Yutao Sang1, Suryakant Mishra1, Francesco Tassinari1, Senthil Kumar Karuppannan1, Raanan Carmieli2, Ruijie D Teo3, Agostino Migliore3,4, David N Beratan3, Harry B Gray5, Israel Pecht6, Jonas Fransson7, David H Waldeck8, Ron Naaman1. 1. Department of Chemical and Biological Physics, Weizmann Institute, Rehovot 76100, Israel. 2. Department of Chemical Research Support, Weizmann Institute of Science, Rehovot 76100, Israel. 3. Department of Chemistry, Duke University, Durham, North Carolina 27708, United States. 4. Department of Chemical Sciences, University of Padova, Via Marzolo 1, Padova 35122, Italy. 5. Beckman Institute, California Institute of Technology, Pasadena, California 91125, United States. 6. Department of Immunology, Weizmann Institute, Rehovot 76100, Israel. 7. Department of Physics and Astronomy, Uppsala University, Uppsala 752 36, Sweden. 8. Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, United States.
Abstract
The steady-state charge and spin transfer yields were measured for three different Ru-modified azurin derivatives in protein films on silver electrodes. While the charge-transfer yields exhibit weak temperature dependences, consistent with operation of a near activation-less mechanism, the spin selectivity of the electron transfer improves as temperature increases. This enhancement of spin selectivity with temperature is explained by a vibrationally induced spin exchange interaction between the Cu(II) and its chiral ligands. These results indicate that distinct mechanisms control charge and spin transfer within proteins. As with electron charge transfer, proteins deliver polarized electron spins with a yield that depends on the protein's structure. This finding suggests a new role for protein structure in biochemical redox processes.
The steady-state charge and spin transfer yields were measured for three different Ru-modified azurin derivatives in protein films on silver electrodes. While the charge-transfer yields exhibit weak temperature dependences, consistent with operation of a near activation-less mechanism, the spin selectivity of the electron transfer improves as temperature increases. This enhancement of spin selectivity with temperature is explained by a vibrationally induced spin exchange interaction between the Cu(II) and its chiral ligands. These results indicate that distinct mechanisms control charge and spin transfer within proteins. As with electron charge transfer, proteins deliver polarized electron spins with a yield that depends on the protein's structure. This finding suggests a new role for protein structure in biochemical redox processes.
Theoretical and experimental
studies have taught us how structure,
energetics, and dynamics impact biological electron transfer kinetics.
For example, studies of metal-labeled proteins[1,2] revealed
how their polypeptide matrices direct charge transfer over large distances
by thermally activated tunneling.[3−13] Limited attention has however been paid to the spin of the electron
as it transits within a protein.Recent studies documented spin-selective
electron transfer and
transport through chiral (bio)molecules.[14,15] Electron transmission through chiral molecules is found to depend
on the electron’s spin orientation (the chiral-induced spin
selectivity or CISS effect).[16] Spin-selective
electron transport has been measured via peptides and proteins,[17] in multiheme cytochromes,[18] and via membranes containing bacteriorhodopsin.[19] Here, we show that spin-selective intramolecular
electron transfer via the blue copper protein azurin labeled by Ru(II)(bpy)2(im) (bpy = 2,2′-bipyridine, im = imidazole) on specific
surface histidine residues is thermally activated. The employed azurins
were modified in a way that its electron transfer is activationless,
which enabled to distinguish between the temperature dependence of
spin filtering and that of the charge transfer.Ru-modified
proteins have proven most valuable for investigating
protein-mediated electron transfer mechanisms,[3,4,20−23] yet earlier studies have not
addressed the spin filtering that may accompany electron transfer.
The methods described here allow the study of both charge and spin
transfer via the Ru-modified azurins. Native and mutated surface histidine
residues of azurin have been derivatized with Ru-bipyridyl complexes,
enabling the initiation of photoinduced electron transfer between
the surface Ru complex and the protein’s Cu(II) site. The known
surface histidine positions provided variation of the copper to ruthenium
separation distance, coupling pathways, and charge-transfer kinetics.
Signatures of the photoinduced electron transfer and spin polarization
were measured as a function of temperature for three azurin derivatives
(His83, 124, and 107)[6] adsorbed on a silver
substrate, which forms the top contact in a magnetic tunnel junction
(MTJ) device and allows measurement of both charge and spin transfer.[24]An illustration of the MTJ device is shown
in Figure A. Photoexcitation
of the Ru-bipyridyl
species in the modified azurin film energizes intramolecular electron
transfer (between Ru and Cu) and delivers charge to the Ag electrode
in a second step. Under steady-state illumination, the photovoltage
produced on the Ag electrode reports on the quantum yield of charge
transfer, while the steady-state excess charge produced as a function
of the MTJ magnetization allows measurement of the electron spin population
on the Ag (the spin polarization). The experimental results show distinctly
different temperature dependences of the photoinduced charge-transfer
yield and the spin polarization (Figure C,D). Corresponding studies on electron transport
through native azurin in molecular junction devices were performed
and show that the spin polarization of the electron current increases
as the temperature increases. Thus, while the charge transfer depends
only weakly on temperature, spin filtering is thermally activated.
