| Literature DB >> 34041313 |
Jacqueline Juergens1,2,3, Simon Bruslund2,3,4,5, Johanna Staerk2,3,6, Rikke Oegelund Nielsen2,3,7, Chris R Shepherd8, Boyd Leupen8, Kanitha Krishnasamy9, Serene Chui Ling Chng9, John Jackson2, Rita da Silva2,6, Antony Bagott10, Romulo Romeu Nóbrega Alves11, Dalia A Conde2,3,6.
Abstract
In this article we present a standardized dataset on 6659 songbirds (Passeriformes) highlighting information relevant to species conservation prioritization with a main focus to support the Convention on International Trade in Endangered Species of Wild Fauna and Flora (CITES). Data were collected from both scientific and grey literature as well as several online databases. The data are structured into six knowledge categories: Conventions and Treaties, Human Use, Extinction Risk, Management Opportunities, Biological Information, and Intrinsic Values. The Conventions and Treaties category includes the listings for two international conventions, CITES and the Convention on the Conservation of Migratory Species of Wild Animals (CMS), as well as EU listings for the EU Wildlife Trade Regulations and the EU Birds Directive. The Human Use category contains information on both regulated trade collected from the CITES Trade Database and the United States' Law Enforcement Management Information System (LEMIS), and highly aggregated data on seizures which we obtained from TRAFFIC, the United Nations Office on Drugs and Crime (UNODC) and two data sources on traditional medicine. We also present, for the first time, the complete Songbirds in Trade Database (SiTDB), a trade database curated by taxon expert S. Bruslund based on expert knowledge, literature review, market surveys and sale announcements. Data on the types of human use, including traditional medicine are also provided. The knowledge area on Extinction Risk contains data on the species' IUCN Red List status, the Alliance for Zero Extinction Trigger Species status, site and population at the site, the species' IUCN Climate Change Vulnerability Assessment, and the listing of priority species at the Asian Songbird Crisis Summit. In the Management Opportunities category, we gathered data on ex-situ management from Species360 zoo holdings as well as species management plans from the European and North American Zoo Associations (EAZA and AZA, respectively). Biological Information includes data on body mass, clutch size, diet, availability of data from the IUCN Red List on habitat systems, extent of occurrence, generation length, migration pattern, distribution, and biological data from the Demographic Species Knowledge Index, number of occurrences recorded by the Global Biodiversity Information Facility (GBIF) as well as genomic data from the Bird 10 000K Genomes (B10K) project, Vertebrate Genome Project (VGP) and GenBank. Information on invasive species is also part of this knowledge area. The Intrinsic Value category refers to two measures of the species' intrinsic value, namely Ecological and Evolutionary Distinctiveness. In order to make these knowledge areas comparable, we standardized data following the taxonomy of the Handbook of the Birds of the World and Birdlife (Version 4, 2019). The data enable a broad spectrum of analyses and will be useful to scientists for further research and to policymakers, zoos and other conservation stakeholders for future prioritization decisions.Entities:
Keywords: Ex-situ; International conventions; Life history traits; Migratory species; Species management; Threatened species; Trade; Wildlife
Year: 2021 PMID: 34041313 PMCID: PMC8144656 DOI: 10.1016/j.dib.2021.107093
Source DB: PubMed Journal: Data Brief ISSN: 2352-3409
Data repositories and sources used for the taxonomic standardization and across the six knowledge areas. Here we give the number of passerine species for which data was collected from each dataset, the number of species that could be matched to the taxonomy of the Handbook of the World and Birdlife (HBW/Birdlife), and the dataset sources and links if available. Discrepancies between the number of species is due to taxonomic differences and/or other data cleaning steps (see Experimental Design, Materials and Methods). The original taxonomic authority used for each dataset is also given when reported. Note that some databases contain data used in more than one knowledge category. However, for simplicity we only list the database in one of the knowledge categories (refer to the source column in the supplementary data for more detail). CoL = Catalogue of Life, HBW/Birdlife = Handbook of the Birds of the world and BirdLife, TAS = The Howard and Moore Complete Checklist of the Birds of the World.
