexes suggest the more rigid environment
than the ligand 4-AC experiencing gradually upon binding with the
protein. The average lifetime increases to 1.76 ns in BSA and 1.87
ns in HSA (Figure S4IIIA,B, Table ) compared to 0.64 ns for free
ligand in aqueous buffer with the gradual increase in the concentration
of SAs, which are consistent with the steady-state fluorescence data
(Table ).The
time-resolved fluorescence anisotropy is dependent on the rotational
diffusion and/or rotational relaxation of the fluorophore in the microenvironment
of the proteins. The anisotropy decays of 4-AC in both the SA–ligand
complexes are measured by monitoring the enhanced emission of 4-AC
in the complex with λexc = 375 nm, and from the fitted
curve, the rotational correlation times (θc) of 4-AC
in BSA and HSA are recovered as 2.7 and 3.2 ns. There is an increased
value of θc of 4-AC in the presence of the microenvironments
of the SAs (Table ). Table clearly
demonstrates the rotational restriction experienced by the ligand
molecule. The binding constant of the 4-AC–HSA complex is less
than that of the 4-AC–BSA complex, and the larger θc value in HSA indicates more rotational restriction of 4-AC
in the presence of HSA compared to that in BSA.The decrease
of the polarity around the ligand 4-AC in the microenvironment
of SAs might be elucidated by calculating the radiative (kr) and nonradiative rate constants (knr) (Table ) calculated using eqs and 3. The reduction in the nonradiative rate
constants data of the ligand in the proteineous environments supports
the rigidity of the microenvironment, and hence there is an increase
of θc value compared to that of the free buffer medium.Molecular docking studies
are employed to determine the probable location of the drug molecule
in the binding pocket of the protein molecule and also the microenvironment
of the ligand before and after complexation of the protein by the
experimental findings in the SA–ligand complexes. The best
docking pose of the protein–ligand complexes could be directly
correlated with the experimental findings by considering the minimum
score in the FlexX run for both the complexes of BSA and HSA,[6] which supports the stronger binding of the ligand
4-AC for BSA in the complexes than that for HSA, as evidenced in the
binding constants data. Docking studies show that the ligand (4-AC)
binds close to site I in domain II in both cases of BSA and HSA but
with somewhat higher binding affinity in the case of the latter protein.The present experimental studies of the enhancement of the ligand
by the interaction of 4-AC with the biomolecular systems to get the
idea about the microenvironment of the ligand could be judged in a
different approach than that in our earlier study[6] of fluorescence quenching studies.
(i) Consideration of the
Accessible Surface Area of the Ligand
Atoms
This is much more prominent in the case of BSA than
HSA, suggesting that the ligand becomes almost shielded by the amino
acid residues in the former protein (Table ). In both the cases O10, O11, and N14 show
maximum change in the accessible surface area (ΔASA) value,
which indicates that electrostatic interaction may play a key role
in protein–ligand interaction, thereby bringing these electronegative
atoms close to the amino acid residues. Hence, the larger binding
constant values for the BSA–4-AC complex compared to those
for the HSA–4-AC complex determined experimentally by different
methods could be addressed for involvement of different atoms by the
change in their ASA values in the complexes.
Table 7
Change
in the ASA (Å) of Different
Atoms of Ligand 4-AC in Both Complexes of BSA and HSA
free 4-AC
4-AC–BSA
4-AC–HSA
atom no.
