Literature DB >> 34027588

Novel Autosegmentation Spatial Similarity Metrics Capture the Time Required to Correct Segmentations Better Than Traditional Metrics in a Thoracic Cavity Segmentation Workflow.

Kendall J Kiser1, Arko Barman2, Sonja Stieb3, Clifton D Fuller3, Luca Giancardo2.   

Abstract

Automated segmentation templates can save clinicians time compared to de novo segmentation but may still take substantial time to review and correct. It has not been thoroughly investigated which automated segmentation-corrected segmentation similarity metrics best predict clinician correction time. Bilateral thoracic cavity volumes in 329 CT scans were segmented by a UNet-inspired deep learning segmentation tool and subsequently corrected by a fourth-year medical student. Eight spatial similarity metrics were calculated between the automated and corrected segmentations and associated with correction times using Spearman's rank correlation coefficients. Nine clinical variables were also associated with metrics and correction times using Spearman's rank correlation coefficients or Mann-Whitney U tests. The added path length, false negative path length, and surface Dice similarity coefficient correlated better with correction time than traditional metrics, including the popular volumetric Dice similarity coefficient (respectively ρ = 0.69, ρ = 0.65, ρ =  - 0.48 versus ρ =  - 0.25; correlation p values < 0.001). Clinical variables poorly represented in the autosegmentation tool's training data were often associated with decreased accuracy but not necessarily with prolonged correction time. Metrics used to develop and evaluate autosegmentation tools should correlate with clinical time saved. To our knowledge, this is only the second investigation of which metrics correlate with time saved. Validation of our findings is indicated in other anatomic sites and clinical workflows. Novel spatial similarity metrics may be preferable to traditional metrics for developing and evaluating autosegmentation tools that are intended to save clinicians time.

Entities:  

Keywords:  Image segmentation; “AI artificial intelligence” [MeSH]; “Clinical informatics” [MeSH]; “Computer-assisted image analysis” [MeSH]; “Medical imaging” [MeSH]

Year:  2021        PMID: 34027588     DOI: 10.1007/s10278-021-00460-3

Source DB:  PubMed          Journal:  J Digit Imaging        ISSN: 0897-1889            Impact factor:   4.056


  56 in total

1.  Automated Identification of Lesion Activity in Neovascular Age-Related Macular Degeneration.

Authors:  Usha Chakravarthy; Dafna Goldenberg; Graham Young; Moshe Havilio; Omer Rafaeli; Gidi Benyamini; Anat Loewenstein
Journal:  Ophthalmology       Date:  2016-05-17       Impact factor: 12.079

Review 2.  CT image segmentation methods for bone used in medical additive manufacturing.

Authors:  Maureen van Eijnatten; Roelof van Dijk; Johannes Dobbe; Geert Streekstra; Juha Koivisto; Jan Wolff
Journal:  Med Eng Phys       Date:  2017-10-31       Impact factor: 2.242

3.  Fully automatic catheter segmentation in MRI with 3D convolutional neural networks: application to MRI-guided gynecologic brachytherapy.

Authors:  Paolo Zaffino; Guillaume Pernelle; Andre Mastmeyer; Alireza Mehrtash; Hongtao Zhang; Ron Kikinis; Tina Kapur; Maria Francesca Spadea
Journal:  Phys Med Biol       Date:  2019-08-14       Impact factor: 3.609

4.  Machine Learning-Enabled Automated Determination of Acute Ischemic Core From Computed Tomography Angiography.

Authors:  Sunil A Sheth; Victor Lopez-Rivera; Arko Barman; James C Grotta; Albert J Yoo; Songmi Lee; Mehmet E Inam; Sean I Savitz; Luca Giancardo
Journal:  Stroke       Date:  2019-09-24       Impact factor: 7.914

5.  Fully automatic segmentation of glottis and vocal folds in endoscopic laryngeal high-speed videos using a deep Convolutional LSTM Network.

Authors:  Mona Kirstin Fehling; Fabian Grosch; Maria Elke Schuster; Bernhard Schick; Jörg Lohscheller
Journal:  PLoS One       Date:  2020-02-10       Impact factor: 3.240

6.  Toward Improving Safety in Neurosurgery with an Active Handheld Instrument.

Authors:  Sara Moccia; Simone Foti; Arpita Routray; Francesca Prudente; Alessandro Perin; Raymond F Sekula; Leonardo S Mattos; Jeffrey R Balzer; Wendy Fellows-Mayle; Elena De Momi; Cameron N Riviere
Journal:  Ann Biomed Eng       Date:  2018-07-16       Impact factor: 3.934

7.  The Image Biomarker Standardization Initiative: Standardized Quantitative Radiomics for High-Throughput Image-based Phenotyping.

