| Literature DB >> 34026605 |
ZhiYuan Zhang1,2,3, LiJun Shen1,2,3, Yan Wang1,2,3, Jiazhou Wang1,2,3, Hui Zhang1,2,3, Fan Xia1,2,3, JueFeng Wan1,2,3, Zhen Zhang1,2,3.
Abstract
BACKGROUND ANDEntities:
Keywords: KRAS; local advanced rectal cancer; magnetic resonance imaging; prediction; radiomic
Year: 2021 PMID: 34026605 PMCID: PMC8138318 DOI: 10.3389/fonc.2021.614052
Source DB: PubMed Journal: Front Oncol ISSN: 2234-943X Impact factor: 6.244
Figure 1Flow chart of the study.
Demographic and clinical characteristics of the KRAS-mut and KRAS-wild populations.
| Overall |
|
|
| |
|---|---|---|---|---|
| Number | 83 | 42 | 41 | |
| Sex (%) | 0.445 | |||
| female | 32 (38.6) | 14 (33.3) | 18 (43.9) | |
| male | 51 (61.4) | 28 (66.7) | 23 (56.1) | |
| Age (mean (SD)) | 1 | |||
| 55.95 (10.90) | 55.95 (10.06) | 55.95 (11.83) | ||
| Distance to anus | 0.477 | |||
| 4.57 (1.96) | 4.41 (2.04) | 4.00[3.00-5.00] | ||
| cT stage (%) | 0.517 | |||
| cT1 | 1 (1.2) | 0 (0.0) | 1 (2.4) | |
| cT2 | 4 (4.8) | 3 (7.1) | 1 (2.4) | |
| cT3 | 60 (72.3) | 31 (73.8) | 29 (70.7) | |
| cT4 | 18 (21.7) | 8 (19.0) | 10 (24.4) | |
| cN stage (%) | 0.31 | |||
| cN0 | 9 (10.8) | 3 (7.1) | 6 (14.6) | |
| cN1 | 23 (27.7) | 10 (23.8) | 13 (31.7) | |
| cN2 | 51 (61.4) | 29 (69.0) | 22 (53.7) | |
| C stage (%) | 0.111 | |||
| I | 5 (6.0) | 3 (7.1) | 2 (4.9) | |
| II | 4 (4.8) | 0 (0.0) | 4 (9.8) | |
| III | 74 (89.2) | 39 (92.9) | 35 (85.4) | |
| MRF (%) | 0.723 | |||
| negative | 34 (41.0) | 18 (42.9) | 16 (39.0) | |
| positive | 35 (42.2) | 16 (38.1) | 19 (46.3) | |
| unknown | 14 (16.9) | 8 (19.0) | 6 (14.6) | |
| EMVI (%) | 0.611 | |||
| negative | 32 (38.6) | 18 (42.9) | 14 (34.1) | |
| positive | 38 (45.8) | 17 (40.5) | 21 (51.2) | |
| unknown | 13 (15.7) | 7 (16.7) | 6 (14.6) | |
|
| <0.001 | |||
| wild type | 42 (50.6) | 42 (100.0) | 0 (0.0) | |
| mutant | 41 (49.4) | 0 (0.0) | 41 (100.0) | |
|
| 0.485 | |||
| wild type | 81 (97.6) | 40 (95.2) | 41 (100.0) | |
| mutant | 2 (2.4) | 2 (4.8) | 0 (0.0) | |
|
| 0.485 | |||
| wild type | 81 (97.6) | 40 (95.2) | 41 (100.0) | |
| mutant | 2 (2.4) | 2 (4.8) | 0 (0.0) | |
Patient treatments and pathological characteristics.