ASA (Å2)
ASA (Å2)
ΔASA
(Å2)
ASA (Å2)
ΔASA (Å2)
C1
22.834
0.054
22.780
2.838
19.996
C2
22.857
0.929
21.928
12.698
10.159
C3
17.486
1.051
16.435
9.763
7.723
C4
3.833
0
3.833
1.741
2.092
C5
7.521
0
7.521
1.467
6.054
C6
20.961
0
20.961
0
20.961
O10
14.393
0
14.393
0.928
13.465
C7
5.728
0
5.728
0.753
4.975
C8
15.316
0
15.316
0
15.316
C9
14.945
0
14.945
1.852
13.093
N12
18.597
0
18.597
2.211
16.386
N13
14.121
0
14.121
0.739
13.382
N14
63.986
1.35
62.636
6.496
57.49
O11
42.853
0
42.853
1.079
41.774
285.431
3.384
282.047
42.565
242.866
(ii) Consideration of the
Change in the ASA of Different Amino
Acids due to Binding
Our previous studies[6] of protein–ligand docking studies on 4-AC–SA
complexes show the different amino acid residues present within 5
Å of the ligand 4-AC. The ASA values provided in our earlier
work[6] have been considered in another approach
to establish the constrained environment around the ligand. Table shows the different
residues of SAs which change in ASA (Å2) values upon
binding with 4-AC. It is noticed that a greater number of polar residues
(Lys 195, Trp 214, Arg 218, and Asp 451) have a higher ΔASA
value for HSA, whereas only two polar residues (Trp 213 and Asp 450)
become highly shielded in the case of BSA (Table ). Also, the residues which lose over 10
Å2 in their ASA values upon binding with the ligand
4-AC are accountable in the binding process. It has been observed
that six residues, viz., Lys 195, Trp 214, Arg 218, Pro 447, Asp 451,
and Val 455, lose over 10 Å2 in their ASA values in
the binding of the ligand in the HSA–4-AC complex, whereas
five residues, viz., Arg 194, Leu 197, Trp 213, Asp 450, and Leu 480
lose over 10 Å2 in their ASA values in the BSA–4-AC
complex (Table ).
This clearly indicates that the ligand molecule is situated in more
constrained environments of HSA than in BSA, though the binding constant
is greater for BSA than that for HSA. Hence, the anisotropy as well
as the θc value monitoring the enhanced emission
of the ligand is more for the HSA–4-AC complex as compared
to the BSA–4-AC complex (Table ).
Table 8
Changes in the ΔASA(Å2) of the Amino Acid Residues of Docked Complexes of BSA and
HSA with 4-AC
BSA–4-ACa
HSA–4-ACa
amino acid residues
ΔASA (Å2)
amino
acid residues
ΔASA (Å2)
Arg 194
11.98
Lys 195
32.34
Leu 197
24.22
Leu 198
8.11
Arg 198
6.31
Trp 214
14.52
Ser 201
5.76
Arg 218
17.63
Leu 210
1.13
Val 343
2.22
Trp 213
28.4
Val 344
1.62
Arg 217
7.34
Pro 447
10.76
Val 342
8.5
Cys 448
7.23
Ser 343
8.86
Asp 451
17.55
Leu 346
6.64
Tyr 452
7.36
Asp 450
17.34
Ser 454
1.82
Ser 453
7.6
Val 455
10.92
Leu 454
5.47
Leu 480
13.64
total (including
all residues)
153.72
total (including all the residues)
132.65
Underline residues are polar residues.
Underline residues are polar residues.
(iii) Consideration of
the Effect of H-Bonding Between Different
Atoms
The atoms involved in H-bonding are obtained from the
structure analysis tool in Chimera software.[6] It is observed that for the BSA–4-AC complex, three Arg residues
are involved in H-bonding, whereas for the HSA–4-AC complex,
only one Arg residue is involved in the binding process. The polarity
of the Trp environment might be increased due to the presence of an
Arg residue near a Trp residue due to the charge of the Arg side chain,
the formation of a hydrogen bond of one of the NH groups on the Arg
side chain with the indole ring, or the interaction through a NH−π
bond with the indole ring.[69−71] This definitely confirms the
greater motional restriction of 4-AC in the microenvironment of HSA
as compared to BSA, thereby making θc value more
for the HSA–4-AC complex as compared to the BSA–4-AC
complex (Table ).
