Hossam F Abou-Shaara1, Ahmad A Al-Ghamdi2, Khalid Ali Khan3,4, Saad N Al-Kahtani5. 1. Department of Plant Protection, Faculty of Agriculture, Damanhour University, Damanhour 22516, Egypt. 2. Chair of Engineer Abdullah Ahmad Buqshan for Bee Research, Department of Plant Protection, College of Food and Agriculture Sciences, King Saud University, Riyadh 11451, Saudi Arabia. 3. Unit of Bee Research and Honey Production, Faculty of Science, King Khalid University, P.O. Box 9004, Abha 61413, Saudi Arabia. 4. Department of Biology, Faculty of Science, King Khalid University, P.O. Box 9004, Abha 61413, Saudi Arabia. 5. Arid Land Agriculture Department, College of Agricultural Sciences & Foods, King Faisal University, P.O. Box 400, Al-Ahsa 31982, Saudi Arabia.
Abstract
OBJECTIVES: This study aimed to analyze the genetic relationships between honey bee subspecies using reference specimens and recently collected specimens from different parts of the world. The purity of these specimens was discussed in light of the obtained results. METHODS: The genetic networks were constructed between 21 subspecies of honey bees, Apis mellifera L.: 9 in Africa, 7 in Europe and 5 in Asia. The analysis was performed using the mtDNA of these subspecies and the Population Analysis with Reticulate Trees software. Some subspecies were represented by more than two specimens based on the available online sequences. RESULTS AND CONCLUSIONS: The subspecies A. m. sahariensis from Africa showed unique characteristics and is genetically isolated than all other studied bee subspecies. Specimens collected from Saudi Arabia showed genetic relatedness to A. m. jemenitica, A. m. lamarckii, and some European subspecies, suggesting high degree of hybridization. The close genetic relationship between the Egyptian bees, A. m. lamarckii, and the Syrian bees, A. m. syriaca, were emphasized. The overall genetic network showed the presence of three distinct branches in relation to geographical locations. The high accurateness of the used analysis was confirmed by previous phylogenetic studies as well as the genetic relationships between hybrid bees of A. m. capensis and A. m. scutellata. The genetic networks showed the presence of bee subspecies from Africa in all branches including Europe and Asia. The study suggests the impurity of some specimens mostly due to the hybridization between subspecies. Specific recommendations for future conservation efforts of bees were presented in light of this study.
OBJECTIVES: This study aimed to analyze the genetic relationships between honey bee subspecies using reference specimens and recently collected specimens from different parts of the world. The purity of these specimens was discussed in light of the obtained results. METHODS: The genetic networks were constructed between 21 subspecies of honey bees, Apis mellifera L.: 9 in Africa, 7 in Europe and 5 in Asia. The analysis was performed using the mtDNA of these subspecies and the Population Analysis with Reticulate Trees software. Some subspecies were represented by more than two specimens based on the available online sequences. RESULTS AND CONCLUSIONS: The subspecies A. m. sahariensis from Africa showed unique characteristics and is genetically isolated than all other studied bee subspecies. Specimens collected from Saudi Arabia showed genetic relatedness to A. m. jemenitica, A. m. lamarckii, and some European subspecies, suggesting high degree of hybridization. The close genetic relationship between the Egyptian bees, A. m. lamarckii, and the Syrian bees, A. m. syriaca, were emphasized. The overall genetic network showed the presence of three distinct branches in relation to geographical locations. The high accurateness of the used analysis was confirmed by previous phylogenetic studies as well as the genetic relationships between hybrid bees of A. m. capensis and A. m. scutellata. The genetic networks showed the presence of bee subspecies from Africa in all branches including Europe and Asia. The study suggests the impurity of some specimens mostly due to the hybridization between subspecies. Specific recommendations for future conservation efforts of bees were presented in light of this study.