Authors:  Alex Zwanenburg; Martin Vallières; Mahmoud A Abdalah; Hugo J W L Aerts; Vincent Andrearczyk; Aditya Apte; Saeed Ashrafinia; Spyridon Bakas; Roelof J Beukinga; Ronald Boellaard; Marta Bogowicz; Luca Boldrini; Irène Buvat; Gary J R Cook; Christos Davatzikos; Adrien Depeursinge; Marie-Charlotte Desseroit; Nicola Dinapoli; Cuong Viet Dinh; Sebastian Echegaray; Issam El Naqa; Andriy Y Fedorov; Roberto Gatta; Robert J Gillies; Vicky Goh; Michael Götz; Matthias Guckenberger; Sung Min Ha; Mathieu Hatt; Fabian Isensee; Philippe Lambin; Stefan Leger; Ralph T H Leijenaar; Jacopo Lenkowicz; Fiona Lippert; Are Losnegård; Klaus H Maier-Hein; Olivier Morin; Henning Müller; Sandy Napel; Christophe Nioche; Fanny Orlhac; Sarthak Pati; Elisabeth A G Pfaehler; Arman Rahmim; Arvind U K Rao; Jonas Scherer; Muhammad Musib Siddique; Nanna M Sijtsema; Jairo Socarras Fernandez; Emiliano Spezi; Roel J H M Steenbakkers; Stephanie Tanadini-Lang; Daniela Thorwarth; Esther G C Troost; Taman Upadhaya; Vincenzo Valentini; Lisanne V van Dijk; Joost van Griethuysen; Floris H P van Velden; Philip Whybra; Christian Richter; Steffen Löck
Journal:  Radiology       Date:  2020-03-10       Impact factor: 29.146

8.  Automated delineation of stroke lesions using brain CT images.

Authors:  Céline R Gillebert; Glyn W Humphreys; Dante Mantini
Journal:  Neuroimage Clin       Date:  2014-03-21       Impact factor: 4.881

9.  Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach.

Authors:  Hugo J W L Aerts; Emmanuel Rios Velazquez; Ralph T H Leijenaar; Chintan Parmar; Patrick Grossmann; Sara Carvalho; Sara Cavalho; Johan Bussink; René Monshouwer; Benjamin Haibe-Kains; Derek Rietveld; Frank Hoebers; Michelle M Rietbergen; C René Leemans; Andre Dekker; John Quackenbush; Robert J Gillies; Philippe Lambin
Journal:  Nat Commun       Date:  2014-06-03       Impact factor: 14.919

10.  Longitudinal Connectomes as a Candidate Progression Marker for Prodromal Parkinson's Disease.

Authors:  Óscar Peña-Nogales; Timothy M Ellmore; Rodrigo de Luis-García; Jessika Suescun; Mya C Schiess; Luca Giancardo
Journal:  Front Neurosci       Date:  2019-01-09       Impact factor: 4.677

View more
  4 in total

1.  General and custom deep learning autosegmentation models for organs in head and neck, abdomen, and male pelvis.

Authors:  Asma Amjad; Jiaofeng Xu; Dan Thill; Colleen Lawton; William Hall; Musaddiq J Awan; Monica Shukla; Beth A Erickson; X Allen Li
Journal:  Med Phys       Date:  2022-02-07       Impact factor: 4.071

2.  Head and Neck Cancer Primary Tumor Auto Segmentation Using Model Ensembling of Deep Learning in PET/CT Images.

Authors:  Mohamed A Naser; Kareem A Wahid; Lisanne V van Dijk; Renjie He; Moamen Abobakr Abdelaal; Cem Dede; Abdallah S R Mohamed; Clifton D Fuller
Journal:  Head Neck Tumor Segm Chall (2021)       Date:  2022-03-13

3.  Clinical implementation of deep learning contour autosegmentation for prostate radiotherapy.

Authors:  Elaine Cha; Sharif Elguindi; Ifeanyirochukwu Onochie; Daniel Gorovets; Joseph O Deasy; Michael Zelefsky; Erin F Gillespie
Journal:  Radiother Oncol       Date:  2021-03-03       Impact factor: 6.901

4.  Quantification of pulmonary involvement in COVID-19 pneumonia by means of a cascade of two U-nets: training and assessment on multiple datasets using different annotation criteria.

Authors:  Francesca Lizzi; Abramo Agosti; Francesca Brero; Raffaella Fiamma Cabini; Maria Evelina Fantacci; Silvia Figini; Alessandro Lascialfari; Francesco Laruina; Piernicola Oliva; Stefano Piffer; Ian Postuma; Lisa Rinaldi; Cinzia Talamonti; Alessandra Retico
Journal:  Int J Comput Assist Radiol Surg       Date:  2021-10-26       Impact factor: 2.924

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.