DLS Measurement
DLS measurements have been carried
out to investigate the hydrodynamic diameters (RH) of free SAs and the complexes of SAs with 4-AC. The average
hydrodynamic diameter (RH) of free BSA
(within the concentration range of 9.9 × 10–4 to 0.02 mM) and HSA (within the concentration range of 4.01 ×
10–4 to 0.03 mM) in the presence of phosphate buffer
of pH 7.0 is found to be 3.80 and 3.78 nm, respectively (Figure ). The values obtained
for free BSA and HSA are in good agreement with that of the earlier
data.[72,73] In the presence of 4-AC (10 μM), the RH values of both BSA and HSA are found to be
greater than their corresponding average values in their free states
and have been shown in the plot of RH values
against the concentration of SAs (Figure ). Representative diagram comprises % intensity
versus size (nm) plots of BSA in the presence and absence of 4-AC,
as shown in Figure S7. Also, the low polydispersity
index values found in this present study suggest that monodispersing
solutions have been formed due to complexation of BSA/HSA at all concentrations
with 4-AC (data not shown). The differences in the diameter in the
free state and those in presence of 4-AC are increased at a low concentration
of both BSA and HSA (at 9.9 × 10–4 mM for BSA
and 4.01 × 10–4 mM for HSA), respectively,
and the value is somewhat higher in the case of complex of HSA (RH = 14.06 nm) than that of BSA (RH = 6.8 nm). Initially. a small addition of BSA/HSA to
10 μM 4-AC significantly increases the hydrodynamic diameter
compared to their radii in their free state due to unfolding of native
SA structures influenced by the ligand. This influence was greater
in the case of HSA compared with BSA, manifested in RH values at a low concentration of proteins. However,
with the gradual augmentation of concentration of both BSA/HSA, the
hydrophobicity of the immediate medium of 4-AC increases, leading
to a decrease in the effective distance of 4-AC-Trp residue(s) (less
hydrodynamic diameter). This phenomenon supports the observation of
gradual increase of lifetime values as well as the increased fluorescence
quantum yield values of the ligand upon gradual addition of BSA/HSA.
After a particular concentration (for 0.005 mM BSA and for 0.002 mM
HSA), there is no significant change in the hydrodynamic diameter.
This is probably due to the occurrence of the dynamic equilibrium
between the bound and free 4-AC ligands, which is manifested in the
saturation of fluorescence intensity at a high concentration of BSA/HSA.
Conclusions
The present work demonstrates the interaction
of the ligand 4-AC
with some biomimicking systems, viz., α-CD, β-CD, and
γ-CD, and biomolecular systems, BSA and HSA, by steady-state
and time-resolved fluorescence studies and also steady-state and time-resolved
fluorescence anisotropy studies by monitoring the enhanced emission
of bound 4-AC at 298 K and molecular docking studies. Categorically,
these two kinds of systems reveal the following:1. 4-AC binds strongly with the respective
systems with
binding constants of the order of 105 and 106 M–1 for CDs and SAs, respectively, at a single
binding site.2. The quantum yield of
enhanced emission of 4-AC observed
around ∼452 nm in aqueous buffer (pH 7) is markedly enhanced
in the presence of CD molecules and BSA/HSA along with the hypochromic
shift of the ligand in presence of the proteins. The variation of
the quantum yield values is somewhat due to the polarity responsive
environment around 4-AC.3. The lifetime
values evidently follow the general
trend as in quantum yield for the SA–ligand complexes. For
the α-CD–4-AC complexes, the lower viscosity due to the
smaller cavity size of α-CD–4-AC produces almost unchanged
values of the lifetime for the encapsulated host–guest complexes,
thereby differentiating from that of the β-CD and γ-CD
complexes with 4-AC. This contention could be rationalized by the
emission study of 4-AC in the EG–water mixed solvent system
having different viscosities.4. The
variation in the emission maxima, the quantum
yield values, and the lifetime of the 4-AC molecule in different polar
protic and aprotic solvents are found to depend on the polarity as
well as hydrogen bonding ability of the solvents with the 4-AC molecule.