There is a number of honey bee, Apis mellifera L., subspecies from 20 up 33 (Ruttner, 1988, Engel, 1999, Sheppard and Meixner, 2003, Dogantzis and Zayed, 2019, Ilyasov et al., 2020). Morphometry and genetic methods are employed to discriminate between subspecies (Ruttner et al., 1978, Garnery et al., 1992, Estoup et al., 1995, Arias and Sheppard, 1996, Franck et al., 1998, Palmer et al., 2000, Meixner et al., 2013). However, the discrimination between some bee subspecies cannot be achieved by morphological characteristics (Garnery et al., 1995, Sheppard et al., 1996, Dukku, 2016). Typically, these subspecies can be divided into five lineages as A, Z, M, C, O, Y and C or Y (Ilyasov et al., 2020). Honey bee subspecies are assigned to these linages using morphometry and genetic methods; but variations of the results were observed between the two approaches. For Example, the Egyptian honey bees, A. m. lamarckii, in A lineage based on morphometry (Ruttner, 1988) but in O lineage based on mtDNA (Arias and Sheppard, 1996). Also, the Yemeni honey bees, A. m. jemenitica, in A lineage according to morphometry (Ruttner, 1988) and in Y lineage based on mtDNA (Coulibaly et al., 2019). Indeed, transition zones were detected between some subspecies (Kandemir et al., 2006a, Dukku, 2016, Alburaki et al., 2011).In fact, these subspecies are geographically distributed and adapted to specific conditions (Ruttner, 1988). For example, subspecies of Europe are well adapted to temperate conditions while those of Gulf countries and North Africa can tolerate high temperature and arid conditions (Alqarni et al., 2011, Abou-Shaara et al., 2013, Al-Ghamdi et al., 2016). The higher number of subspecies occurs in Europe (13), then Africa (11), and finally the Western Asia and the Middle East (9) (Ilyasov et al., 2020). The productivity of these subspecies is varied and can be inferred from specific morphological characteristics such as body size, wing dimensions and corbicular area (Kolmes and Sam, 1991, Mostajeran et al., 2006). So, planned hybridization between them has been done in some countries including Egypt and Saudi Arabia (Sheppard et al., 2001, Abou-Shaara et al., 2013, Kamel et al., 2003). Such hybridizations can reduce the purity of bee subspecies. The overlap between bee subspecies especially those at boundaries between countries can also increase the hybridization degree between bee subspecies (Péntek-Zakar et al., 2015). Moreover, migratory beekeeping inside the same country can cause admixture between subspecies and bee hybrids (Marghitas et al., 2008).Sequencing of mtDNA can be used in various purposes including detecting SNP markers in inbred female lines (Kim et al., 2019). Also, sequencing the mitogenome can contribute in the conservation genetic projects of honey bees (Haddad, 2016) as well as in understanding the hybridization between subspecies (Abou-Shaara and Bayoumi, 2019). The purity of honey bee subspecies has not been investigated in some countries including North Africa and Gulf countries. The available sequences from these areas is very limited and mostly from reference samples (Abou-Shaara, 2019, Abou-Shaara et al., 2021, Abou-Shaara et al., 2020, 2021). Recently, sequences of some new specimens from various countries were available online. So, this study aimed to analyze these mtDNA sequences to understand the genetic relationships between honey bee subspecies and to evaluate the purity of the analyzed specimens. The results of this study are important in conservation programs aimed to keep the characteristics of the indigenous bee subspecies.
Methods
Software and resources
The sequences of mtDNA for all honey bee subspecies used in the study were obtained from the NCBI (ncbi.nlm.nih.gov/). Also, two genetic programs (software) were used in the analysis MEGA6 (Tamura et al., 2013) and Population Analysis with Reticulate Trees software (Leigh and Bryant, 2015).
Subspecies from Africa
Nine subspecies belong to African countries were analyzed (Table 1). Some subspecies were represented by two specimens or more including A. m. capensis, A. m. intermissa, A. m. sahariensis and A. m. scutellata. Also, hybrids between A. m. scutellata × A. m. capensis were included in the analysis.
Table 1
Mitogenome data of Apis mellifera subspecies from Africa.
