| Literature DB >> 34040514 |
Dong-Hua Bin1,2, Shi-Ying Zhang2,3,4, Min Zhan1, Ling Li2, Ying-Qiu Li5, Xing Zhou1, Fang-Guo Lu5, Qing Zhou1, Qing-Hu He6.
Abstract
Background: Ureaplasma urealyticum (UU) infection is the most common cause of male infertility. Zhibai Dihuang Decoction (ZBDHD) can improve the rate of forwarding motility sperm, sperm deformity rate, seminal plasma zinc and refined berry sugar levels.Entities:
Keywords: Chinese medicine; Zhibai Dihuang decoction; bioinformatics; herb medicine; integrated pharmacological; orchitis; ureaplasma urealyticum
Year: 2021 PMID: 34040514 PMCID: PMC8141734 DOI: 10.3389/fphar.2021.602543
Source DB: PubMed Journal: Front Pharmacol ISSN: 1663-9812 Impact factor: 5.810
FIGURE 1Flow chart of this research.
FIGURE 2The results of HPLC. (A): Loganin solution; (B): ZBDHD solution.
FIGURE 3ZBDHD-orchitis PPI Network (Pink circles stand for ZBDHD target, Blue circles stand for orchitis targets, purple circles stand for ZBDHD-orchitis target).
FIGURE 4Clusters of ZBDHD-orchitis PPI Network (Pink circles stand for ZBDHD target, Blue circles stand for orchitis targets, purple circles stand for ZBDHD-orchitis target).
Clusters of DGBXD known Target-AS PPI Network.
| Cluster | Score | Nodes | Edges | Targets and genes |
|---|---|---|---|---|
| 1 | 56.878 | 99 | 2,787 | IL18, ADORA1, IL1RN, GAPDH, ADORA3, CD40LG, IL4, CXCL8, NOS2, TLR2, CASP1, MPO, NLRP3, FOXP3, IL2, IL17A, CD68, IL1A, IL1R1, IL13, SAA1, IFNG, ALB, ICAM1, FASLG, TNFRSF1B, INS, VCAM1, IL5, ARG1, MAPK3, SELL, TLR4, TLR7, IL1B, TLR3, CCL2, CD40, CXCL10, CXCR2, C3, CCR3, CD28, CNR1, CNR2, TLR1, TNF, TLR8, TLR5, CCR5, CTLA4, TLR9, NPY, GPR18, CSF2, HTR1A, HTR1B, SELE, HTR1D, ADRA2A, ADRA2B, TLR6, ADRA2C, CD86, GPER1, CD80, TLR10, GRM4, CCL3, GRM7, GRM8, CHRM2, IL6, IFNB1, PTGS2, GABBR1, GABBR2, ANXA1, CASP3, TNFSF13B, AKT1, VEGFA, TAS1R2, STAT3, EGF, ADCY1, ADCY2, ADCY5, DRD2, DRD3, DRD4, OPRK1, IL10, TNFRSF1A, NOD2, HCAR2, HCAR3, CRP, CCR1 |
| 2 | 17.309 | 56 | 476 | GABRP, GABRQ, AR, PIK3CA, LARS, GABRR1, TARS, GABRB1, REN, CARS2, AHR, F2, GARS, CARS, GATB, NLRP1, YARS, ATN1, PYCARD, FARS2, EARS2, ESR1, HARS, DARS, VARS, PARS2, YARS2, PRL, FARSA, FARSB, TARS2, IARS2, IARS, AARS, LARS2, GABRG3, AARS2, VDR, HSPD1, DARS2, SOD2, GABRA2, GABRA3, GABRA4, GABRA5, GABRA6, NR3C1, KARS, SARS, NARS2, MEFV, HPGDS, EPRS, CFTR, GABRD, GABRE |
| 3 | 12.231 | 53 | 318 | HNF4A, NOS1, SLC32A1, IGF1R, PTPN1, GABRB2, GABRB3, IFNA2, GAD1, GAD2, GRID2, PGR, PRTN3, ESR2, EPOR, MRAP, GRIN3A, GRIN3B, HSP90B1, GABRG1, GABRG2, PTH, SLC1A1, SLC1A2, SLC1A3, GRIK2, HLA-DRB1, GRIK4, SOD1, GRIK5, PTPN22, GLRB, GRIA1, ADRBK1, GLRA1, GLRA2, GLRA3, TNFRSF10A, GRIA4, GAPDHS, HTR3B, DRD1, GABRA1, SERPINB3, CTSG, MAPK10, SAG, IL12RB2, GRIN2B, GRIN2D, SREBF1, GRM1, IL12A |