| Number of species | Number of BirdLife species | |||||
|---|---|---|---|---|---|---|
| Taxonomy | ||||||
| Handbook of the Birds of the | 6659 | 6659 | April 2020 | HBW/Birdlife | Handbook of the Birds of the World and BirdLife International, Handbook of the Birds of the World and BirdLife International digital checklist of the birds of the world. Version 4., (2019). | |
| ITIS Passeriformes Report | 6264 | 6119 | March 2020 | ITIS, Integrated Taxonomic Information System on-line database, (2020). | ||
| Avibase Handbook of the Birds of the | February - December 2020 | HBW/Birdlife | D. Lepage, Avibase - The World Bird Database, (2020). | |||
| Convention on International Trade in Endangered Species of Wild Fauna and Flora (CITES) | 85 | 93 | April 2020 | TAS | UNEP, The Species+ Website, Nairobi, Kenya. Compiled by UNEP-WCMC, Cambridge, UK, (2020). | |
| History of CITES Listings | 110 | 110 | November 2020 | TAS | UNEP-WCMC (Comps.), Checklist of CITES species, Hist. CITES List. (2014) | |
| The Convention on the Conservation of Migratory Species of Wild Animals (CMS) | 442 | 432 | February 2020 | HBW/Birdlife | UNEP, The Species+ Website, Nairobi, Kenya. Compiled by UNEP-WCMC, Cambridge, UK, (2020). | |
| European Union Wildlife Trade Regulations | 127 | 126 | September 2020 | HBW/Birdlife | UNEP, The Species+ Website, Nairobi, Kenya. Compiled by UNEP-WCMC, Cambridge, UK, (2020). | |
| List of birds of the European Union | 53 | 53 | December 2020 | HBW/Birdlife | Council Directive 2009/147/EC on the conservation of wild birds, Official Journal L 020, p. 7, (2009). | |
| Trade | ||||||
| CITES Trade Database | 222 | 177 | June 2020 | TAS | UNEP World Conservation Monitoring Centre, CITES trade statistics derived from the CITES Trade Database, Cambridge, UK. (2020). | |
| IUCN Advanced Search, Usetrade | 2138 | 2138 | June 2020 | HBW/Birdlife | IUCN, IUCN Red List of Threatened Species, Version 2019-1. (2019). | |
| Songbirds in Trade Database (SiTDB) | 6660 | 6659 | September 2020 | HBW/Birdlife | Songbirds in Trade database | This paper |
| United States Fish and Wildlife Service's (USFWS) Law Enforcement Management Information System (LEMIS) | 417 | 286 | - | E.A. Eskew, A.M. White, N. Ross, K.M. Smith, K.F. Smith, J.P. Rodríguez, C. Zambrana-torrelio, W.B. Karesh, P. Daszak, United States wildlife and wildlife product imports from 2000 – 2014, (2020) 1–8. | ||
| TRAFFIC Wildlife Trade Information System (WiTIS) | 371 | 259 | September 2020 | TRAFFIC, Passerine Incidents 2008-2020, Incident dataset, 2020 | Private communication | |
| World WISE Database | 73 | 70 | November 2020 | UNODC, World WISE Database, List of Songbirds Records, (2020). | Private communication | |
| Traditional Medicine | ||||||
| CITES List of species use in Traditional Medicine | 3 | 3 | January 2020 | TAS | CITES, AC18 Doc. 13.1., List of species traded for medicinal purposes., (2002). | |
| Birds of a Feather: Quantitative Assessments of the Diversity and Levels of Threat to Birds Used in African Traditional Medicine | 106 | 106 | January 2020 | HBW/Birdlife | V.L. Williams, A.B. Cunningham, R.K. Bruyns, A. Kemp, Birds of a Feather: Quantitative Assessments of the Diversity and Levels of Threat to Birds Used in African Traditional Medicine, in: R. Alves, I. Rosa (Eds.), Anim. Tradit. Folk Med., Springer, Heidelberg, 2013: pp. 383–420. | |