Subspecies
GenBank
Base pairs
Specimen
Country
Abbreviation
A. m. adansonii
MN585109.1
16466
voucher=“1284
Niger
ADA
A. m. capensis
KX870183.1
16470
–
South Africa
CAP 1
A. m. capensis
MG552694.1
16344
voucher=“ST”
South Africa
CAP 2
A. m. capensis
MG552688.1
16453
voucher=“MB”
South Africa
CAP 3
A. m. capensis
MG552696.1
16459
voucher=“WD”
South Africa
CAP 4
A. m. capensis
MG552692.1
16435
voucher=“RD”
South Africa
CAP 5
A. m. capensis
MG552691.1
16515
voucher=“PE”
South Africa
CAP 6
A. m. capensis
MG552690.1
16434
voucher=“PB”
South Africa
CAP 7
A. m. capensis
MG552687.1
16468
voucher=“LB”
South Africa
CAP 8
A. m. capensis
MG552686.1
16473
voucher=“LA”
South Africa
CAP 9
A. m. capensis
MG552685.1
16428
voucher=“GT”
South Africa
CAP 10
A. m. capensis
MG552684.1
16380
voucher=“GE”
South Africa
CAP 11
A. m. capensis
MG552683.1
16442
voucher=“CT”
South Africa
CAP 12
A. m. capensis
MG552682.1
16447
voucher=“CD”
South Africa
CAP 13
A. m. capensis
MG552681.1
16467
voucher=“BD”
South Africa
CAP 14
A. m. capensis
MG552695.1
16439
voucher=“SW”
South Africa
CAP 15
A. m. capensis
MG552693.1
16467
voucher=“SF”
South Africa
CAP 16
A. m. capensis
MG552689.1
16463
voucher=“MF”
South Africa
CAP 17
A. m. scutellata × A. m. capensis
KX943034.1
16340
–
South Africa
SCU X CAP
A. m. capensis × A. m. scutellata
MG552697.1
16456
voucher=“KL”
South Africa
CAP X SCU
A. m. intermissa
KY926883.1
16343
voucher=“1814″
Morocco
INT 1
A. m. intermissa
KM458618.1
16336
–
Algeria
INT 2
A. m. lamarckii
KY464958.1
16589
voucher=“1842″
Egypt
LAM
A. m. monticola
MF678581.1
16343
voucher=“1626″
Kenya
MONT
A. m. sahariensis
MF351881.1
16569
–
Algeria
SAH 1
A. m. sahariensis
NC_035883.1
16569
–
Algeria
SAH 2
A. m. simensis
MN585108.1
16523
voucher=“2721
Ethiopia
SIM
A. m. unicolor
MN119925.1
16373
voucher=”2520
Madagascar
UNI
A. m. scutellata
KJ601784.1
16411
Hybrid
Mexico
SCU 1
A. m. scutellata
KY614238.1
16288
voucher=“1982″
South Africa
SCU 2
A. m. scutellata
MG552698.1
16479
voucher=“BL”
South Africa
SCU 3
A. m. scutellata
MG552703.1
16339
voucher=“VR”
South Africa
SCU 4
A. m. scutellata
MG552702.1
16364
voucher=“UP”
South Africa
SCU 5
A. m. scutellata
MG552701.1
16450
voucher=“SP”
South Africa
SCU 6
A. m. scutellata
MG552700.1
16462
voucher=“PT”
South Africa
SCU 7
A. m. scutellata
MG552699.1
16454
voucher=“KR”
South Africa
SCU 8
Mitogenome data of Apis mellifera subspecies from Africa.
Subspecies from Europe
Seven subspecies from European countries were incorporated into the analysis (Table 2). Five specimens of A. m. ligustica, and eleven specimens in total were considered during the construction of the genetic network.
Table 2
Mitogenome data of Apis mellifera subspecies from Europe.
Subspecies
GenBank
Base pairs
Specimen
Country
Abbreviation
A. m. anatoliaca
MT188686.1
16256
voucher = 3377
Turkey
ANA
A. m. carnica
MN250878.1
16358
voucher = 1668
Austria
CAR
A. m. caucasica
MN714160.1
16274
–
–
CAU
A. m. iberiensis
MN585110.1
16560
voucher = 1964
Portugal
IBR
A. m. ruttneri
MN714162.1
16577
voucher = 2050
Malta
RUT
A. m. ligustica
NC_001566.1
16343
–
–
LIG 1
A. m. ligustica
MT859135.1
16467
–
–
LIC 2
A. m. ligustica
KX908209.1
16465
–
–
LIC 3
A. m. ligustica
MH341408.1
16426
voucher = CNU7294
–
LIC 4
A. m. ligustica
MH341407.1
16449
voucher = CNU7293
–
LIC 5
A. m. mellifera
KY926884.1
16343
voucher = 1410
Norway
MEL 1
Mitogenome data of Apis mellifera subspecies from Europe.
Subspecies from Asia
Five subspecies from Asian countries were used in the analysis (Table 3). Fourteen specimens of hybrid bees from Saudi Arabia were used during the analysis and considered as Apis mellifera without specifying the subspecies name.
Table 3
Mitogenome data of Apis mellifera subspecies from Asia.