| 4 | 8.311 | 46 | 187 | COX5A, ENO1, VCP, COX5B, FTL, GM2A, MT-CO1, GRIN1, MT-CO2, GRIA2, GRIA3, COX8A, PTGS1, COX6C, PTK2B, COX6B1, LYZ, COX4I1, RPL11, RPL23A, GMPS, RPL15, TUBB, COX6A2, DNMT1, EFTUD1, DRD5, GRIN2A, ACSS2, RPL19, RPL37, TH, COX7B, IDH2, GRIN2C, COX7C, RPL13A, RPL26L1, RPL7A, AKR1B1, GLUD1, RPL23, IMPDH1, ALDH5A1, RSL24D1, RPL10L |
| 5 | 6.72 | 51 | 168 | GSTP1, ACO2, LTB4R2, SLC6A2, SLC6A3, SLC6A4, MT-CO3, FURIN, HTR2B, DHRS4, HTR2C, GNMT, ADA, GNAS, IL4I1, SERPINA1, AGXT2, DAO, CRH, F2RL1, PIPOX, LGALS1, ADORA2A, CYP19A1, CLU, KLK3, LDHA, PRLR, PECR, LTB4R, AK1, SLC11A1, ALAS1, ALAS2, F5, GCK, FFAR1, DBH, BAAT, ACOX1, GCAT, HAO1, G6PD, OGDH, HAMP, LPL, ABL1, CS, IDH1, MDH2, HMGCL |
| 6 | 6 | 17 | 48 | SYK, NFKBIA, SRC, IFNA1, NFKB1, IL6R, CYBB, NFKB2, ELANE, TGFB1, NELFCD, JAK2, IL17F, FAS, IL2RA, KLRK1, STAT4 |
| 7 | 6 | 11 | 30 | POLE2, POLA1, DTYMK, PAICS, PNP, NT5C2, APRT, AK2, RAD51, POLE, ITPA |
| 8 | 5.438 | 33 | 87 | GLDC, FPGS, KIF2C, UBC, SHMT1, FEN1, SHMT2, GLS2, ADSSL1, ABCC1, ASS1, ABCC2, ADK, CTPS1, SLCO1B3, ACY1, CYP2C8, NAGS, RRM2B, AURKB, DCK, NR1I2, CYP27B1, GATM, MTAP, OAT, SLC25A4, GCSH, AMD1, PPIF, RRM2, AGXT, ADSS |
| 9 | 4.833 | 25 | 58 | IL23R, TNFAIP3, ITGB2, HSP90AA1, PLG, NOS3, CD4, IRF8, LCK, B2M, ITGAL, CAMP, CREB1, PPARG, S100B, IL12RB1, LCN2, THBD, GPT, LGALS3, CD1E, KITLG, CAT, ACE, CTSB |
| 10 | 4.718 | 40 | 92 | ALDH1A1, SCN5A, SIRT3, ASNS, OPLAH, BHMT, GOT2, PPAT, FTCD, ALDH2, HBB, MTR, SCN3A, SCN3B, LTF, SLC18A2, HTR3A, SDS, CANT1, GCLM, ASPA, GLS, SAA4, BCAT1, MTRR, PYGM, SAA2, ADH5, LTA4H, VLDLR, GLUD2, BHMT2, FTH1, IMPDH2, MTTP, SCN8A, SCN2B, MB, HK1, SCN4B |
| 11 | 4.5 | 5 | 9 | SHBG, SRD5A1, AKR1C3, HSD17B1, CYP17A1 |
| 12 | 4 | 4 | 6 | PVR, KIR2DL1, MICB, KIR3DL1 |
| 13 | 3.933 | 31 | 59 | PRKAR2B, GOT1, ATP5C1, RXRA, HSPA8, OTC, CES1, TAT, AK8, SLC25A12, PAM16, SLC25A13, ATP5B, ABCG1, GLUL, PDE4B, PDE4D, PYCR1, NR1H4, FKBP1A, POLB, ARG2, PYGL, BCAT2, POLE3, POLE4, PPIG, GPT2, ME2, AZIN2, PRKAR1A |
| 14 | 3.9 | 21 | 39 | ACTA1, SCN1B, MT-ND1, TYR, SKIV2L, HGS, PSMD2, CCT3, LRP2, CAD, SCN10A, EEF2, AFP, RPL3, METAP2, SPTBN1, RPL8, APOH, SCN4A, SCN9A, EPN1 |
| 15 | 3.6 | 6 | 9 | PPARA, LPA, CP, HMGCR, PON1, MTHFR |
| 16 | 3.6 | 6 | 9 | AADAT, KYNU, AASS, NADSYN1, ENPP1, QPRT |
| 17 | 3.333 | 16 | 25 | YWHAE, ITPR1, SCN1A, CALM1, PLD2, RARG, HDAC8, HDAC9, RXRB, RXRG, ARAF, PRKACA, PPP5C, ARF1, SCN2A, ARF6 |
| 18 | 3.333 | 4 | 5 | PRKAB1, PRKAB2, PFKFB4, PIM1 |
| 19 | 3.333 | 4 | 5 | CPA1, AMY1A, AMY2B, CTRB1 |
| 20 | 3.059 | 18 | 26 | AKR1C2, ACVR1B, ACVR1, NCOA1, RDH5, ABAT, MED1, PCCB, ACSS1, FABP6, RDH11, NR0B1, RLBP1, ABCB11, AMHR2, ABCC4, RORA, SULT2A1 |
| 21 | 3 | 3 | 3 | ATP5A1, FXN, AFG3L2 |
| 22 | 3 | 3 | 3 | ACSL4, ACACB, ACSL3 |
| 23 | 3 | 3 | 3 | PYCR2, PYCRL, P4HA2 |
| 24 | 3 | 3 | 3 | SLC6A14, SLC7A8, SLC1A4 |
| 25 | 3 | 3 | 3 | OAZ3, THNSL1, OAZ2 |
| 26 | 3 | 3 | 3 | CPB1, PRSS1, AMY2A |
| 27 | 3 | 3 | 3 | PPIH, SRSF6, LSM6 |
FIGURE 5Bubble chart of biological processes in cluster 1 (X-axis stand for fold enrichment).