In addition to the study of the photoinitiated electron transfer within
the protein, two complementary measurements were performed. In the
first, the spin-dependent polarizability of the protein was confirmed
by Hall device measurements (see the Supporting Information and refs (18) and (25)). In the second, spin-dependent conduction was measured through
a film of azurin in a spin valve configuration as a function of temperature.[26−28]
Figure 1
Measurements
with MTJ device. (A) Scheme for measuring the temperature-dependent
electron and spin transfer from dry films of Ru-modified azurin to
a silver layer. Energy-level scheme of the device for measuring photoinduced
charge transfer and the adsorbed molecules containing donor (Ru(II)*)
and acceptor (Cu(II)) groups, adjacent to the silver film (gray).
A laser of intensity I is used to excite the donor. EF is the Fermi level of the device without a
magnetic field applied to the nickel. Upon photoexcitation, an electron
is excited on the Ru ion at a rate of kII, and an electron from the silver is transferred to the hole left
on the Ru. The excited electron is transferred to the Cu (II) ion
(kDA) and from there back to the silver
substrate (kAAg). The arrows indicate
the electron transfer processes giving rise to a photovoltage. (B)
Time profiles of the photovoltage between the silver and nickel layers
exposed to magnetic fields pointing toward or away from the protein
layer (black arrows); measurements are at 290 K with monolayers of
His83 (black), His124 (blue), and His107 (red). (C) Temperature dependence
of the average (spin-independent) photovoltage as a function of temperature.
(D) Percentage spin polarization as a function of temperature.
Measurements
with MTJ device. (A) Scheme for measuring the temperature-dependent
electron and spin transfer from dry films of Ru-modified azurin to
a silver layer. Energy-level scheme of the device for measuring photoinduced
charge transfer and the adsorbed molecules containing donor (Ru(II)*)
and acceptor (Cu(II)) groups, adjacent to the silver film (gray).
A laser of intensity I is used to excite the donor. EF is the Fermi level of the device without a
magnetic field applied to the nickel. Upon photoexcitation, an electron
is excited on the Ru ion at a rate of kII, and an electron from the silver is transferred to the hole left
on the Ru. The excited electron is transferred to the Cu (II) ion
(kDA) and from there back to the silver
substrate (kAAg). The arrows indicate
the electron transfer processes giving rise to a photovoltage. (B)
Time profiles of the photovoltage between the silver and nickel layers
exposed to magnetic fields pointing toward or away from the protein
layer (black arrows); measurements are at 290 K with monolayers of
His83 (black), His124 (blue), and His107 (red). (C) Temperature dependence
of the average (spin-independent) photovoltage as a function of temperature.
(D) Percentage spin polarization as a function of temperature.It is proposed that the temperature-activated spin
filtering arises
from anharmonic vibrations at the copper ion coordination site, which
induce a spin-dependent exchange interaction that increases with increasing
temperature. Previous EPR studies are consistent with this proposed
hypothesis. The long spin polarization lifetime (typically microseconds)
suggests that biomolecules could use spin filtering to direct redox
processes that are driven by electron transfer.
Methods
Protein
Pseudomonas aeruginosa azurin
(native His83) and two mutants where histidine have been introduced
by single-site mutations at positions 107 and 124 were labeled by
Ru(II)(bpy)2(im) (bpy = 2,2′-bipyridine, im = imidazole).
Preparation and purification of all three labeled azurins were as
described previously.[6,23] Successful labeling was confirmed
by UV–vis spectroscopy and mass spectrometry.
Preparation
of MTJ Device
Using the MTJ device described
in Figure A, we studied
electron and spin transfer via three different azurin Ru-derivatives
as a function of temperature, from 290 to 150 K, and as a function
of the magnetic field direction, by applying fields of +0.4 and −0.4
T. All proteins were bound to the silver film through the thiol of
a disulfide bond (1,6-hexanedithiol) connecting Cys 3 and Cys 26 to
the Ag.Protein binding to the surface was achieved by exposing
the device surface to a phosphate (0.4 M, pH 7.2) buffer solution
containing azurin (100 μM) for 2 h; adsorption was verified
by XPS (Figure S1) and UV–vis absorption
spectroscopy (Figure S2). Following binding,
the sample was washed twice with 0.4 M phosphate buffer and then washed
with water for 5 s. Having the protein bound to the Ag via Cys3/Cys
26 made the donor (Ru) closer to the surface than the acceptor (Cu).
The samples were illuminated by a 532 nm laser (with an intensity
of 0.4 mW/cm2), and a positive photovoltage was measured
indicating that a net transfer of electrons occurs from the electrode
to the protein, i.e., from the Ag film to the photogenerated RuIII site. No (steady-state charging) signal was detected for
the native azurin, confirming the role of the Ru ion in the photosignal.