| 2018 Global AZE map | 102 | 102 | April 28, 2020 | Alliance for Zero Extinction, 2018 Global AZE Map, (2020). | ||
| Identifying the World's Most Climate Change Vulnerable | 5847 | 5782 | W.B. Foden, S.H.M. Butchart, S.N. Stuart, J.C. Vié, H.R. Akçakaya, A. Angulo, L.M. DeVantier, A. Gutsche, E. Turak, L. Cao, S.D. Donner, V. Katariya, R. Bernard, R.A. Holland, A.F. Hughes, S.E. O'Hanlon, S.T. Garnett, Ç.H. Şekercioǧlu, G.M. Mace, Identifying the World's Most Climate Change Vulnerable Species: A Systematic Trait-Based Assessment of all Birds, Amphibians and Corals, PLoS One. 8 (2013). | |||
| IUCN Red List of Threatened Species Status | 6659 | 6659 | April 2020 | HBW/Birdlife | Handbook of the Birds of the World and BirdLife International, Handbook of the Birds of the World and BirdLife International digital checklist of the birds of the world. Version 4., (2019). | |
| Asian Songbird Crisis Summit Priority Species | 28 | 28 | Sept 2020 | HBW/Birdlife | J.G.H. Lee, S.C.L. Chng, J.A. Eaton, Conservation Strategy for Southeast Asian Songbirds in Trade, 2016. | |
| Species360 Zoological Management System | 2018 | 1910 | February 2020 | Species360, Zoological Information Management System (ZIMS), (2020). | ||
| EAZA Passerine Taxon Advisory Group | 175 | 175 | February 2020 | D. Jeggo, T. Pagel, EAZA Passerine Taxon Advisory Group Regional Collection Plan for Songbirds, in: S. Bruslund (Ed.), 1st ed., Cologne & Heidelberg, 2018: | General explanation: | |
| Regional Collection Plan of the EAZA Passeriformes Taxon Advisory Group, Asian Songbirds – Edition One. | 135 | 130 | February 2020 | D. Jeggo, S. Bruslund, K. Traylor-Holzer, W. Van Lint, R. Van der Meer, Regional Collection Plan of the EAZA Passeriformes Taxon Advisory Group, Asian Songbirds – Edition One., 2019: Table 2, 8 – 17 pp. | Internal publication | |
| AZA Species Survival Plans | 31 | 31 | M. Brauns, Pers. Communication | |||
| Body Mass Median/Litter Clutch Size/ Diet | 10254 | 5850/2911/5769 | March 20 | HBW/Birdlife | R.S.C. Cooke, A.E. Bates, F. Eigenbrod, Global trade-offs of functional redundancy and functional dispersion for birds and mammals, Glob. Ecol. Biogeogr. 28 (2019) 484–495. | |
| Vertebrate Genome Project Database - VGP Phase I Genomes | 3 | 3 | March 20 | K.-P. Koepfli, B. Paten, S.J. O'Brien, The Genome 10K Community of Scientists, The Genome 10K Project: A Way Forward, Annu. Rev. Anim. Biosci. 3 (2015) 57–111. 10.1146/annurev-animal-090414-014900. | ||
| Bird 10 000 Genomes (B10K) Project - Passeriformes | 1363 | 962 | April 20 | G. Zhang, Bird sequencing project takes off, Nature. 52 (2015). | ||
| GenBank | 5060 | 4990 | D.A. Benson, M. Cavanaugh, K. Clark, I. Karsch-Mizrachi, D.J. Lipman, J. Ostell, E.W. Sayers, GenBank, Nucleic Acids Res. D1 (2017) D37–D42. | |||
| IUCN Red List Advanced Search, all_other_fields | 6659 | 6659 | June 20 | HBW/Birdlife | IUCN, IUCN Red List of Threatened Species, Version 2019-1. (2019). | |
| Distribution | 6659 | 6659 | March 20 | HBW/Birdlie | IUCN, IUCN Red List of Threatened Species, Version 2019-1. (2019). | |
