| Literature DB >> 34042151 |
Caixia Xian1, Mingwei Zhu1, Tianying Nong1, Yiqiang Li2, Xingmei Xie1, Xia Li1, Jiangui Li2, Jingchun Li2, Jianping Wu2, Weizhe Shi2, Ping Wei1, Hongwen Xu2, Ya-Ping Tang1.
Abstract
Hereditary multiple exostoses (HME) is a rare skeletal disorder characterized by the formation of multiple benign cartilage-capped tumors, usually in the metaphyseal region of the long bones. Over 70% of HME cases arise from monoallelic mutations in either of the two genes encoding the heparan sulfate (HS) synthesis enzymes, ext1 and ext2. To identify more HME-associated mutations, genomic DNA from members of five independent consanguineous families with HME was sequenced with whole exome sequencing (WES). A novel heterozygous splice site mutation (c.1173+2T>A) in ext2 was detected in all three affected members of family V. Further study showed that the novel mutation caused exon 7 of ext2 mRNA to be skipped during splicing and caused a frameshift after the codon for Arg360, which results in the appearance of new 43 codons, followed by a termination codon. Although the resulting truncated protein was still localized to the Golgi, similar to the full-length EXT2, its HS synthesis activity decreased by 40%. In this study, a novel splice site mutation in ext2 was identified and suggested to be a pathogenic mutation of HME, which may expand the genetic etiology spectrum of HME and may be helpful for clinical genetic counseling and prenatal diagnosis.Entities:
Year: 2021 PMID: 34042151 PMCID: PMC8156126 DOI: 10.1590/1678-4685-GMB-2020-0334
Source DB: PubMed Journal: Genet Mol Biol ISSN: 1415-4757 Impact factor: 1.771
Figure 1 -Pedigree of five families with HME. A: family I; B: family II; C: family III; D: family IV; E: family V. Arrow indicates the proband of each family. Question marks inside a circle or square indicated suspected patients. An oblique line means that the individual is decreased.
Clinical data of HME patients.
| Subject | Proband sex | Age of onset | Localization |
|---|---|---|---|
| I-1 | Female | 3 years | Right ulna |
| II-1 | Male | 4 years | Bilateral distal femur, proximal tibia and fibula, distal tibia, left scapula |
| III-1 | Male | 1 years | Right tibia, right ulna |
| IV-1 | Male | 2 years | Left ulna, ribs |
| V-1 | Female | 4 years | Thoracic cage, right index finger, right seventh rib, right ulna |
Mutations identified in ext1 and ext2 gene from HME families.
| Family | Gene | cDNA changea | Protein change | Status |
|---|---|---|---|---|
| I |
| c.1776C>G | p.Tyr592X | Novel |
| II | No mutations detected | |||
| III |
| c.600G>A | p.Try200X | Recurrent |
| IV |
| c.1286G>A | p.Try429X | Recurrent |
| V |
| c.1173+2T>A | p.Arg360fs43X | Novel |
The adenosine of the start codon is assigned nucleotide position +1.
Figure 2 -Identification of a novel mutation in ext2 gene cosegregated with HME. A. Sanger sequencing results from genomic DNA of the members of family V. All HME patients, V-1, V-4 and V-7, carry the heterozygous mutation of ext2 gene, c.1173+2T>A. The unaffected member is as control. The black arrows indicate the point of mutation. B. X-radiographic examination of the proband of Family V. Osteochondroma was indicated in the distal end of the right index finger, distal end of the right ulnar by white arrows.
Figure 3 -Aberrant splicing transcripts of ext2 with exon7 being skipped. A. Alignment of ext2 homologous gene sequences from 7 species. T residue (indicated by star mark) at the second position of intron 7 is included in a highly conserved splicing donor site. B. The position of primers designed to distinguish the two potential outcomes, exon 7 skipping and cryptic splice site activation in exon 7, was shown. The table showed the predicting length of the PCR products amplified by the three pair of primers in the case of exon 7 skipping. C, D, E. The agarose gel electrophoresis of the PCR products. F. TA cloning and sequencing results of aberrant splicing transcripts of ext2. Three of the five randomly picked clones showed exon 7 skipping.
Figure 4 -Molecular consequence of the abnormal splicing in ext2 transcripts. A. Reverse transcription-quantitative polymerase chain reaction analysis of the expression levels of ext2 mRNA in HME patient and control (n=4, P< 0.001). B. Western blot of recombinant N terminal-myc tagged full-length and mutant EXT2 protein expressed in HEK293 cells.
Figure 5 -The truncated EXT2 protein has normal localization, but reduced activity of HS synthesis. A. Subcellular localization of myc-EXT2-DEL and myc-EXT2-FL (green) in HEK293 cells. Golgi was indicated by GM130 (red). Nucleus was indicated by DAPI (blue). B. Statistical analysis of the relative expression level of HSPGs synthesized by HEK293 cells transfected with the empty vector (Mock) or the EXT constructs as indicated. EXT2-FL/EXT1 vs. Mock, P=0.042; EXT2-DEL/EXT1 vs. EXT2-FL/EXT1, P=0.028.