Literature DB >> 34038674

Methodological considerations for measuring biofluid-based microRNA biomarkers.

Brian N Chorley1, Elnaz Atabakhsh2, Graeme Doran2, Jean-Charles Gautier3, Heidrun Ellinger-Ziegelbauer4, David Jackson5, Tatiana Sharapova6, Peter S T Yuen7, Rachel J Church8, Philippe Couttet9, Roland Froetschl10, James McDuffie11, Victor Martinez12, Parimal Pande13, Lauren Peel14, Conor Rafferty2, Frank J Simutis15, Alison H Harrill16.   

Abstract

MicroRNAs (miRNAs) are small non-coding RNA that regulate the expression of messenger RNA and are implicated in almost all cellular processes. Importantly, miRNAs can be released extracellularly and are stable in these matrices where they may serve as indicators of organ or cell-specific toxicity, disease, and biological status. There has thus been great enthusiasm for developing miRNAs as biomarkers of adverse outcomes for scientific, regulatory, and clinical purposes. Despite advances in measurement capabilities for miRNAs, miRNAs are still not routinely employed as noninvasive biomarkers. This is in part due to the lack of standard approaches for sample preparation and miRNA measurement and uncertainty in their biological interpretation. Members of the microRNA Biomarkers Workgroup within the Health and Environmental Sciences Institute's (HESI) Committee on Emerging Systems Toxicology for the Assessment of Risk (eSTAR) are a consortium of private- and public-sector scientists dedicated to developing miRNAs as applied biomarkers. Here, we explore major impediments to routine acceptance and use of miRNA biomarkers and case examples of successes and deficiencies in development. Finally, we provide insight on miRNA measurement, collection, and analysis tools to provide solid footing for addressing knowledge gaps toward routine biomarker use.

Entities:  

Keywords:  MicroRNAs; biofluids; biomarkers; clinical; qualification; regulation; review; safety assessment

Mesh:

Substances:

Year:  2021        PMID: 34038674      PMCID: PMC8577439          DOI: 10.1080/10408444.2021.1907530

Source DB:  PubMed          Journal:  Crit Rev Toxicol        ISSN: 1040-8444            Impact factor:   6.184


  188 in total

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Authors:  Eli Eisenberg; Erez Y Levanon
Journal:  Trends Genet       Date:  2003-07       Impact factor: 11.639

2.  Influence of the confounding factors age and sex on microRNA profiles from peripheral blood.

Authors:  Benjamin Meder; Christina Backes; Jan Haas; Petra Leidinger; Cord Stähler; Thomas Großmann; Britta Vogel; Karen Frese; Evangelos Giannitsis; Hugo A Katus; Eckart Meese; Andreas Keller
Journal:  Clin Chem       Date:  2014-06-30       Impact factor: 8.327

Review 3.  Extracellular miRNAs: From Biomarkers to Mediators of Physiology and Disease.

Authors:  Marcelo A Mori; Raissa G Ludwig; Ruben Garcia-Martin; Bruna B Brandão; C Ronald Kahn
Journal:  Cell Metab       Date:  2019-08-22       Impact factor: 27.287

4.  Antitumor effect of dendritic cells transfected with prostate-specific membrane antigen recombinant adenovirus on prostate cancer: An in vitro study.

Authors:  Fan-Dong Meng; Shuai Wang; You-Hong Jiang; Cheng-Guang Sui
Journal:  Mol Med Rep       Date:  2016-01-11       Impact factor: 2.952

5.  Hepatic and serum levels of miR-122 after chronic HCV-induced fibrosis.

Authors:  Jonel Trebicka; Evrim Anadol; Natalia Elfimova; Ingo Strack; Michael Roggendorf; Sergei Viazov; Inga Wedemeyer; Uta Drebber; Jürgen Rockstroh; Tilman Sauerbruch; Hans-Peter Dienes; Margarete Odenthal
Journal:  J Hepatol       Date:  2012-10-22       Impact factor: 25.083

6.  Towards a new standardized method for circulating miRNAs profiling in clinical studies: Interest of the exogenous normalization to improve miRNA signature accuracy.

Authors:  Nicolas Vigneron; Matthieu Meryet-Figuière; Audrey Guttin; Jean-Paul Issartel; Bernard Lambert; Mélanie Briand; Marie-Hélène Louis; Mégane Vernon; Pierre Lebailly; Yannick Lecluse; Florence Joly; Sophie Krieger; Stéphanie Lheureux; Bénédicte Clarisse; Alexandra Leconte; Pascal Gauduchon; Laurent Poulain; Christophe Denoyelle
Journal:  Mol Oncol       Date:  2016-04-02       Impact factor: 6.603

7.  Clinical application of a microfluidic chip for immunocapture and quantification of circulating exosomes to assist breast cancer diagnosis and molecular classification.

Authors:  Shimeng Fang; Hongzhu Tian; Xiancheng Li; Dong Jin; Xiaojie Li; Jing Kong; Chun Yang; Xuesong Yang; Yao Lu; Yong Luo; Bingcheng Lin; Weidong Niu; Tingjiao Liu
Journal:  PLoS One       Date:  2017-04-03       Impact factor: 3.240

8.  Urinary miRNA Biomarkers of Drug-Induced Kidney Injury and Their Site Specificity Within the Nephron.

Authors:  Brian N Chorley; Heidrun Ellinger-Ziegelbauer; Michael Tackett; Frank J Simutis; Alison H Harrill; James McDuffie; Elnaz Atabakhsh; Rounak Nassirpour; Laurence O Whiteley; Jean-François Léonard; Gleta K Carswell; Ernie Harpur; Connie L Chen; Jean-Charles Gautier
Journal:  Toxicol Sci       Date:  2021-02-26       Impact factor: 4.849

9.  Human plasma and serum extracellular small RNA reference profiles and their clinical utility.

Authors:  Klaas E A Max; Karl Bertram; Kemal Marc Akat; Kimberly A Bogardus; Jenny Li; Pavel Morozov; Iddo Z Ben-Dov; Xin Li; Zachary R Weiss; Azadeh Azizian; Anuoluwapo Sopeyin; Thomas G Diacovo; Catherine Adamidi; Zev Williams; Thomas Tuschl
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-18       Impact factor: 11.205

Review 10.  TGx-DDI, a Transcriptomic Biomarker for Genotoxicity Hazard Assessment of Pharmaceuticals and Environmental Chemicals.

Authors:  Heng-Hong Li; Carole L Yauk; Renxiang Chen; Daniel R Hyduke; Andrew Williams; Roland Frötschl; Heidrun Ellinger-Ziegelbauer; Syril Pettit; Jiri Aubrecht; Albert J Fornace
Journal:  Front Big Data       Date:  2019-10-08
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  1 in total

Review 1.  Nucleic acid biomarkers to assess graft injury after liver transplantation.

Authors:  Elissa Bardhi; Jennifer McDaniels; Thomas Rousselle; Daniel G Maluf; Valeria R Mas
Journal:  JHEP Rep       Date:  2022-01-26
  1 in total

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