| Overall |
|
|
| |
|---|---|---|---|---|
| Watch and wait (W&W) (%) | 0.019 | |||
| non-W&W | 76 (91.6) | 35 (83.3) | 41 (100.0) | |
| W&W | 7 (8.4) | 7 (16.7) | 0 (0.0) | |
| Neoadjuvant chemoradiation therapy (NCRT) (%) | 0.41 | |||
| non-NCRT | 7 (8.4) | 2 (4.8) | 5 (12.2) | |
| NCRT | 76 (91.6) | 40 (95.2) | 36 (87.8) | |
| Surgery type (%) | 0.024 | |||
| APR | 27 (32.5) | 10 (23.8) | 17 (41.5) | |
| palliative colon stoma | 1 (1.2) | 0 (0.0) | 1 (2.4) | |
| Hartmann | 7 (8.4) | 5 (11.9) | 2 (4.9) | |
| LAR | 35 (42.2) | 15 (35.7) | 20 (48.8) | |
| trans-anal surgery | 1 (1.2) | 1 (2.4) | 0 (0.0) | |
| W&W | 7 (8.4) | 7 (16.7) | 0 (0.0) | |
| no surgery | 5 (6.0) | 4 (9.5) | 1 (2.4) | |
| Tumor type (%) | 0.485 | |||
| adenocarcinoma | 81 (97.6) | 40 (95.2) | 41 (100.0) | |
| mucinous adenocarcinoma | 2 (2.4) | 2 (4.8) | 0 (0.0) | |
| Differentiation (%) | 0.015 | |||
| moderate | 40 (48.2) | 21 (50.0) | 19 (46.3) | |
| poor | 15 (18.1) | 4 (9.5) | 11 (26.8) | |
| unknown | 21 (25.3) | 10 (23.8) | 11 (26.8) | |
| W&W | 7 (8.4) | 7 (16.7) | 0 (0.0) | |
| ypT stage (%) | 0.03 | |||
| ypT0 | 7 (8.4) | 1 (2.4) | 6 (14.6) | |
| ypT1 | 1 (1.2) | 0 (0.0) | 1 (2.4) | |
| ypT2 | 12 (14.5) | 7 (16.7) | 5 (12.2) | |
| ypT3 | 47 (56.6) | 21 (50.0) | 26 (63.4) | |
| ypT4 | 1 (1.2) | 1 (2.4) | 0 (0.0) | |
| unknown | 8 (9.6) | 5 (11.9) | 3 (7.3) | |
| W&W | 7 (8.4) | 7 (16.7) | 0 (0.0) | |
| ypN stage (%) | 0.025 | |||
| ypN0 | 33 (39.8) | 12 (28.6) | 21 (51.2) | |
| ypN1 | 26 (31.3) | 12 (28.6) | 14 (34.1) | |
| ypN2 | 8 (9.6) | 5 (11.9) | 3 (7.3) | |
| unknown | 9 (10.8) | 6 (14.3) | 3 (7.3) | |
| W&W | 7 (8.4) | 7 (16.7) | 0 (0.0) | |
| ypTNM stage (%) | 0.018 | |||
| yp0 | 7 (8.4) | 1 (2.4) | 6 (14.6) | |
| ypI | 4 (4.8) | 1 (2.4) | 3 (7.3) | |
| ypII | 21 (25.3) | 9 (21.4) | 12 (29.3) | |
| ypIII | 34 (41.0) | 17 (40.5) | 17 (41.5) | |
| unknown | 10 (12.0) | 7 (16.7) | 3 (7.3) | |
| W&W | 7 (8.4) | 7 (16.7) | 0 (0.0) | |
Radiomics feature.
| Feature | Coefficient |
|---|---|
| Intercept | -1.81132414 |
| X.LL_scaled_std | 0.04361241 |
Figure 2(A) Text features were selected by the LASSO regression model. The performance of the radiomics signature was assessed by the ROC curve and C-index. Tuning parameter (λ) selection used ten-fold cross-validation via the minimum criteria. The optimal value was calculated by the minimum criteria and the 1-standard error of the minimum criteria (the 1-SE criteria). A λ of 0.1782 with log(λ) - 1.75562 was chosen. (B) A LASSO coefficient profile plot was produced against the log(λ) sequence. In addition, one radiomics feature was selected.
Characteristics of patients in the training set and validation set.