| Demographic Species Knowledge Index | 6239 | 6095 | January 20 | CoL | D.A. Conde, J. Staerk, F. Colchero, R. da Silva, J. Schöley, H. Maria Baden, L. Jouvet, J.E. Fa, H. Syed, E. Jongejans, S. Meiri, J.M. Gaillard, S. Chamberlain, J. Wilcken, O.R. Jones, J.P. Dahlgren, U.K. Steiner, L.M. Bland, I. Gomez-Mestre, J.D. Lebreton, J.G. Vargas, N. Flesness, V. Canudas-Romo, R. Salguero-Gómez, O. Byers, T.B. Berg, A. Scheuerlein, S. Devillard, D.S. Schigel, O.A. Ryder, H.P. Possingham, A. Baudisch, J.W. Vaupel, Data gaps and opportunities for comparative and conservation biology, Proc. Natl. Acad. Sci. U. S. A. 116 (2019) 9658–9664. | |
| Global Register of Migratory Species (GROMS) | 1049 | 980 | March 20 | Sibley Monroe | K. Riede, The Global Register of Migratory Species Database, GIS Maps and Threat Analysis, Landwirtschaftsverlag, Münster, 2001. | |
| Global Invasive Species Database | 15 | 15 | September 2020 | HBW/Birdlife | Invasive Species Specialist Group ISSG, The Global Invasive Species Database, Version 2015.1. (2015). | |
| Alien Species in the EU | 141 | 140 | October 2020 | HBW/Birdlife | European Commission - Joint Research Centre, European Alien Species Information Network (EASIN), (2020). | |
| IAS of Union Concern | 2 | 2 | October 2020 | HBW/Birdlife | European Commission - Joint Research Centre, European Alien Species Information Network (EASIN), (2020). | |
| Occurrence data all records / only observations | 6773/6620 | 6114/6095 | August 2020 | CoL | GBIF, GBIF Occurrence Download, (2020). | |
| Ecological distinctiveness of birds and mammals at the global scale | 6591 | 6588 | February 2020 | HBW/Birdlife | R.S.C. Cooke, F. Eigenbrod, A.E. Bates, Ecological distinctiveness of birds and mammals at the global scale, Glob. Ecol. Conserv. 22 (2020) e00970. | |
| Evolutionary Distinctiveness Scores - Birds | 6590 | 6588 | February 2020 | HBW/Birdlife | Zoological Society of London, EDGE of Existence, EDGE List Birds. (2019). | |
| EDGE Birds | 246 | 246 | February 2020 | HBW/Birdlife | Zoological Society of London, EDGE of Existence, EDGE List Birds. (2019). | |
Number of species per appendix or scheme for the four conventions listed in this dataset, CITES, CMS, the EU Wildlife Trade Regulations and the EU Birds Directive.
| Convention | Appendix/Scheme | Number of species |
|---|---|---|
| CITES | I | 12 |
| II | 77 | |
| III | 4 | |
| CMS | I | 4 |
| I/II | 11 | |
| II | 417 | |
| Aquatic Warbler | 1 | |
| Southern South American Grassland Birds | 8 | |
| EU Wildlife Trade Regulations | A | 13 |
| B | 69 | |
| C | 3 | |
| D | 41 | |
| EU Bird Directive | I | 39 |
| IIb | 12 | |
Taxa under a Memorandum of Understanding (MOU). MOUs are agreements between parties to protect particular taxa in addition to listings of species in the two CMS appendixes.
Fig. 1Venn diagram showing the number of species in each trade database and their overlap. To make the data sets comparable only data for live, commercially traded individuals since 2006 were used for the CITES Trade Database (CITES TDB) and the Law Enforcement Management Information System (LEMIS). For the TRAFFIC Wildlife Trade Information System (TRAFFIC International), the Songbirds in Trade Database (SiTDB International) and IUCN Red List (IUCN) only data referring to international trade entries were considered. This figure was generated using the Bioinformatics & Evolutionary Genomics webtool: (http://bioinformatics.psb.ugent.be/webtools/Venn/).
Overview of the Songbirds in Trade database (SiTDB) with number of species per variable and percentage relative to the total number of songbird species (6659). For more detail see Experimental Design, Materials, and Methods.