Magnetoresistance Measurements
For the charge and spin
transport measurements we apply a four-contact configuration shown
in Figure , as already
described in ref (26). Monolayer preparation followed the same procedure as for the Hall
devices (see the Supporting Information, and Experimental Details). All the electrical
measurement was carried out within the SQUID-MPMS3 made by Quantum
Design. A magnetic field of 0.8 T was applied out-of-plane of the
device, and the resistance was measured by a standard 4-probe method.
A constant current of 1 mA was applied, and the voltage was measured
across the junction using a Keithley SMU model 2400 as a current source
and a Keithley nanovoltmeter model 2182A for the voltage measurement.
The magneto-resistance (MR) values produced as a function of temperature
were calculated by MR(T) = , where RM(T) and R0(T) are the resistances measured at
magnetic field M and zero, respectively.
Figure 2
Magnetoresistance measurements
of wild-type, native azurin. (A)
Schematic illustration of the four-contact device that was used for
measuring the temperature-dependent magnetoresistance signal from
wild-type, native azurin which is located between gold and ferromagnetic
electrodes. (B) Magnetoresistance (MR), reported as a percentage,
for a number of discrete fields in the range of −0.8 to 0.8
T and at five different temperatures. (C) Plot of the difference in
the magnetoresistance taken at the two extreme fields, ΔMR =
MR–0.8T – MR0.8T, as a function
of temperature.
Magnetoresistance measurements
of wild-type, native azurin. (A)
Schematic illustration of the four-contact device that was used for
measuring the temperature-dependent magnetoresistance signal from
wild-type, native azurin which is located between gold and ferromagnetic
electrodes. (B) Magnetoresistance (MR), reported as a percentage,
for a number of discrete fields in the range of −0.8 to 0.8
T and at five different temperatures. (C) Plot of the difference in
the magnetoresistance taken at the two extreme fields, ΔMR =
MR–0.8T – MR0.8T, as a function
of temperature.
Theoretical Simulations
of Electronic Coupling in His83 Ru-Modified
Azurin
The electronic structure of the Cu(II) active site
was obtained from density functional theory (DFT) calculations at
the PBE0/6-31g* level of computational accuracy, using the NWChem
program.[29] This was followed by molecular
dynamics (MD) simulations using the NAMD software package[30] with the AMBER ff14SB force field,[31] except for the Cu and Ru redox sites, for which
the force field parameters were taken from refs (32) and (33), respectively. The TIP3P
model[34] was used to describe the water
(further details on the MD simulations are provided in the Supporting Information). The simplifying choice
of carrying out MD simulations of the solvated protein is supported
by previous studies showing very similar donor-to-acceptor electron
transfer rates for azurin molecules in crystals and in solution.[4,7] The dynamics of the system was simulated for the Ru(II)/Cu(II) charge
state, and the MD snapshots were used to study the electron tunneling
pathways from the photoexcited Ru center to the Cu center through
the Pathway 1.2 plugin.[35] Since the local
electronic excitation at the Ru center is much faster than the nuclear
motion and starts from a nuclear conformation corresponding to the
ground electronic state of Ru(II), the MD simulations were performed
using force field parameters that are appropriate to describe the
nuclear dynamics while Ru(II) is in its ground electronic state.
Results and Discussion
Experimental Results
Photoinduced Charge and
Spin Transfer
Figure A shows the structure of the
MTJ device that measures the photoinduced charge-transfer yields and
spin polarization as a function of temperature. The detailed structure
of the device is presented in the Supporting Information and in ref (24).