| training set (n=59) | validation set (n=24) | |||||
|---|---|---|---|---|---|---|
|
|
|
|
|
|
| |
| Number | 26 | 33 | 16 | 8 | ||
| Sex (%) | 0.784 | 0.874 | ||||
| female | 10 (38.5) | 15 (45.5) | 4 (25.0) | 3 (37.5) | ||
| male | 16 (61.5) | 18 (54.5) | 12 (75.0) | 5 (62.5) | ||
| Age (mean (SD)) | 56.08 (10.19) | 56.24 (11.61) | 0.954 | 55.75 (10.16) | 54.75 (13.47) | 0.84 |
| Distance to anus | 4.40 (2.25) | 4.60 (1.96) | 0.726 | 4.43 (1.65) | 4.50 [4.00,6.25] | 0.313 |
| cT stage (%) | 0.801 | 0.105 | ||||
| cT 1 | 0 (0.0) | 1 (3.0) | 0 (0.0) | 0 (0.0) | ||
| cT 2 | 1 (3.8) | 1 (3.0) | 2 (12.5) | 0 (0.0) | ||
| cT 3 | 19 (73.1) | 25 (75.8) | 12 (75.0) | 4 (50.0) | ||
| cT 4 | 6 (23.1) | 6 (18.2) | 2 (12.5) | 4 (50.0) | ||
| cN stage (%) | 0.104 | 0.57 | ||||
| cN0 | 1 (3.8) | 6 (18.2) | 2 (12.5) | 0 (0.0) | ||
| cN1 | 6 (23.1) | 11 (33.3) | 4 (25.0) | 2 (25.0) | ||
| cN2 | 19 (73.1) | 16 (48.5) | 10 (62.5) | 6 (75.0) | ||
| c stage (%) | 0.163 | 0.794 | ||||
| I | 1 (3.8) | 2 (6.1) | 2 (12.5) | 0 (0.0) | ||
| II | 0 (0.0) | 4 (12.1) | 0 (0.0) | 0 (0.0) | ||
| III | 25 (96.2) | 27 (81.8) | 14 (87.5) | 8 (100.0) | ||
| cMRF (%) | 0.803 | 0.655 | ||||
| negative | 14 (53.8) | 15 (45.5) | 4 (25.0) | 1 (12.5) | ||
| positive | 9 (34.6) | 14 (42.4) | 7 (43.8) | 5 (62.5) | ||
| unknown | 3 (11.5) | 4 (12.1) | 5 (31.2) | 2 (25.0) | ||
| cEMVI (%) | 0.515 | 0.758 | ||||
| negative | 14 (53.8) | 13 (39.4) | 4 (25.0) | 1 (12.5) | ||
| positive | 9 (34.6) | 16 (48.5) | 8 (50.0) | 5 (62.5) | ||
| unknown | 3 (11.5) | 4 (12.1) | 4 (25.0) | 2 (25.0) | ||
| ypTNM (%) | 0.021 | 0.69 | ||||
| yp0 | 0 (0.0) | 6 (18.2) | 1 (6.2) | 0 (0.0) | ||
| ypI | 1 (3.8) | 3 (9.1) | 0 (0.0) | 0 (0.0) | ||
| ypII | 6 (23.1) | 9 (27.3) | 3 (18.8) | 3 (37.5) | ||
| ypIII | 11 (42.3) | 14 (42.4) | 6 (37.5) | 3 (37.5) | ||
| unknown | 3 (11.5) | 1 (3.0) | 4 (25.0) | 2 (25.0) | ||
| W&W | 5 (19.2) | 0 (0.0) | 2 (12.5) | 0 (0.0) | ||
|
| <0.001 | <0.001 | ||||
| wild type | 26 (100.0) | 0 (0.0) | 16 (100.0) | 0 (0.0) | ||
| mutant | 0 (0.0) | 33 (100.0) | 0 (0.0) | 8 (100.0) | ||
|
| 0.904 | 1 | ||||
| wild type | 25 (96.2) | 33 (100.0) | 15 (93.8) | 8 (100.0) | ||
| mutant | 1 (3.8) | 0 (0.0) | 1 (6.2) | 0 (0.0) | ||
|
| 0.904 | 1 | ||||
| wild type | 25 (96.2) | 33 (100.0) | 15 (93.8) | 8 (100.0) | ||
| mutant | 1 (3.8) | 0 (0.0) | 1 (6.2) | 0 (0.0) | ||
Figure 3The receiver operating characteristic (ROC) curve of the prediction of KRAS status by the radiomics model in the training set (A) and validation set (B).
Information of prediction performance.
| Training set (%) | Validation set (%) | |
|---|---|---|
| Sensitivity | 64.0 | 56.3 |
| Specificity | 85.3 | 100.0 |
| Accuracy | 76.3 | 62.5 |
| Positive Predictive Value | 76.2 | 52.9 |
| Negative Predictive Value | 76.3 | 100.0 |
| C-index | 80.1 | 70.3 |
Figure 4Distribution of prediction values in KRAS-mut and KRAS-wild patients in the training set (A) and validation set (B). The y-axis measures the calculation value of the radiomic model. The blue columns represent actual KRAS-mut patients, and the red columns represent actual KRAS-wild patients. A higher column represents a higher value calculated by the model. According to the image, KRAS-mut patients more frequently obtained higher values than KRAS-wild patients. (C, D) represented the DCA analysis for the training set and validation set.