Subspecies
GenBank
Base pairs
Specimen
Country
Abbreviation
A. m. jemenitica
MN714161.1
16427
voucher = 154
Yemen
JEM
A. m. meda
KY464957.1
16248
voucher = 3284
–
MED
A. m. sinisxinyuan
MN733955.1
16886
–
China
SIN
A. m. syriaca
KY926882.1
16343
voucher = 1728
Syria
SYR 1
A. m. syriaca
KP163643.1
15428
Varroa resistant
–
SYR 2
Apis mellifera
MT745914.1
16386
Arabia-j-Z-61
Saudi Arabia
ARB 1
Apis mellifera
MT745913.1
16381
Arabia-n-Z-51
Saudi Arabia
ARB 2
Apis mellifera
MT745912.1
16352
Arabia-n-Z-53
Saudi Arabia
ARB 3
Apis mellifera
MT745911.1
16384
Arabia-md-Zc-71
Saudi Arabia
ARB 4
Apis mellifera
MT745910.1
16379
Arabia-t-Z-112
Saudi Arabia
ARB 5
Apis mellifera
MT745909.1
16390
Arabia-md-Z-61
Saudi Arabia
ARB 6
Apis mellifera
MT745908.1
16394
Arabia-t-Z-41
Saudi Arabia
ARB 7
Apis mellifera
MT745907.1
16390
Arabia-T-Z-61
Saudi Arabia
ARB 8
Apis mellifera
MT745906.1
16410
Arabia-A-Z-101
Saudi Arabia
ARB 9
Apis mellifera
MT745905.1
16419
Arabia-mK-Z-53
Saudi Arabia
ARB 10
Apis mellifera
MT745904.1
16425
Arabia-mK-Z-73
Saudi Arabia
ARB 11
Apis mellifera
MT745903.1
16428
Arabia-B-Z-34
Saudi Arabia
ARB 12
Apis mellifera
MT745902.1
16443
Arabia-A-Z-111
Saudi Arabia
ARB 13
Apis mellifera
MT745901.1
16445
Arabia-mK-Z-111
Saudi Arabia
ARB 14
Apis mellifera
MT745915.1
16400
Arabia-md-Zc-17
Saudi Arabia
ARB 15
Mitogenome data of Apis mellifera subspecies from Asia.
Genetic networks
The mtDNA sequences were aligned using Multiple Sequence Comparison by Log-Expectation (Edgar, 2004) prior to the establishment of the genetic networks. Then, the genetic networks were constructed using TCS networks (Clement et al., 2002) and number of mutations between common ancestors was presented in the final constructed networks. The analysis was performed for subspecies from each geographical location individually followed by an overall network for all subspecies.
Results
Africa
The genetic network showed the clear relationships between specimens of A. m. scutellata and A. m. capensis (Fig. 1). These two subspecies occur in South Africa (Eimanifar et al., 2018) and there is hybridization between them in some areas (Eimanifar et al., 2016, Eimanifar et al., 2018). Therefore, the hybrids between these two subspecies were placed very close to the maternal source as SCU X CAP close to A. m. capensis and CAP X SCU close to A. m. scutellata. This confirms the accurateness of the network analysis based on the mtDNA. The specimen of A. m. scutellata from Mexico (abbreviated as SCU 1) was close to A. m. capensis, A. m. scutellata and their hybrid bees. This bee from Mexico was a hybrid from drones of Italian bees and queen of A. m. scutellata (Gibson and Hunt, 2016). Therefore, its mtDNA was close to A. m. scutellata. The Egyptian bees, A. m. lamarckii, were close to a specimen of A. m. intermissa (specimen 1). The sample of the Egyptian bees was a reference sample from Egypt (Eimanifar et al., 2017a) while the A. m. intermissa sample was from Morocco. The second specimen was close to A. m. scutellata and away from the first specimen of A. m. intermissa and A. m. lamarckii. This specimen was collected from Algeria (Hu et al., 2016). The genetic variations between the two specimens of A. m. intermissa can be attributed to the hybridization between bee subspecies in North Africa. Indeed, no pure A. m. lamarckii bees occur in Egypt currently due to the long period of hybridization between Carniolan and Italian bees with Egyptian bees since 1930s (Page et al., 1981, Sheppard et al., 2001, Kamel et al., 2003, Abou-Shaara, 2019).
Fig. 1
The genetic network between Apis mellifera subspecies from Africa. ADA: A. m. adansonii, CAP: A. m. capensis (specimens 1–17), INT: A. m. intermissa (specimens 1–2), LAM: A. m. lamarckii, MONT: A. m. monticola, SAH: A. m. sahariensis (specimens 1–2), SIM: A. m. simensis, UNI: A. m. unicolor, and SCU: A. m. scutellata (specimens 1–8). The number of mutations over 20 is placed between brackets.