The experiment measures the photovoltage generated on the device’s
top electrode (Ag) as the magnetization of the lower Ni electrode
is varied. Because charge tunneling from the Ag to the magnetized
Ni layer is spin-dependent, the photovoltage difference that is generated
for the two different Ni magnetization directions (parallel and antiparallel
to the surface normal), reports on the Ag electrode’s spin
population, which can be ascribed to the spin-selective electron transfer
from Az (vide infra). The sum of the parallel and
antiparallel photovoltage is proportional to the total unpolarized
charge-transfer yield. An external magnetic field (0.4 T) is applied
normal to the Ag surface, and the voltage difference between the two
metal layers is measured under continuous 532 nm laser illumination.We first consider the case without the magnetic field. Photoexcitation
of the Ru chromophore at 532 nm produces a Ru(III)/Cu(I) charge-separated
state. An electron from the Ag surface can then be transferred to
the hole on the oxidized donor Ru(III) species. Charge recombination
from Cu(I) to the metal substrate regenerates the initial state. Under
irradiation, steady-state populations of Ru(III) and Cu(I) are created
and lead to a photoinduced charging of the Ag electrode. The photovoltage
generated between the silver and nickel films is sensitive to the
rates of Ru(III)/Cu(I) production, Ru(III) reduction by the Ag, and
Cu(II) reduction by electron transfer from the Ag film. Parasitic
relaxation processes (such as energy transfer from the Ru(II)excited
state to the Ag layer) will reduce the overall yield of charge transferred
to the silver substrate. Because of uncertainties in these rates and
in the protein surface coverage, our analysis focuses on the temperature
dependence of the photovoltage (i.e., the change of the photovoltage
with temperature rather than its absolute magnitude).In the
presence of an applied magnetic field, the photovoltage
that is measured across the tunnel junction depends on the relative
spin population between the electrons of the Ag electrode and those
of the Ni electrode. Consider, for example, the case where the Ni
is magnetized so that its electron spins are aligned antiparallel
with the excess electron spins on the silver electrode (Figure A(i)). In this case, the electrons
can tunnel more readily through the aluminum oxide, and the voltage
that is measured will be lower than that in the case where the Ni
is magnetized in the opposite direction (Figure A(ii)). Thus, a photovoltage change with
the direction of the applied magnetic field indicates a difference
in the spin population of electrons on the Ag layer. The data in Figure B show that the photovoltage
indeed changes with the magnetic field direction. Thus, the photogenerated
charge carriers on the Ag layer must be spin-polarized. If the charge-transfer
rate constant kDA is spin-dependent (Figure A), then the hole
population created on the Ru sites is spin-polarized, and the electron
population transferred from the silver electrode to the hole sites
should also be spin-polarized. If the electron transfer from Cu(I)
to Ag is spin-polarized, then it can also influence the relative spin
populations. The experiment does not distinguish between these two
possibilities. The amount of total charge transferred as a function
of temperature is indicated in Figure C, while the difference in the spin populations generated
under the two magnetic fields is reported as a spin polarization in Figure D.Figure B shows
a time profile of the photoinduced spin-dependent charge transport
signals measured on the three different Ru-azurin derivatives at room
temperature. The photovoltage magnitude changes upon reversing the
direction of the magnetic field from parallel (V↑) to antiparallel (V↓) with respect to the surface normal (see schematic in panel A).
These data provide the relative charge-transfer yield, V↑↓ = (V↑ + V↓)/2, and the resultant spin
polarization, P = (V↑ − V↓)/V↑↓. It is difficult to quantitatively compare
the charge-transfer yield between the three different protein assemblies
because the surface coverage of the bound proteins varies up to 20%,
(as judged by XPS (Figure S1) and UV–vis
absorption spectroscopy (Figure S2)). Nevertheless,
the ratios of photovoltage magnitudes observed for the different derivatives
at 290 K are significant, 4.7:3.7:1.2 (His107/His83/His124), as shown
in Table . This trend
in charge-transfer efficiency is different from that of the experimentally
measured intramolecular electron transfer rates, which is kDA(His83) > kDA(His124)
> kDA(His107) (Table ).[3] This difference
likely arises from competition between the intramolecular electron
transfer rate kDA and the quenching of
the Ru(II) excited state by energy and electron transfer to the Ag
electrode.[36]
Table 1
Observed
Spin Polarization, Photovoltage,
and Intramolecular Electron Transfer Rate Constants, in Relation to
the Ru-to-Cu Distance of the Three Mutants
property
His83
His107
His124
Ru-to-Cu distances (nm)
1.7
2.58
2.05
His-to-Cys3/Cys26
distance (nm)
2.03
2.07
1.81
Cu-to-Cys3/Cys26 distance (nm)
2.6
2.6
2.6
spin polarization, P (%)
20
12
9
photovoltage, V↑↓ (μV)
3.7
4.7
1.2
intramolecular
rate, kDA (s–1)
1 × 106
2.4 × 102
2.2 × 104
All the azurins are bound to the Ag by thiol linkage(s)
of their
Cys3 or Cys26 residues. Hence, the Cu is remote from the Ag electrode,
and the His124 derivative has the Ru significantly closer to the Ag
surface than do the His83 or His107 derivatives. Control experiments
on wild-type azurin (without Ru modification) show a very weak residual
photovoltage (∼20 nV) and no magnetic field dependence (Figure S3).The temperature dependences
of the charge-transfer yield and the
spin polarization observed for the three azurin derivatives are shown
in Figure C,D. The
average photovoltage was divided by the resistance of the AlO layer which was determined at each temperature.