FIGURE 6The results of ClueGO.
FIGURE 7ZBDHD-orchitis PPI Network (Red diamond stand for signaling pathway. Pink circles stand for ZBDHD target, Blue circles stand for orchitis targets, purple circles stand for ZBDHD-orchitis target).
FIGURE 8Bubble chart of signaling pathway (X-axis stand for fold enrichment).
FIGURE 9Comparison of rat sperm quality and sperm motility parameters. (A): normal group; (B): model group; (C):ZBDHD group; D:positive control group. Compared with normal group ##p < 0.01; compared with model group △p < 0.05, △△p < 0.01).
FIGURE 10The AI of spermatogenic cells. (A): normal group; (B): model group; (C): ZBDHD group; (D):positive control group. Compared with normal group ##p < 0.01; compared with model group, △△p < 0.01).
FIGURE 11The Apoptosis of rat spermatogenic cells [TUNEL × 400. (A): normal group; (B): model group; (C): ZBDHD group; (D): positive control group].
FIGURE 12The ultrastructure of rat spermatogenic cell mitochondria [× 12,000 (A): normal group; (B): model group; (C): ZBDHD group; (D): positive control group].
FIGURE 13Rat spermatogenic cell MMP. (A): normal group; (B): model group; (C): ZBDHD group; (D): positive control group. Compared with normal group ##p < 0.01; compared with model group, △△p < 0.01.
FIGURE 14Expression of MRPS22 mRNA and proteins. (A): MRPS22 mRNA; (B): MRPS22 protein. A: normal group; B: model group; C: ZBDHD group; D: positive control group. Compared with normal group ##p < 0.01; compared with model group, △△p < 0.01.
FIGURE 15Expression of MRPS22 proteins. (A): normal group; (B): model group; (C): ZBDHD group; (D): positive control group.
Precision and accuracy (n = 6).
| Standard | Concentration (mg/l) | Within-day | Inter-day | ||||
|---|---|---|---|---|---|---|---|
| Measured value (mg/l) | RSD (%) | Accuracy (%) | Measured value (mg/l) | RSD (%) | Accuracy (%) | ||
| ATP | 20 | 19.70 | 1.16 | 98.50 | 19.55 | 2.66 | 97.75 |
| 50 | 49.25 | 1.36 | 98.50 | 49.20 | 1.86 | 98.40 | |
| 100 | 99.45 | 0.97 | 99.45 | 99.00 | 1.48 | 99.00 | |
| ADP | 20 | 19.77 | 2.14 | 98.83 | 19.73 | 2.02 | 98.67 |
| 50 | 49.52 | 1.29 | 99.03 | 49.37 | 2.06 | 98.73 | |
| 100 | 98.95 | 1.42 | 98.95 | 98.55 | 1.27 | 98.55 | |
| AMP | 20 | 19.43 | 2.53 | 97.17 | 19.68 | 1.99 | 98.42 |
| 50 | 49.22 | 2.03 | 98.43 | 48.78 | 2.06 | 97.57 | |
| 100 | 99.18 | 1.09 | 99.18 | 98.03 | 1.82 | 98.03 | |
Recovery rate experiment results (n = 2).
| Analyte | Original amount (ug) | Adding amount (ug) | Measured amount (ug) | Recovery rate (%) | RSD (%) |
|---|---|---|---|---|---|
| ATP | 71.42 | 20 | 89.89 | 98.33 | 2.38 |
| 40 | 1 1 0.16 | 98.86 | 2.41 | ||
| ADP | 60.30 | 80 | 1 50.12 | 99.14 | 0.24 |
| 20 | 80.99 | 100.85 | 1.96 | ||
| 40 | 98.28 | 97.98 | 2.31 | ||
| AMP | 53.84 | 80 | 142.19 | 101.35 | 1.95 |
| 20 | 73.96 | 100.16 | 1.54 | ||
| 40 | 92.78 | 98.87 | 1.68 | ||
| 80 | 1 33.06 | 99.41 | 3.09 |
Stability experiment and repeatability experiment RSD (%) (n = 5).
| Standard | Stability | Repeatability |
|---|---|---|
| ATP | 3 .60 | 2 .80 |
| ADP | 3 .49 | 1 .38 |
| AMP | 3 .36 | 2 .24 |