| Variable | Number of species | % |
|---|---|---|
| Trade Interest | 1978 | 29.7 |
| Domestic Trade | 1137 | 17.1 |
| International Trade | 986 | 14.8 |
| Primary Source of Trade (wild-caught/captive-bred) | 1551 | 23.3 |
| Trade as contributing threat to populations | 206 | 3.1 |
| Perceived relative trade volume globally | 1555 | 23.4 |
| Perceived relative trade volume internationally | 988 | 14.8 |
| Volume of EU trade | 914 | 13.7 |
| Wild source entering EU Trade after 2006 | 842 | 12.6 |
| EU captive breeding confirmed | 912 | 13.7 |
| Available wild source in EU 2020 | 913 | 13.7 |
| Substantial uncoordinated ex situ breeding effort ongoing 2020 | 180 | 2.7 |
| Difficulty of captive breeding | 1568 | 23.5 |
| Coordinated transparent ex-situ breeding program established 2020 | 78 | 1.2 |
| Known trade routes | 805 | 12.1 |
| Known Affected Subspecies | 154 | 2.3 |
| Domestication and mutations | 34 | 0.5 |
Number of passerine species listed in different conservation prioritisation schemes per IUCN Red List Category including: Red List category, species with high vulnerability to climate change, Alliance for Zero Extinction (AZE) trigger species, and Asian Songbird Crisis Priority Species identified by the IUCN SSC Asian Songbird Trade Specialist Group. LC = Least Concern, NT = Near Threatened, VU = Vulnerable, EN = Endangered, CR = Critically Endangered, EW = Extinct in the Wild, EX = Extinct.
| IUCN Red List | Total Number of Species | |||
|---|---|---|---|---|
| IUCN RL | High vulnerability | AZE Trigger | Asian Songbird | |
| Category | category | to climate change | Species | Crisis |
| LC | 5358 | 720 | 0 | 11 |
| NT | 527 | 173 | 0 | 5 |
| VU | 374 | 125 | 1 | 2 |
| EN | 216 | 105 | 49 | 5 |
| CR | 94 | 40 | 50 | 5 |
| EW | 1 | 0 | 1 | 0 |
| EX | 60 | 5 | 1 | 0 |
| DD | 29 | 6 | 0 | 0 |
Fig. 2Venn diagram showing the overlap between the number of species that have been assessed as threatened (Vulnerable, Endangered, Critically Endangered) or Extinct in the Wild by the IUCN Red List (= Red List Threatened), highly vulnerable to climate change by Foden et al. (2013) (= High Vulnerability to Climate Change), highlighted by the IUCN SSC Asian Songbird Trade Specialist group as being part of the Asian Songbird Crisis (= Asian Songbird Crisis) and species listed as a Trigger Species by the Alliance for zero extinction (= Alliance for Zero extinction). The plot was made using the R package VennDiagram (Table 6).
List of R packages used for data collection and figures in this publication.
| Package name | URL | Citation |
|---|---|---|
| rredlist | Scott Chamberlain (2020). rredlist: "IUCN" Red List Client. R package version 0.7.0. | |
| countrycode | Arel-Bundock et al., (2018). countrycode: An R package to convert country names and country codes. Journal of Open-Source Software, 3(28), 848. | |
| lemis | Noam Ross, Evan A. Eskew, Allison M. White and Carlos Zambrana-Torrelio (2020). lemis: The LEMIS Wildlife Trade Database. | |
| treemapify | David Wilkins (2019). treemapify: Draw Treemaps in "ggplot2". R package version 2.5.3. | |
| bubbles | Joe Cheng, Mike Bostock and Jeff Heer (2020). bubbles: d3 Bubble Chart htmlwidget. R package version 0.2. | |
| VennDiagram | Hanbo Chen (2018). VennDiagram: Generate High-Resolution Venn and Euler Plots. R package version 1.6.20. | |
| taxize | Scott Chamberlain and Eduard Szocs (2013). taxize - taxonomic search and retrieval in R. F1000Research, 2:191. | |
| ggplot2 | H. Wickham. ggplot2: Elegant Graphics for Data Analysis. Springer-Verlag New York, 2016. |
Fig. 3Circle chart showing the number of individuals per species kept in Species360 members (i.e., species holdings), their ex-situ management plans and IUCN Red List status. Each circle represents a species from the Species360/ZIMS database, and their circle size represents the number of individuals. The position of each species is the same across figures and the colour corresponds to either (a) the number of individuals, (b) the ex-situ management plan in the European Association for Zoos and Aquaria (EAZA) or the American Association for Zoos and Aquariums (AZA) or (c) their IUCN Red List status. Species with the 10 largest holding sizes are labelled: 1. Taeniopygia guttata, 2. Lonchura oryzivora, 3. Chloebia gouldiae, 4. Ploceus cucullatus, 5. Ploceus castaneiceps, 6. Leucopsar rothschildi, 7. Foudia madagascariensis, 8. Quelea quelea, 9. Pycnonotus jocosus, 10. Lamprotornis superbus. EEP = European Endangered Species Program, ESB = European Studbooks. LC = Least Concern, NT = Near Threatened, VU = Vulnerable, EN = Endangered, CR = Critically Endangered, EW = Extinct in the Wild, EX = Extinct. Plots were made using the R package bubbles (Table 6).