This governs to predict the nature of the environment of 4-AC in binding
with the CDs and the protein molecules.5. The rotational correlation time (θc) obtained
from the time-resolved anisotropy study in the complexes
of 4-AC–CDs and 4-AC–SAs
matches well with that calculated from the steady-state anisotropy
data. The significant enhancement of the 4-AC emission in both kinds
of the confined medium is thus ascribed to the motional restriction
of the probe induced by the binding sites of the host molecules.6. The H-bonding interactions between 4-AC
and CD molecules
obtained from the molecular docking studies are substantiated to visualize
the nature of the microenvironment around the ligand in all CD–4-AC
complexes. Also the change in the ASA value and polar contacts/H-bonding
distances obtained from molecular docking studies for SA–4-AC
complexes support the larger θc for 4-AC in the microenvironment
of HSA as compared to BSA.7. The change
in hydrodynamic diameter upon ligand binding
calculated from the DLS data helps to understand the changes in the
microenvironment in the core of SAs due to complexation of 4-AC with
SAs.Thus, these searching and finding
investigations by both experimental
and theoretical approaches for the biomimetic and biomolecular systems
having the altering micro–heterogeneous environments help us
to visualize the preliminary steps of finding the drug designing and
drug delivery study of the modern pharmaceutical and/or biophysical
research endeavor.
Experimental Section
Materials and Methods
Materials
All analytical grade reagents, chemicals,
and CDs (α-CD, β-CD, and γ-CD) and SAs (BSA and
HSA) were purchased from Sigma-Aldrich Chemicals Pvt. Ltd. All spectral
grade solvents such as DOX, DMSO, ACN, PhCN, i-PrOH,
EtOH, MeOH, and EG were dried by standard procedures. Aqueous phosphate
buffered solution of pH 7 was prepared in triple distilled water for
making the experimental solutions.
Instrumentation
Steady-State
Measurements at 298 K
UV–vis absorption
spectra at 298 K were performed using a Hitachi U-2910 spectrophotometer.
Steady-state fluorescence measurements at 298 K were carried out with
a stoppered cell of 1 cm path length using a Hitachi Model F-7000
spectrofluorimeter equipped with a 150-W xenon lamp. The excitation
and emission band passes in all measurements of emission of 4-AC on
excitation at 290 and 330 nm were considered as 10 and 5 nm, respectively.
Also, the fluorescence quantum yield was determined in each case by
comparing the corrected emission spectrum of the systems with those
of tryptophan (φD = 0.13) and quinine sulfate (φD = 0.54) in 0.1 N H2SO4, considering
the total area under the emission curve.[74]The steady-state anisotropy (r) was also
performed in a Hitachi Model F-7000 spectrofluorimeter with a manual
Glen Thompson polarizer and is defined by[74]where IVV and IVH are the emission intensities
collected with
the samples when the excitation polarizer was orientated vertically
and the emission polarizer was oriented vertically and horizontally,
respectively. The G factor is defined as the correction
factor of the instrument and was determined by keeping the horizontal
position with the excitation polarizer and the vertical and horizontal
positions with the emission polarizer, respectively.
Time-Resolved
Emission Studies at 298 K
Singlet-state
lifetime was measured by a Time Master fluorimeter from Photon Technology
International (PTI, USA) with a TCSPC set up (PTI, USA) using interchangeable
sub nanosecond pulsed LEDs and pico-diode lasers (Picoquant, Germany)
and a pulsed laser driver, that is, PDL-800-B (from Picoquant, Germany).