The resulting quantity has the dimensions of a current and is assumed
to be proportional to the steady-state charge-transfer yield. The
data indicate that the yields change by less than a factor of 2 over
a 150° temperature range, and this is consistent with earlier
studies that found the photoinduced electron-transfer kinetics to
be nearly activationless.[3]Figure D shows the spin polarization P versus temperature. The spin polarization follows a different
trend than the charge-transfer yields, namely P(His83)
> P(His107) > P(His124), at
290
K. P decreases to zero as the temperature is lowered.
The temperature-dependent spin polarization was corrected for phonon
quenching (see the Supporting Information for details), based on earlier studies performed with the same device
structure for adsorbed DNA.[24]The
temperature dependences of the charge-transfer yield and spin
polarization are significantly different. The charge-transfer yield
is reduced by 40% on cooling the His83 derivative from 290 to 250
K, with little change on further cooling to 150 K. This finding is
consistent with the weak temperature dependence reported for the intramolecular
photoinduced charge transfer in the His83 protein below 220 K.[36] In contrast, the spin polarization for electron
transfer in the His83 derivative decreases monotonically from ∼20%
at 290 K, to 3% at 200 K, and 0% at 150 K. The two mutants show similar
behavior between the temperature dependences of the charge-transfer
yield and the spin polarization. Hence, the photoinduced charge-transfer
yields are weakly temperature-dependent, but their spin polarizations
are strongly suppressed upon lowering the temperature.
Spin-Filtering
by Azurin
In order to contrast the spin
polarization that is found for the photoinduced electron transfer
with the intrinsic spin filtering by azurin in the dark, magnetoresistance
measurements for films comprising native wild-type azurin (unmodified
by Ru(II) bipyridyl) and its temperature dependence were studied in
a junction device without illumination. Figure A illustrates the four-point probe design
that was used to measure the resistance through the junction, and
details on the structure are provided in ref (26). A constant tunnelling
current of 1 mA was passed from the bottom of an Au electrode through
the protein and MgO films to the top Ni/Au electrode. The voltage
drop through the film was monitored with the other two electrode contacts.
By changing the external magnetic field that was oriented along the
direction of the current flow, the magnetic field dependence of the
resistance (the magnetoresistance) of the device was measured. Figure C shows the magnetoresistance
(MR) as a function of the applied magnetic field (H) at five different temperatures, where MR (%) is defined asR(H) is
the resistance at field strength H and R(0) is the resistance at zero field.Figure B shows that the MR signal has an antisymmetric
shape versus field that is typical of CISS-based devices.[26−28,37] The asymmetric shape of the MR
curves, results from the electrons being spin-polarized by the chiral
protein and the spin filtering by the Ni layer, which depends on the
magnetic field strength and direction. The combination of the two
filters (the protein and the Ni), and their different field dependences
gives rise to the antisymmetric shape for magnetoresistance curves
(Figure B). The low
MR values are a result of the protein layer having many pinholes that
allow current leakage. This current is not spin-polarized and therefore
creates a large magnetic independent current on top of which there
is a smaller magnetic-dependent current that passes through the protein.Figure C shows
the change in the MR signal amplitude as a function of temperature
(for 0.8 and −0.8 T fields): the magnitude of the MR drops
by almost a factor of 2 on cooling from 300 to 4 K. The decrease of
MR as the temperature is reduced, shown in Figure C, is much weaker than that found for the
spin polarization reported in Figure D. It is important to appreciate that while the data
in Figures D and 2 each indicate the spin filtering property of the
protein, the paths of the electrons are different for the two cases.
In the case of Figure D, the Cu2+ ions are necessarily involved in the photoinduced
electron transfer process, while in the case of Figure the electrons flow between two electrodes
and only part of them are affected by the copper ion. Analyses of
conductance data, which compare apo- and Cu-azurin films, show that
the transport mechanism through the protein films involves the Cu
(II) species;[38,39] however, other current paths
can also contribute. The difference in the spincurrent pathways in
the two experiments is reflected in the activation energies that are
obtained from data presented in Figures D and 2C, which are
about 40 and 13 meV, respectively. Thus, the photoinduced electron
transfer pathway accessed in the Ru-modified azurins, which necessarily
involves the Cu(II) ion, shows a stronger temperature dependence of
the spin filtering than does that of native azurin in the dark.
Spin Polarization Accompanies Charge Polarization
Previous
studies have shown that the CISS effect correlates with the optical
activity of the system through which the electron is transferred and
both are related to the anisotropic polarizability of the molecule.[16] To measure the spin polarization that accompanies
charge polarization, we adsorbed the protein on a Hall device (Figures S4 and S5), and the device was put inside
an electrolyte solution. A gate electrode was placed on top, electrically
insulated from the solution. Upon applying pulses of electric potential
between the gate and the device, a Hall potential was measured as
shown in Figure S5B. The Hall potential
increases linearly with the applied gate voltage, and its sign depends
on the sign of the applied field (Figure S5C). The applied gate voltage drives charge reorganization in the protein.
Because the charge reorganization is accompanied by spin polarization,
it generates a magnetization and a Hall voltage in the device.[18] This additional test confirms the spin-dependent
charge reorganization in azurin.
Theoretical Models for
Spin-Polarized Electron Transfer
Two possible mechanisms
were explored in order to rationalize the
observed spin-polarized electron transfer and its temperature dependence.
The first was based on changes in employed tunneling pathways as a
function of temperature, and the second was based on vibronically
induced spin polarization.