Summary of available biological data collected from eight data repositories, the Demographic Species Knowledge Index (Conde et al. 2019), the IUCN Red List, Cooke et al. 2018, the Global Register of Migratory Species (GROMS), the Global Biodiversity Information Facility (GBIF), the Bird 10 000 Genomes (B10K) Project, the Vertebrate Genome Project (VGP), GenBank, the Global Invasive Species Database (GISD) and the European Alien Species Information Network (EASIN).
| Category | Number of species | % | Description |
|---|---|---|---|
| Body Mass | 5850 | 87.9 | Median adult body mass |
| Clutch size | Cooke: 2911 | 43.7 | Clutch size from Cooke et al. 2019, |
| Diet | 5850 | 87.9 | Diet type divided into 5 categories (1 = plant/seed, 2 = fruit/nectar, 3 = vertebrates, including carrion, 4 = invertebrates and 5 = omnivore) |
| Extent of Occurrence | 6606 | 99.2 | Extent of species occurrence |
| Elevation lower limit | 2153 | 32.3 | Upper limit of species occurrence |
| Elevation upper limit | 4171 | 62.6 | Lower limit of species occurrence |
| Population Size | 1043 | 15.7 | Population size range |
| Year Of Population Estimate | 1576 | 23.7 | Year population size was estimated |
| Locations Number | 647 | 9.7 | Number of locations species occurs at |
| Generation Length | 6619 | 99.4 | Length of one generation in years |
| Movement Pattern | 6651 | 99.9 | Movement patterns, Full Migrant, Altitudinal Migrant, Nomadic, Not a Migrant, Unknown |
| Subpopulation Numbers | 700 | 10.5 | Number of global subpopulations |
| Distribution country | 6659 | 100 | Countries in which species occurs |
| Distribution region | 6658 | 99.9 | Regions of species distribution |
| Distribution continent | 6659 | 100 | Continents of species distribution |
| Age at first reproduction | 416 | 6.2 | Age at first reproduction, for either one sex or unspecified sex |
| Crude mortality | 427 | 6.4 | Any information regarding crude death rates |
| Broods | 622 | 9.3 | Number of broods per year |
| Interbirth interval | 19 | 0.3 | Time between births in years |
| Life table | 5 | 0.1 | Life table with age or stage specific fertility and death rates available |
| Matrix death rates | 115 | 1.7 | Matrix with age or stage specific death rates available |
| Matrix fertility and death | 86 | 1.3 | Matrix with fertility and death rates available |
| Maximum recorded lifespan | 586 | 8.8 | Longest lifespan, time of individual carrying ring or maximum longevity |
| Proportion of reproductive females | 11 | 0.2 | Proportion of reproductive females per age class |
| Recruitment | 1 | 0.02 | Proportion of fledglings recruited as breeders in the local population |
| DSKI mortality | 758 | 11.4 | Index indicating quality of mortality data and availability across 22 data repositories standardized in Conde et al. 2019 |
| DSKI fertility | 3523 | 52.9 | Index indicating quality of fertility data and availability across 22 data repositories standardized in Conde et al. 2019 |
| DSKI mortality fertility | 3540 | 53.2 | Index indicating quality of mortality and fertility data and availability across 22 data repositories standardized in Conde et al. 2019 |
| Migration GROMS | 980 | 14.7 | Migratory species according to the GROMS database |
| Number of Occurrences | 6114 | 91.8 | Total number of Occurrences recorded for each species in GBIF between 2000 and 2019, for all bases of record |
| Number of Occurrences from Observations | 6095 | 91.5 | Total number of Occurrences recorded for each species in GBIF between 2000 and 2019, with basis of record being either Observation, Human Observation or Machine Observation |
| B10K database | 962 | 14.4 | Species listed in the B10K database |
| VGP status | 3 | 0.05 | Status listed by the VGP |
| GenBank sequence type | 4990 | 74.9 | Number of species |
| Invasive Species GISD | 15 | 0.2 | Invasive species in the GISD |
| Alien Species In EU | 140 | 2.1 | Alien species not native in any part of the EU |
| IAS of Union Concern | 2 | 0.03 | Alien species of Union concern in the EU |
Fig. 4Number of species recorded on GenBank with a mitochondrial sequence (mitochondrial) gene sequence, genetic markers (markers), RNA sequence, conserved element, other type of genetic information (other), anonymous locus, pseudogene, whole genome sequence or genomic survey sequence. Plot was made in R using the ggplot2 package (Table 6).