All acquisition modes and data analysis of the Time Master system
were controlled by the software Felix 32.[75] A pulsed LED PLS-290 (pulse width-600 ps) and a diode laser LDH-375
(pulse width-80 ps) with a repetition frequency of 10 MHz were used
for the excitation of 10 μM 4-AC with varying concentrations
of CDs and SAs. Instrument response function was measured at the respective
excitation wavelength, namely, 290 and 375 nm, using slits with a
band pass of 3 nm using Ludox as the scatterer. The decay analyses
were carried out by a nonlinear iterative fitting procedure based
on the Marquardt algorithm using the deconvolution technique, and
intensity decay curves were fitted as a sum of exponential terms.[2,3]where α represents
the pre-exponential factor to the time-resolved decay
of the component with a lifetime τ. The quality of fit has been assessed over the entire decay, including
the rising edge, and tested with a plot of weighted residuals and
other statistical parameters, for example, the reduced χ2 ratio and the Durbin–Watson parameters.[74] The amplitude-weighted average lifetime <τ>
was calculated using the equation.[2,3]Time-resolved anisotropy
decay [r(t)] measurements were also
carried out
in TCSPC from PTI, USA using a motorized Glen Thompson polarizer and
is defined aswhere I(t) terms
are defined as the intensity decay of emission of 4-AC with
excitation polarizer orientated vertically and the emission polarizer
oriented vertically and horizontally and G is the correction term
for the relative throughput of each polarization through the emission
optics. The entire data analysis was carried out with the software
Felix 32 which analyses the raw data IVV and IVH simultaneously by global multiexponential
program, and then the deconvolved curves (IDVV and IDVH) are used to construct r(t), and from the fitted curve, the rotational correlation time (θc) can be recovered.[75]
Docking
Studies
For 4-AC–CD Complexes
The three-dimensional
structure of the azo molecule has been prepared and optimized using
Avogadro Software.[76] The three-dimensional
structures of α, β, and γ-CD were extracted from
the following PDB files, respectively: 4FEM,[77] 1BFN,[78] and 5E70[79] followed by optimization using Avogadro software.The docking
study of azo with α-, β-, and γ-CD was carried out
using AutoDockVina[80] with the grid size
16 Å × 20 Å × 18 Å with the center at coordinate x = −22.274, y = −28.712,
and z = −18.375 for α-CD, 34 Å
× 32 Å × 34 Å with the center at coordinate x = −26.594, y = −29.781,
and z = −12.635 for β-CD, and 44 Å
× 37 Å × 26 Å with the center at coordinate x = 81.717, y = 76.619, and z = 60.879 for γ-CD. The structure corresponding to the most
negative ΔG (free energy) was selected and
analyzed using UCSF Chimera software.[81]
For 4-AC–SA Complexes
The crystal structures
of BSA (PDB ID: 4F5S) and HSA (PDB ID: 1AO6) were obtained from Protein Data Bank.[82] The three-dimensional ligand molecule was generated in Sybyl 6.92
(Tripos Inc., St. Louis, USA), and its energy-minimized conformations
were obtained using Tripos force field and Gasteiger–Hückel
charges with a gradient of 0.005 kcal/mol with 1000 iterations. The
protein structure was initially taken followed by removal of water
molecules from the pdb structure and addition of polar hydrogens to
it. For docking purpose, the whole protein was selected and FlexX
software, which is a part of the Sybyl suite, was used for docking
of the ligand to the SAs. Based on the free energy of binding (ΔG) of the protein–ligand complex, a series of solutions
were generated of various ranks with a particular score.[83] For both the proteins, the structure corresponding
to the minimum score was selected and used for further studies. In
order to visualize the docked conformations and evaluate the protein–ligand
interaction, UCSF Chimera software was used.[81]
ASA Calculations
The solvent exposure of the protein
residue was calculated by using NACCESS software.[84] In order to estimate the change in the solvent
ASA (ΔASA), the difference between the ASA of the free protein,
the free ligand, and the protein-bound ligand was calculated for the
entire protein and also individual residues using the following equationThe change in the ASA of the ith residue of BSA or HSA and jth atom
of the ligand is represented by eqs and 12, respectively.
DLS Measurement
DLS measurements were carried out on
a Nano ZS Zetasizer (Malvern, UK) with a He–Ne laser (λ
= 632.8 nm) at 90° scattering angle at 298.15 K. Different concentration
sets of BSA and HSA were incubated with 4-AC (10 μM) for 10
h. The samples were well sonicated for 20 min at low temperature and
were filtered through 0.22 and 0.02 mm Whatman syringe filters to
a quartz DLS cell of 1 cm path length. 1 mL of solution was taken
for each measurement. The measurement of each set of different concentrations
of BSA/HSA, both in the presence and absence of 4-AC, was performed
three times with an average of 20 measurement runs.
Authors: H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne Journal: Nucleic Acids Res Date: 2000-01-01 Impact factor: 16.971