Temperature-Dependent Tunneling Pathways
If the dominant
electron tunneling pathways change as a function of temperature, then
it is possible that a low spin polarization pathway active at low
temperature could swap with a high spin polarization pathway operating
at elevated temperature. To examine this possibility, the case of
Ru-His83 azurin, which exhibits the highest spin polarization, was
explored by the electron tunneling pathway analysis[40−43] using molecular dynamics which
sampled protein conformations at 290 and 250 K (see Figures S6 and S7 and the Supporting Information for details). Since the experiments show similar results for charge
transfer via the His83 protein at 250 K and lower temperatures, the
analysis of the structure–charge-transfer relationship at 250
K, compared to that at 290 K, may also apply to lower temperatures.
We first identified the strongest Ru-to-Cu electron tunneling pathway
in His83 azurin for each selected MD snapshot and computed the occurrences
of the strongest tunneling pathways in the MD sampled snapshots at
250 and 290 K (Table S1, Figure ).
Figure 3
Dominant coupling pathways
for His83. (A–D) Examples of
the four electron tunneling pathways, which are identified in detail
in Table S1, for the His83 protein at 290
K are shown: (A) pathway 1, (B) pathway 2, (C) pathway 3, and (D)
pathway 4. The renderings were generated using VMD.[45]
Dominant coupling pathways
for His83. (A–D) Examples of
the four electron tunneling pathways, which are identified in detail
in Table S1, for the His83 protein at 290
K are shown: (A) pathway 1, (B) pathway 2, (C) pathway 3, and (D)
pathway 4. The renderings were generated using VMD.[45]The two strongest electron tunneling
pathways that occur with the
highest frequencies were unchanged in the structure at 290 and 250
K (pathways 1 and 2 in Table S1). However,
their overall occurrence frequency was larger at the lower temperature.
That is, these are the two strongest pathways in ∼61 and 80%
of the MD snapshots at 290 and 250 K, respectively. At 290 K, we found
a more frequent occurrence of two tunneling pathways through Asn47
that are assisted by an internal water molecule (similar to mediation
found in other proteins)[44] and proceed
from Ru to Cu following an almost straight line (Figure C), corresponding to a minimal
donor-to-acceptor distance and relatively large donor–acceptor
coupling. Although the relative contributions of these pathways changed
somewhat with temperature (from 290 to 250 K), their relatively small
overall contribution, as compared to those of pathways 1 and 2, make
them unlikely to contribute much to a change in the observed spin
polarization.We found a slightly shorter Ru–Cu average
distance appearing
at the higher temperature (Table S2), which
correlated with a larger occurrence probability of the direct pathways
3 and 4. In fact, averaging the Ru–Cu distance over the snapshots
for which pathway 2 (i.e., the most meandering among the stronger
tunneling pathways shown in Figure ) contributed most strongly to the coupling, the Ru–Cu
distances at 290 and 250 K differed by less than 0.1 Å, while
the distance difference increased to about 0.4 Å when the averages
were taken over the MD snapshots where pathways 3 and 4 dominate (Table S2). Comparing the protein system at two
temperatures, we see that the slight compression, enabled by the enhanced
protein flexibility at higher temperature, allows a more frequent
occurrence of efficient tunneling pathways along the donor–acceptor
direction, partly involving internal water molecules.On average,
we found that Cu(II) is slightly out of the equatorial
plane (defined by the two His imidazolyl ligands and the Cys thiolate)
on the side of the Met ligand based on the MD sampled structures.
The average Cu(II) distance from the equatorial ligand plane is larger
at 250 K (0.045 Å) than at 290 K (0.037 Å). At 250 K, however,
the methionine position moved, so the coordination bond between Cu
and the Met 121 sulfur is more extended than that at 290 K (0.35 vs
0.36 nm; see Table S2 and Figure S8). This stretching may correlate with the increased
occurrence of the strongest tunneling pathways through Cys 112 (Table S3) and the adjacent Phe 111.The
reduced average Cu–Ru distance and the related larger
contribution from more direct tunneling pathways produced a stronger
electronic coupling between Cu and Ru at 290 K than that at 250 K
for the His83 derivative, in agreement with the data in Figure C. The ratio between the electron
transfer rates at the two temperatures (as determined by the ratio
of the mean-square electron tunneling pathway decay products, Table S4) was within the error bars of Figure C. A closer agreement
to the experiments is achieved by considering a kinetic model of the
protein-electrode system that includes the effects of the electron
transfer from Cu(I) to the Ag film. In fact, through a more detailed
modeling (see the Supporting Information and Tables S5 and S6), we found that
the probabilities that charge accumulation on Ag (which is proportional
to the measured voltage in Figure C) at 290 and 250 K is in the ratio 1.8, in good agreement
with the experimental results (see the data points for His83 in Figure C).MD simulations
and pathway analysis for His83-modified azurin indicate
that gross changes in the electronic coupling pathways are not responsible
for the strongly temperature-dependent spin polarization. The molecular
dynamics and DFT analysis indicate that the average structure of the
protein has the Cu(II) ion out of plane. This finding is consistent
with the crystal structure and Raman data[46] near room temperature. The increase in the Cu to Met distance on
cooling from 290 to 250 K does not affect the charge transfer as the
dominant coupling pathways proceed through the copper’s cysteine
ligand.
