| Literature DB >> 34056325 |
Abstract
Computational experiments on a novel crystal (Bharadwaj et al. Cryst. Growth Des. 2019, 19, 369-375) having a series of seven host-guest complexes (HGCs) where the host species belong to the family of a novel bispyrazole organic cryptand (BPOC) and their structural, stability, and the electronic feature analyses have been reported using the quantum chemical calculation approach. This report systematically unravels an inclusive theory-based experiment on the well-known guest solvents (S) like halocarbon solvents [CCl4, CHCl3/CHCl3' (two orientations), CH2Cl2 , C2H4Cl2 , C2H4Br2 , and C2HCl3 ] and a few model chlorofluorocarbons (CFCs) (CClF3 , CCl2F2 , and CCl3F) trapped inside the host (BPOC) cryptand, which are the crux in forming the structures of biological and supramolecular systems. Using the implicitly dispersion-corrected DFT (M06-2X/6-31G*) approach, the BPOC molecular cage and its host-guest capabilities were evaluated for the encapsulation of the above said halocarbon solvents as well as the CFC models. The encapsulated C2H4Br2 solvent inside the BPOC cage is found to be the most stable among all the HGCs; however, common in the solid phase, similar binary complexes have not been formerly examined in any gas/solvent-phase studies of the BPOC host species. Moreover, very interestingly, the stability pattern of the host-guest complexes enhances for the CFC models when the number of Cl atoms is increased. As the halogenated solvents through halogen and H-bonding are very decisive in understanding and controlling chemical reactions, the NCI-plots support the presence of the halogen bonding (C-Cl/Br···π) and H-bonding (C-H···π) interactions playing an imperative role in stabilizing the guests (solvents) inside the hydrophobic cavity. To get more insights, the HOMO-LUMO and MESP plots as well as natural population analyses have also been highlighted. This theoretical study portrays an inclusive information about the structural, stability, and electronic feature analyses of the host-guest assemblies consisting of the halogen and H-bonding interactions at the atomic level where the influences of such halocarbon solvents play crucial roles in comprehending and managing chemical reactions.Entities:
Year: 2021 PMID: 34056325 PMCID: PMC8154030 DOI: 10.1021/acsomega.1c01019
Source DB: PubMed Journal: ACS Omega ISSN: 2470-1343
Scheme 1Pictorial Representation of the Host (Organic Molecular Cage) and Guest (Solvents) Molecules as well as Host–Guest Complex
Comparison of Bond Distances between the C–H/Halogens(Cl/Br) and π-Framework of the Ring (in Å)
| crystal structure | DFT (PCM) | |||||
|---|---|---|---|---|---|---|
| bridgehead NN distance | Cl/Br···π | C–H···π | bridgehead NN distance | Cl/Br···π | C–H···π | |
| 21.722 | 3.780, 3.894 | 2.920, 3.073 | 21.694 | 3.493, 3.820 | 2.612 | |
| 21.765 | 3.172, 3.153 | 2.789 | 21.654 | 3.054, 3.099 | 2.537 | |
| 21.242 | 3.190, 3.209, 3.269 | - | 21.344 | 3.147, 3.149, 3.150 | - | |
| 21.231 | 3.217, 3.291, 3.324 | - | 21.447 | 2.943, 2.994, 3.047 | - | |
| 21.574 | 3.607, 3.733 | 2.557, 2.573, 3.113, 3.349 | 21.810 | 3.528, 3.535 | 2.352, 2.355 | |
| 20.806 | 3.479, 3.479 | 2.490, 2.490 | 19.791 | 3.334, 3.334 | 2.632, 2.633 | |
| 21.144 | 3.194, 3.194 | - | 21.269 | 3.064, 3.254 | 2.442 | |
Calculated Some Important Geometrical Parameters of the Fully Geometry Optimized Structures for Different Solvents inside the Molecular Cage and Solvents Alone at the M06-2X/6-31G* Level of Theory
| crystal | solvent in the cryptand (Exp, PCM) | free solvent |
|---|---|---|
| C–Cl (1.710, 1.779), C–H (0.970, 1.090), ∠HCH (107.8, 112.3), ∠ClCCl (113.1, 110.5), ∠HCCl (109.0, 108.0) | C–Cl (1.778), C–H (1.086), ∠HCH (111.6), ∠ClCCl (112.3), ∠HCCl (108.2) | |
| C–Cl (1.736, 1.752), C–H (0.979, 1.090), ∠ClCCl (110.8, 110.2), ∠HCCl (108.6, 108.7) | C–Cl (1.772), C–H (1.085), ∠ClCCl (110.9), ∠HCCl (108.0) | |
| C–Cl (1.741), C–H (1.202), ∠ClCCl(111.8), ∠HCCl (107.0,) | C–Cl (1.772), C–H (1.085), ∠ClCCl (110.9), ∠HCCl (108.0) | |
| C–Cl (1.745, 1.769), ∠ClCCl (108.7, 109.5) | C–Cl (1.775), ∠ClCCl (109.5) | |
| C–C (1.462, 1.508), C–H (0.970, 1.092), C–Cl (1.776, 1.745), ∠HCH (108.1, 109.8), ∠ClCC (110.2, 109.2), ∠ClCH (109.7107.4), τ ClCCCl (72.3, 69.9) | C–C (1.090), C–H (1.511), C–Cl (1.796), ∠HCH (109.6), ∠ClCC (112.1), ∠ClCH (107.0), τ ClCCCl (66.4) | |
