Literature DB >> 34038548

Estimage: a webserver hub for the computation of methylation age.

Pietro Di Lena1, Claudia Sala2, Christine Nardini3.   

Abstract

Methylage is an epigenetic marker of biological age that exploits the correlation between the methylation state of specific CG dinucleotides (CpGs) and chronological age (in years), gestational age (in weeks), cellular age (in cell cycles or as telomere length, in kilobases). Using DNA methylation data, methylage is measurable via the so called epigenetic clocks. Importantly, alterations of the correlation between methylage and age (age acceleration or deceleration) have been stably associated with pathological states and occur long before clinical signs of diseases become overt, making epigenetic clocks a potentially disruptive tool in preventive, diagnostic and also in forensic applications. Nevertheless, methylage dependency from CpGs selection, mathematical modelling, tissue specificity and age range, still makes the potential of this biomarker limited. In order to enhance model comparisons, interchange, availability, robustness and standardization, we organized a selected set of clocks within a hub webservice, EstimAge (Estimate of methylation Age, http://estimage.iac.rm.cnr.it), which intuitively and informatively enables quick identification, computation and comparison of available clocks, with the support of standard statistics.
© The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research.

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Mesh:

Year:  2021        PMID: 34038548      PMCID: PMC8262735          DOI: 10.1093/nar/gkab426

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  41 in total

1.  DNA methylation-based age prediction from saliva: High age predictability by combination of 7 CpG markers.

Authors:  Sae Rom Hong; Sang-Eun Jung; Eun Hee Lee; Kyoung-Jin Shin; Woo Ick Yang; Hwan Young Lee
Journal:  Forensic Sci Int Genet       Date:  2017-04-09       Impact factor: 4.882

Review 2.  The epigenetics of inflammaging: The contribution of age-related heterochromatin loss and locus-specific remodelling and the modulation by environmental stimuli.

Authors:  Christine Nardini; Jean-Francois Moreau; Noémie Gensous; Francesco Ravaioli; Paolo Garagnani; Maria Giulia Bacalini
Journal:  Semin Immunol       Date:  2018-11-03       Impact factor: 11.130

3.  Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.

Authors:  Martin J Aryee; Andrew E Jaffe; Hector Corrada-Bravo; Christine Ladd-Acosta; Andrew P Feinberg; Kasper D Hansen; Rafael A Irizarry
Journal:  Bioinformatics       Date:  2014-01-28       Impact factor: 6.937

4.  The MiAge Calculator: a DNA methylation-based mitotic age calculator of human tissue types.

Authors:  Ahrim Youn; Shuang Wang
Journal:  Epigenetics       Date:  2018-02-06       Impact factor: 4.528

Review 5.  The diverse roles of DNA methylation in mammalian development and disease.

Authors:  Maxim V C Greenberg; Deborah Bourc'his
Journal:  Nat Rev Mol Cell Biol       Date:  2019-08-09       Impact factor: 94.444

6.  Correlation of an epigenetic mitotic clock with cancer risk.

Authors:  Zhen Yang; Andrew Wong; Diana Kuh; Dirk S Paul; Vardhman K Rakyan; R David Leslie; Shijie C Zheng; Martin Widschwendter; Stephan Beck; Andrew E Teschendorff
Journal:  Genome Biol       Date:  2016-10-03       Impact factor: 13.583

7.  Ribosomal DNA harbors an evolutionarily conserved clock of biological aging.

Authors:  Meng Wang; Bernardo Lemos
Journal:  Genome Res       Date:  2019-02-14       Impact factor: 9.043

8.  DNA methylation-based estimator of telomere length.

Authors:  Ake T Lu; Anne Seeboth; Pei-Chien Tsai; Dianjianyi Sun; Austin Quach; Alex P Reiner; Charles Kooperberg; Luigi Ferrucci; Lifang Hou; Andrea A Baccarelli; Yun Li; Sarah E Harris; Janie Corley; Adele Taylor; Ian J Deary; James D Stewart; Eric A Whitsel; Themistocles L Assimes; Wei Chen; Shengxu Li; Massimo Mangino; Jordana T Bell; James G Wilson; Abraham Aviv; Riccardo E Marioni; Kenneth Raj; Steve Horvath
Journal:  Aging (Albany NY)       Date:  2019-08-18       Impact factor: 5.682

9.  A multi-tissue full lifespan epigenetic clock for mice.

Authors:  Michael J Thompson; Steve Horvath; Karolina Chwiałkowska; Liudmilla Rubbi; Aldons J Lusis; Richard C Davis; Anuj Srivastava; Ron Korstanje; Gary A Churchill; Matteo Pellegrini
Journal:  Aging (Albany NY)       Date:  2018-10-21       Impact factor: 5.682

10.  DNA methylation GrimAge strongly predicts lifespan and healthspan.

Authors:  Ake T Lu; Austin Quach; James G Wilson; Alex P Reiner; Abraham Aviv; Kenneth Raj; Lifang Hou; Andrea A Baccarelli; Yun Li; James D Stewart; Eric A Whitsel; Themistocles L Assimes; Luigi Ferrucci; Steve Horvath
Journal:  Aging (Albany NY)       Date:  2019-01-21       Impact factor: 5.682

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  1 in total

1.  Novel Epigenetic Clock Biomarkers of Age-Related Macular Degeneration.

Authors:  Saurav Mallik; Fran Grodstein; David A Bennett; Demetrios G Vavvas; Bernardo Lemos
Journal:  Front Med (Lausanne)       Date:  2022-06-16
  1 in total

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