Literature DB >> 34047992

Plant Lipid Databases.

Peter Dörmann1.   

Abstract

Along with the increase in knowledge on lipid metabolism during the last years, different lipid databases were established in a web-based system. This chapter presents an overview on plant lipid databases for simple and complex lipids focusing on nomenclature, structures as well as physical and chemical properties. Many databases provide information on methods and protocols for lipid isolation, fractionation, and analysis, including lipidomic procedures. References to the lipid literature are included in all databases. Additional data including mass spectra derived from GC-MS, LC-MS, and LC-MS/MS experiments are included in specialized lipid databases. An introduction is presented on how to use the most important lipid databases.

Entities:  

Keywords:  Database; Library; Lipidomics; Mass spectrometry; Structures

Year:  2021        PMID: 34047992     DOI: 10.1007/978-1-0716-1362-7_25

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  11 in total

1.  Using the KEGG database resource.

Authors:  Kiyoko F Aoki; Minoru Kanehisa
Journal:  Curr Protoc Bioinformatics       Date:  2005-10

2.  LIPID MAPS-Nature Lipidomics Gateway: An Online Resource for Students and Educators Interested in Lipids.

Authors:  Manish Sud; Eoin Fahy; Dawn Cotter; Edward A Dennis; Shankar Subramaniam
Journal:  J Chem Educ       Date:  2012-01-10       Impact factor: 2.979

Review 3.  A comprehensive classification system for lipids.

Authors:  Eoin Fahy; Shankar Subramaniam; H Alex Brown; Christopher K Glass; Alfred H Merrill; Robert C Murphy; Christian R H Raetz; David W Russell; Yousuke Seyama; Walter Shaw; Takao Shimizu; Friedrich Spener; Gerrit van Meer; Michael S VanNieuwenhze; Stephen H White; Joseph L Witztum; Edward A Dennis
Journal:  J Lipid Res       Date:  2005-02-16       Impact factor: 5.922

Review 4.  Lipid classification, structures and tools.

Authors:  Eoin Fahy; Dawn Cotter; Manish Sud; Shankar Subramaniam
Journal:  Biochim Biophys Acta       Date:  2011-06-16

5.  XCMS2: processing tandem mass spectrometry data for metabolite identification and structural characterization.

Authors:  H P Benton; D M Wong; S A Trauger; G Siuzdak
Journal:  Anal Chem       Date:  2008-07-16       Impact factor: 6.986

6.  PlantFAdb: a resource for exploring hundreds of plant fatty acid structures synthesized by thousands of plants and their phylogenetic relationships.

Authors:  John Ohlrogge; Nick Thrower; Vandana Mhaske; Sten Stymne; Melissa Baxter; Weili Yang; Jinjie Liu; Kathleen Shaw; Basil Shorrosh; Meng Zhang; Curtis Wilkerson; Bertrand Matthäus
Journal:  Plant J       Date:  2018-11-09       Impact factor: 6.417

7.  Shorthand notation for lipid structures derived from mass spectrometry.

Authors:  Gerhard Liebisch; Juan Antonio Vizcaíno; Harald Köfeler; Martin Trötzmüller; William J Griffiths; Gerd Schmitz; Friedrich Spener; Michael J O Wakelam
Journal:  J Lipid Res       Date:  2013-04-02       Impact factor: 5.922

8.  LMSD: LIPID MAPS structure database.

Authors:  Manish Sud; Eoin Fahy; Dawn Cotter; Alex Brown; Edward A Dennis; Christopher K Glass; Alfred H Merrill; Robert C Murphy; Christian R H Raetz; David W Russell; Shankar Subramaniam
Journal:  Nucleic Acids Res       Date:  2006-11-10       Impact factor: 16.971

9.  LipidHome: a database of theoretical lipids optimized for high throughput mass spectrometry lipidomics.

Authors:  Joseph M Foster; Pablo Moreno; Antonio Fabregat; Henning Hermjakob; Christoph Steinbeck; Rolf Apweiler; Michael J O Wakelam; Juan Antonio Vizcaíno
Journal:  PLoS One       Date:  2013-05-07       Impact factor: 3.240

10.  PubChem Substance and Compound databases.

Authors:  Sunghwan Kim; Paul A Thiessen; Evan E Bolton; Jie Chen; Gang Fu; Asta Gindulyte; Lianyi Han; Jane He; Siqian He; Benjamin A Shoemaker; Jiyao Wang; Bo Yu; Jian Zhang; Stephen H Bryant
Journal:  Nucleic Acids Res       Date:  2015-09-22       Impact factor: 16.971

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  1 in total

Review 1.  Three strategies of transgenic manipulation for crop improvement.

Authors:  Haoqiang Yu; Qingqing Yang; Fengling Fu; Wanchen Li
Journal:  Front Plant Sci       Date:  2022-07-22       Impact factor: 6.627

  1 in total

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