Vibronically Activated Spin Polarization
The coupling
of the Cu(II) coordination site to protein vibrations has been observed
before by electron paramagnetic resonance (EPR) measurements.[47,48] The dependence of the EPR spectra on temperature indicate a more
isotropic g-tensor as temperature increases. It was
concluded that at room temperature the spectral changes are due to
vibronic coupling of Cu(II) and the methionine ligand (i.e., vibrational
distortions along the low frequency (177 cm–1) Cu–Met
coordinate mixes excited states of the Cu(II) d electrons with the
ground state).[28,29,49] At low temperature, this vibronic coupling is reduced significantly.We apply here a model that describes vibrational effects on chiral-induced
spin selectivity.[50] To simplify, we consider
a model that assumes electron transport through a molecular junction
located between two electrodes, and we approximate the molecule by
a copper ion located between two anharmonic chiral oscillators. Figure A,B shows a schematic
illustration of this simplified model system. This model is intended
to account for the vibronic coupling between the Cu(II) ion and its
coordination sphere of amino acid residues of the azurin’s
peptide chain. The electron-vibrational coupling leads to an indirect
exchange between the Cu(II) and its ligand shell, which manifests
as an effective magnetic field Bvib acting
on the Cu(II). The vibronic coordinate which couples the Cu(II) to
the ligand sphere is modeled as anharmonic, and this feature is represented
in Figure by the
asymmetric (Morse-like) potential energy curve.
Figure 4
Vibronically activated
spin polarization model. (A, B) Scheme of
the Cu(II) ligand complex model. Here two chiral molecules are interacting
with the Cu(II) ion which is located in anharmonic potential. The
chiral molecules serve as a bridge for electron conduction between
a ferromagnetic and normal metallic lead (the blue and light gray
squares, respectively). (A) Diagram representing low-temperature conditions
under which the Cu(II) is located near the bottom of the potential
and its surrounding is isotropic. (B) Diagram representing the high-temperature
situation, in which the Cu(II) is located (on average) away from the
harmonic part of the potential and its environment is anisotropic.
(C) Vibrationally induced magnetic field, Bvib, as a function of temperature. (D) Ionic spin moment (right axis)
for external field B = 0.35 T (red) and B = −0.35 T (blue), and chiral-induced spin polarization, P (left axis), as a function of temperature.
Vibronically activated
spin polarization model. (A, B) Scheme of
the Cu(II) ligand complex model. Here two chiral molecules are interacting
with the Cu(II) ion which is located in anharmonic potential. The
chiral molecules serve as a bridge for electron conduction between
a ferromagnetic and normal metallic lead (the blue and light gray
squares, respectively). (A) Diagram representing low-temperature conditions
under which the Cu(II) is located near the bottom of the potential
and its surrounding is isotropic. (B) Diagram representing the high-temperature
situation, in which the Cu(II) is located (on average) away from the
harmonic part of the potential and its environment is anisotropic.
(C) Vibrationally induced magnetic field, Bvib, as a function of temperature. (D) Ionic spin moment (right axis)
for external field B = 0.35 T (red) and B = −0.35 T (blue), and chiral-induced spin polarization, P (left axis), as a function of temperature.Figure A,B
shows
the diagrams for both low and high temperatures. The copper–ligand
vibrational motion is more harmonic at lower temperatures than at
elevated ones. As the Cu(I/II)–ligand vibration(s) proceeds,
it generates charge displacements in the chiral ligand’s electron
cloud, and these are accompanied by partial spin polarization of the
electron cloud.[51] Because the amplitude
of the motion is small at low temperature and is nearly harmonic,
the local fluctuating Bvib field is small.
At higher temperatures (Figure B), larger displacements occur along the vibrational coordinate,
and they access more anharmonic regions of the vibrational coordinate
between the copper and its chiral ligands, giving rise to a net local
magnetic polarization.[51] The temperature
dependence of azurin’s EPR spectrum has been measured (see
refs (47−49)) and supports this model. While
the g⊥ component of the g-tensor does not change significantly with temperature,
its g∥ component changes significantly
above 50 K, with an activation energy of about 160 cm–1. The vibronically driven exchange coupling along the g∥ direction generates a change in the magnetic
moment with temperature that spin polarizes the copper–ligand
environment, increasing the root-mean-square magnetic moment of the
copper ion (see eqs S4b and S5).The temperature dependence of the Cu(II) site’s magnetic
moment (spin polarization) can explain the temperature dependence
of the observed protein’s spin filtering. At low temperature,
the electron transmission through Cu(II) is spin independent and Bvib is small. Upon increasing the temperature, Bvib increases, and the copper’s spin polarization
increases, becoming oriented in the protein’s molecular frame.
