Literature DB >> 34036470

Modeling the structural and reactivity properties of hydrazono methyl-4H-chromen-4-one derivatives-wavefunction-dependent properties, molecular docking, and dynamics simulation studies.

Y Sheena Mary1, Y Shyma Mary2, K S Resmi3, S Sarala4, Rohitash Yadav5, Ismail Celik6.   

Abstract

This study explains the vibration and interaction of three pharmaceutically active hydrazine derivatives, (E)-3-((2-(2,5-difluorophenyl)hydrazono)methyl)-4H-chromen-4-one (DFH), (E)-3-((2-(4-(trifluoromethyl)phenyl)hydrazono)methyl)-4H-chromen-4-one (TMH), and (E)-3-((2-(3,5-bis(trifluoromethyl)phenyl)hydrazono)methyl)-4H-chromen-4-one (BPH) using theoretical approach. The trend in chemical reactivity and stability of the studied compounds was observed to show increasing stability and decreasing reactivity and this was obtained from orbital energies. The effect of bromine and chlorine atoms, instead of fluorine atoms, is also noted. Surface analysis on the covalent bond was attained by ELF and LOL analysis. Biological activities were predicted using molecular docking studies. Docking results were analyzed with standard drugs, 5-fluorouracil/piperine. Antitumor activity of hydrazine derivatives was found to be higher than reference ones. Molecular dynamics (MD) simulation was performed for 100 ns to validate the stability behavior of hydrazine derivatives with the dual specificity threonine tyrosine kinase (TTK) protein. RMSD, RMSF, Rg, SASA, and intermolecular analysis of DFH, TMH, and BPH with threonine tyrosine kinase forms stable ligand-protein interactions. The molecular and predictive biological properties of three pharmaceutically active hydrazine derivatives which can be helpful to researchers in future experimental validation through in vitro and in vivo studies.

Entities:  

Keywords:  DFT; Hydrazine; MEP; Molecular docking; NBO

Year:  2021        PMID: 34036470     DOI: 10.1007/s00894-021-04800-6

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  19 in total

1.  Multiwfn: a multifunctional wavefunction analyzer.

Authors:  Tian Lu; Feiwu Chen
Journal:  J Comput Chem       Date:  2011-12-08       Impact factor: 3.376

2.  Novel hydrazine derivatives as selective DPP-IV inhibitors: findings from virtual screening and validation through molecular dynamics simulations.

Authors:  Omprakash Tanwar; Girdhar Singh Deora; Lalima Tanwar; Gautam Kumar; Sridhara Janardhan; Mumtaz Alam; Mymoona Akhter
Journal:  J Mol Model       Date:  2014-04-01       Impact factor: 1.810

Review 3.  Chromones: A Promising Ring System for New Anti-inflammatory Drugs.

Authors:  Carlos F M Silva; Diana C G A Pinto; Artur M S Silva
Journal:  ChemMedChem       Date:  2016-09-15       Impact factor: 3.466

4.  SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling.

Authors:  N Guex; M C Peitsch
Journal:  Electrophoresis       Date:  1997-12       Impact factor: 3.535

5.  Understanding microscopic binding of macrophage migration inhibitory factor with phenolic hydrazones by molecular docking, molecular dynamics simulations and free energy calculations.

Authors:  Lei Xu; Youyong Li; Lin Li; Shunye Zhou; Tingjun Hou
Journal:  Mol Biosyst       Date:  2012-06-28

Review 6.  Chromone as a Privileged Scaffold in Drug Discovery: Recent Advances.

Authors:  Joana Reis; Alexandra Gaspar; Nuno Milhazes; Fernanda Borges
Journal:  J Med Chem       Date:  2017-06-13       Impact factor: 7.446

7.  Synthesis, molecular characterization, and biological activity of novel synthetic derivatives of chromen-4-one in human cancer cells.

Authors:  Vivek Barve; Fakhara Ahmed; Shreelekha Adsule; Sanjeev Banerjee; Sudhir Kulkarni; Prashant Katiyar; Christopher E Anson; Annie K Powell; Subhash Padhye; Fazlul H Sarkar
Journal:  J Med Chem       Date:  2006-06-29       Impact factor: 7.446

8.  CHARMM36 all-atom additive protein force field: validation based on comparison to NMR data.

Authors:  Jing Huang; Alexander D MacKerell
Journal:  J Comput Chem       Date:  2013-07-06       Impact factor: 3.376

Review 9.  Advances in flavonoid research since 1992.

Authors:  J B Harborne; C A Williams
Journal:  Phytochemistry       Date:  2000-11       Impact factor: 4.072

10.  Synthesis and anti-neuroinflammatory activity of lactone benzoyl hydrazine and 2-nitro-1-phenyl-1h-indole derivatives as p38α MAPK inhibitors.

Authors:  Bao Cheng; Yongsheng Lin; Ming Kuang; Sai Fang; Qiong Gu; Jun Xu; Laiyou Wang
Journal:  Chem Biol Drug Des       Date:  2015-06-01       Impact factor: 2.817

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  1 in total

1.  In silico Drug Repurposing of Anticancer Drug 5-FU and Analogues Against SARS-CoV-2 Main Protease: Molecular Docking, Molecular Dynamics Simulation, Pharmacokinetics and Chemical Reactivity Studies.

Authors:  Aristote Matondo; Washington Dendera; Bienfait Kabuyaya Isamura; Koto-Te-Nyiwa Ngbolua; Hilaire V S Mambo; Mayaliwa Muzomwe; Virima Mudogo
Journal:  Adv Appl Bioinform Chem       Date:  2022-08-15
  1 in total

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