| C–C (1.360, 1.509), C–H (0.970, 1.092), C–Br (1.930, 1.957), ∠HCH (107.1, 110.1), ∠BrCC (119.1, 111.7), ∠BrCH (107.6, 106.5), τ BrCCBr (50.7, 70.6) | C–C (1.510), C–H (1.089), C–Br (1.949), ∠HCH (110.3), ∠BrCC (111.5), ∠BrCH (106.2), τ BrCCBr (65.3) | |
| C=C (1.420, 1.332), C–H(1.070, 1.086), C–Cl [(1.674, 1.718)H, (1.660, 1.724) Cl-Trans, (1.650, 1.720)Cl-Cis], ∠ClCCl (93.4, 115.6), ∠ClCH (110.1, 116.1), τ ClCCCl (165.5, 177.7) | C=C (1.331), C–H (1.083), −Cl (1.718H, 1.728Cl-Trans, 1.718 Cl-Cis), ∠ClCCl (115.7), ∠ClCH (115.4), τ ClCCCl ( 180.0) |
Comparison of the Associated Bond Angles between C–H/C-Cl and π-Framework of the Ring (in °)
| crystal structure | DFT optimized (PCM) | |||
|---|---|---|---|---|
| C–Cl···π | C–H···π | C–Cl···π | C–H···π | |
| 127.6, 129.8 | 131.6, 137.5 | 138.8–122.4 | 121.5, 141.4 | |
| 154.5, 167.7 | 150.1 | 166.9–154.1 | 148.8 | |
| 151.6–161.1 | - | 155.0 | - | |
| 120.8–125.1 | - | 139.4–162.2 | - | |
| 135.8, 139.6 | 138.8, 149.9 | 135.6, 135.6 | 142.9, 142.9 | |
| 169.4 | 168.1 | 167.8 | 131.1 | |
| 140.4 | - | 131.5, 156.6 | 133.9 | |
Figure 1Cl···π and C–H···π interactions (bond distance and angles) in (a) the crystal structure and (b) DFT optimized (solvent phase) for CH.
Figure 2C–Cl···π and C–H···π interactions (bond distance and angles) in (a) the crystal structure and (b) DFT optimized (solvent phase) for CHCl.
Figure 3C–Cl···π interactions (bond distance and angles) in (a) the crystal structure and (b) DFT optimized (solvent phase) for CHCl (CHCl3 is disordered over two positions).
Figure 4C–Cl···π and C–H···π interactions (bond distance and angles) in (a) the crystal structure and (b) DFT optimized (solvent phase) for CCl (CCl4 is disordered over two positions).
Calculated Encapsulation Energies (EEs) and HOMO–LUMO Gaps of the Fully Geometry Optimized Structures for the Interaction Different Solvents and Molecular Cage at the M06-2X/6-31G* Level of Theorya
| halocarbon @BPOC | BE (kJ/mol) | HOMO (eV) | LUMO (eV) | dipole moment (S@BPOC) | dipole moment (BPOC) | dipole moment (S) | |
|---|---|---|---|---|---|---|---|
| –69.9 (−63.6) | –7.00 (−7.18) | –0.46 (−0.66) | 6.44 (6.52) | 1.31 (2.07) | 0.03 (0.01) | 1.87 (2.24) | |
| –73.2 (−68.6) | –6.99 (−7.12) | –0.48 (−0.63) | 6.51 (6.49) | 0.83 (1.20) | 0.03 (0.01) | 1.30 (1.52) | |
| –87.7 (−81.1) | –7.16 (−7.28) | –0.54 (0.68) | 6.62 (6.60) | 0.81 (1.08) | 0.03 (0.01) | 1.30 (1.52) | |
| –60.8 (−59.8) | –6.97 (−7.05) | –0.49 (−0.58) | 6.48 (6.47) | 0.34 (0.45) | 0.03 (0.01) | 0.00 (0.00) | |
| –75.8 (−67.4) | –6.96 (−7.15) | –0.44 (−0.65) | 6.52 (6.50) | 2.49 (3.76) | 0.03 (0.06) | 2.94 (3.71) | |
| –158.6 (−150.6) | –7.06 (−7.18) | –0.42 (−0.55) | 6.64 (6.63) | 0.19 (0.29) | 0.03 (0.23) | 2.73 (3.40) | |
| –60.9 (−57.4) | –7.13 (−7.23) | –0.51 (−0.63) | 6.62 (6.60) | 0.84 (1.18) | 0.03 (0.03) | 1.00 (1.18) |
Values given without and within parentheses are in the gas and solvent phases, respectively.
Figure 5General and approximately common MEP surface maps of all guest–host complexes and the molecular container alone.
Figure 63D isosurface (left) and 2D scatter (right) plots of CH, CHCl, CHCl, and CCl (from top to bottom).
Figure 7C–Cl···π and C–H···π interactions (bond distance and angles) in (a) the crystal structure and (b) DFT optimized (solvent phase) for C.
Figure 8C–Br···π and C–H···π interactions (bond distance and angles) in (a) the crystal structure and (b) DFT optimized (solvent phase) for C.
Figure 9C–Cl···π and C–H···π interactions (bond distance and angles) in (a) the crystal structure and (b) DFT optimized (solvent phase) for C (C is present over 2-fold axes and is therefore disordered).
Figure 103D isosurface (left) and 2D scatter (right) plots of C, C, and C (from top to bottom).
Figure 11C–Cl···π interactions (bond distance and angles) in DFT optimized (gas phase) for CClF.
Figure 13C–Cl···π interactions (bond distance and angles) in DFT optimized (gas phase) for CCl.
Figure 143D isosurface (left) and 2D scatter (right) plots of CCl, CCl, and CClF (from top to bottom).
Figure 12C–Cl···π interactions (bond distance and angles) in DFT optimized (gas phase) for CCl.