Hence, the transmission of electrons will depend on their spin direction
relative to that of the Cu’s spin polarization, making the
electron transport spin-selective. Because the electron spin polarization
on the Cu(II) increases with temperature, the spin filtering of the
incident electron flux through the molecular junction is higher.On the basis of the model described above, we simulated the charge
current that flows through the Cu(II) coordination sphere between
5 and 400 K. The parameters used in the simulation are given in the Supporting Information. The plots in Figures C,4D show the induced effective magnetic field, Bvib, the ionic spin moment, and chiral induced spin polarization,
computed as a function of temperature. Using the parameters reported
in the “Methods” section, Bvib grows 100-fold as the temperature increases
from 50 K to room temperature (Figure C), and it produces a significant spin moment (Figure D, right axis). The
charge current I flowing through the system can be
written aswhere I0 is the
electron flux that is not through the copper and represents the flux of electrons
through the copper. Figure D shows a plot of the chiral induced spin polarization, defined
as P = 100%·|⟨S⟩·/I0|. The value
of the spin polarization in this analysis is similar to the experimental
value.
Conclusions
Photoinduced electron
transfer reactions of Ru-modified azurins
are very weakly dependent on temperature, quite unlike the spin polarization
of electron transfer, which exhibits strong dependence. The weak dependence
of charge transfer on temperature is consistent with previously reported
photoinduced intramolecular electron transfer rates for these Ru-modified
azurins.[3] The earlier findings are in accord
with the above coupling pathway analysis for His83 azurin, which indicates
that the donor–acceptor squared coupling decreases by less
than 2-fold from 290 to 250 K. The weak temperature dependence of
the charge-transfer yields shown in Figure C for the azurin assemblies on Ag films suggests
that the activation free energies associated with carrier injection
to the electrodes is also small. In contrast, the spin polarization
response depends strongly on temperature.Spin polarization
has been measured previously in cytochrome c,[18] bacteriorhodopsin,[19] and photosystem
I.[52] While spin-dependent
transport was detected in those systems, temperature dependences were
difficult to extract because of strong temperature dependences of
the charge-transfer processes. Here we have the advantage of measuring
temperature-dependent spin polarization in Ru-azurins where the underlying
charge-transfer kinetics depend weakly on temperature. This approach
has allowed us to probe the temperature-dependent spin polarization
separately from the temperature dependence of charge-transfer reactions.
In so doing, as spin filtering is thermally activated, we infer that
it arises from vibronically activated electronic exchange interactions
at the copper coordination site(s).The model used here to describe
the temperature-dependent spin
polarization of azurin invokes vibrationally induced exchange interactions
between the chiral ligands of the coordination sphere and the copper
ion. As the temperature increases, the amplitude of the displacement
along the anharmonic metal–ligand coordinate grows, and the
copper ion interacts with one side of the coordination sphere more
than the other, which polarizes the copperspin. As the Cu(II)-to-ligand
distance decreases, the chiral ligand becomes both charge-polarized
and spin-polarized.[17] The unpaired electron
on Cu(II) interacts with spin-polarized electrons on the ligand via
spin-exchange. If the exchange interaction is antiferromagnetic, then
the electron(s) on Cu(II) align antiparallel to the spin polarization
of the ligand. As a result, electrons transfer from the copper site
more readily if the electron’s spin is oriented antiparallel
to that of the copper (Figure ).In conclusion, studies of charge and spin transfer
for Ru-modified
azurin films reveal very different temperature dependences, with the
charge transfer being essentially temperature-independent and the
spin transfer increasing with temperature (Eact is 10s of meV). Because the spin polarization increases
with temperature, it seems likely that spin-polarized electron transfer
may be ubiquitous in living systems at ambient temperatures. The benefit
of spin-polarized electrons for enhancing chemical selectivity in
multielectron transfer processes is known[53] and is likely manifested in biochemical cycles and cascades. In
addition, the spin polarization reduces backscattering of the electrons
within the protein, due to the coupling of the electron’s linear
momentum to its spin.[17]
Authors: James A Maier; Carmenza Martinez; Koushik Kasavajhala; Lauren Wickstrom; Kevin E Hauser; Carlos Simmerling Journal: J Chem Theory Comput Date: 2015-07-23 Impact factor: 6.006
Authors: Joshua S Kretchmer; Nicholas Boekelheide; Jeffrey J Warren; Jay R Winkler; Harry B Gray; Thomas F Miller Journal: Proc Natl Acad Sci U S A Date: 2018-05-29 Impact factor: 11.205
Authors: Shirsendu Ghosh; Koyel Banerjee-Ghosh; Dorit Levy; David Scheerer; Inbal Riven; Jieun Shin; Harry B Gray; Ron Naaman; Gilad Haran Journal: Proc Natl Acad Sci U S A Date: 2022-08-22 Impact factor: 12.779