Fig. 5Treemap of species recorded in the Songbirds in Trade Database (SiTDB) as internationally traded and their listings in different Invasive Species databases. Each small square represents a species, ordered by families (bigger squares), coloured by their presence in the different databases. If species are covered by more than one database this is shown with a separate colour. AlienEU = Species recorded in the European Alien Species Information Network (EASIN) as alien in the EU, GISD = Species recorded in the Global Invasive Species Database, IASofConcern = Species recorded in the EASIN as alien and of Union concern. The plot was made using the R packages treemapify and ggplot2 (Table 6).
Description of categorical variables in the columns “SiTDB_int_dom_perc_trade_vol_2015_20”, “SiTDB_int_perc_trade_vol_2015_21” and “SITDB_ vol_trade_in_eu_2015_20”. All perceived trade volumes are given relative to the population size.
| Categorical variable | Description |
|---|---|
| Extreme | Indicates species for which the documentation of trade is recurring and continuously, or with trade numbers in thousands of individuals |
| High | Indicates species for which the documentation of trade is recurring and frequent, including species continuously found or volumes, in the hundreds of individuals, reported in trade across the five types of data sources. It accounts as well for proportionally high trade in threatened species with very small populations. For example, trade of 10 individuals can be considered high for a species such as the critically endangered Javan Green Magpie |
| Moderate | Indicates that we found trade recurring on a regular basis also applies for those species for which we found only few individuals being traded |
| Low | Indicates that a species is traded but appears only in one or few publications or data sources or only one or a few individuals are reported in the trade |
| Unknown | Indicates species for which we found evidence of trade but were not able to do a qualitative assessment of the level of trade given the data. |
| Subject | Species Conservation, Management, Monitoring, Policy, Law |
| Specific subject area | Biology, Aves, Passeriformes, IUCN Red List, Vulnerability to Climate Change, CITES, CMS, AZE, EDGE, Captive husbandry, Genomics, Wildlife trade, Life history traits |
| Type of data | Table |
| How data were acquired | Data: Online databases, scientific and grey literature, webpages |
| Data format | Raw |
| Parameters for data collection | Data were collected across the knowledge areas of Conventions and Treaties, Human Use, Extinction Risk, Management Opportunities, Biological Information and Intrinsic Values under the Species Knowledge Index methodology (Conde et al. 2019) for the 6659 Passeriformes species described by the Handbook of the Birds of the world and Birdlife (Version 4, 2019). In addition, we added data on songbird trade from the grey literature, publications, websites, and expert visits to markets to existing information in the Songbirds in Trade Database (SiTDB). The aims were to collect and standardize data relevant for the prioritization of species conservation actions to support the decision-making process that regulates species’ international trade by CITES, and to identify knowledge gaps for future research. |
| Description of data collection | Data were collected from open online databases, websites, and supplementary data from peer-reviewed publications. The links to all publicly available data are provided in Table 1. Data on zoo species holdings in the ZIMS database were provided directly by Species360. All data compiled on songbird trade from grey literature, social media sales postings, market visits by experts, and expert opinion were compiled and standardized into a unique spreadsheet that we named The Songbirds in Trade Database (SiTDB), curated and led by S. Bruslund. Species Survival plans from the American Association from Zoos and Aquariums (AZA) were obtained from private communication with M. Brauns. Taxonomy was standardized following the Handbook of the Birds of the World and Birdlife taxonomy (Version 4, 2019). All data processing and analyses were carried out using the open-source software R. |
| Data source location | Global data and regional data for trade and ex-situ programs (Europe, North America & Global), legislation (Europe & Global) and traditional medicine use (Africa & Global) |
| Data accessibility | With the article, in Dryad ( |