Literature DB >> 34048653

Considerations of Recent All-Atom Lipid Force Field Development.

Jeffery B Klauda.   

Abstract

Molecular simulations of biological molecules require an accurate description of molecular interactions through a force field (FF). The focus of this Perspective is on all-atom lipid FFs. Recent additions to the CHARMM36 lipid FF continue to expand a researcher's ability to probe membrane structure and function with a wide variety of biologically important lipids. Currently, there is an effort to reduce the assumptions in all-atom lipid FFs. The inclusion of long-range dispersion interaction through particle-mesh Ewald is allowing for more accurate descriptions of lipid bilayer and monolayer properties without additional computational cost. Soon, simulations with lipid FFs will no longer depend on short-range cutoffs and will accurately represent long-range dispersion. This requires efficient FF parametrization with an automated approach due to FF complexity. In addition, polarizable FFs for lipids will be important for the next generation of simulations that accurately represent how molecule interactions respond to a varied environment.

Entities:  

Year:  2021        PMID: 34048653     DOI: 10.1021/acs.jpcb.1c02417

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  2 in total

1.  Dynorphin A induces membrane permeabilization by formation of proteolipidic pores. Insights from electrophysiology and computational simulations.

Authors:  D Aurora Perini; Marcel Aguilella-Arzo; Antonio Alcaraz; Alex Perálvarez-Marín; María Queralt-Martín
Journal:  Comput Struct Biotechnol J       Date:  2021-12-16       Impact factor: 7.271

2.  Accurate Simulations of Lipid Monolayers Require a Water Model with Correct Surface Tension.

Authors:  Carmelo Tempra; O H Samuli Ollila; Matti Javanainen
Journal:  J Chem Theory Comput       Date:  2022-02-08       Impact factor: 6.006

  2 in total

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