The genetic network between Apis mellifera subspecies from Africa. ADA: A. m. adansonii, CAP: A. m. capensis (specimens 1–17), INT: A. m. intermissa (specimens 1–2), LAM: A. m. lamarckii, MONT: A. m. monticola, SAH: A. m. sahariensis (specimens 1–2), SIM: A. m. simensis, UNI: A. m. unicolor, and SCU: A. m. scutellata (specimens 1–8). The number of mutations over 20 is placed between brackets.The two specimens of A. m. sahariensis were identical to each other and placed very away than all other subspecies with high number of mutations of 4424 than A. m. monticola, A. m. intermissa and A. m. lamarckii. This specific subspecies is geographically isolated than the rest of bee subspecies of Africa (Haddad et al., 2017). This can explain the occurrence of high number of mutations in the ancestors of these bees. Two subspecies A. m. unicolor and A. m. simensis were very close to A. m. scutellata (specimen 8) while A. m. adansonii was close to A. m. scutellata (specimen 4). In a similar way, a previous study showed the close relationship between the Malagasy honey bees, A. m. unicolor, and A. m. scutellata and A. m. capensis (Boardmanet al., 2019a). Also, The Ethiopian bees A. m. simensis were close to A. m. scutellata (Boardman et al., 2020a). Additionally, A. m. adansonii showed close relationships to A. m. scutellata and A. m. capensis (Boardman et al., 2020b). This study showed the distinct of A. m. monticola than the other subspecies with some relationship with A. m. capensis, this is in line with Eimanifar et al. (2017b). This is on the contrary with Boardman et al., 2019a, Boardman et al., 2020b,b), those authors found a close relationships between A. m. simensis, A. m. adansonii and A. m. monticola. The relationships between A. m. adansonii, A. m. scutellata, A. m. monticola, and A. m. capensis were highlighted (Arias and Sheppard, 1996, Franck et al., 2001). However, the present study supports the close relationship between A. m. monticola, and A. m. capensis, and between A. m. adansonii and A. m. scutellata. The number of mutations was extremely high in case of A. m. sahariensis only and not more than 20 in most subspecies while mutation numbers over 20 are shown in Fig. 1. The extreme variations between A. m. sahariensis and subspecies of Africa encourage the assessment of the sequences of this subspecies using modern sequencing techniques.
Europe
The genetic network clearly shows that A. m. anatoliaca and A. m. caucasica are placed in the same branch (Fig. 2). Accordingly, A. m. anatoliaca was close to A. m. caucasica found in Turkey (Boardman et al., 2020c). Also, A. m. iberiensis and A. m. ruttneri were highly close to each other. The close relationship between A. m. carnica and A. m. ligustica was previously highlighted (Boardman et al., 2019b), and is confirmed in this study. All specimens of the Italian honey bees, A. m. ligustica, showed close genetic relationships except specimen 4, suggesting the impurity of this specimen. The hybridization between specimen 4 and the Carniolan bees, A. m. carnica, is expected to be the reason behind the impurity of this specimen. The European bee, A. m. mellifera, showed high variation (122 mutations) than the other subspecies. In fact, the available number of specimens for some European subspecies is low and further investigations are recommended especially at Central and Eastern parts of Europe.
Fig. 2
The genetic network between Apis mellifera subspecies from Europe. ANA: A. m. anatoliaca, CAR: A. m. carnica, CAU: A. m. caucasica, IBR: A. m. iberiensis, RUT: A. m. ruttneri, LIG: A. m. ligustica, and MEL: A. m. mellifera. The number of mutations over 20 is placed between brackets.
The genetic network between Apis mellifera subspecies from Europe. ANA: A. m. anatoliaca, CAR: A. m. carnica, CAU: A. m. caucasica, IBR: A. m. iberiensis, RUT: A. m. ruttneri, LIG: A. m. ligustica, and MEL: A. m. mellifera. The number of mutations over 20 is placed between brackets.
Asia
The specimens collected from Saudi Arabia showed close relationships with A. m. jemenitica except specimens 1 and 2 (Fig. 3). Indeed, none of the analyzed specimens from Saudi Arabia showed identical sequences with A. m. jemenitica, suggesting the high hybridization degree in these specimens. The importation of bee stocks from some countries including Egypt to Saudi Arabia has been done over a long period of time (Alqarni et al., 2011, Al-Ghamdi and Nuru, 2013, Al-Ghamdi et al., 2016); therefore, the potential hybridization between the native bees of Saudi Arabia, A. m. jemenitica, and the imported bees is highly expected. A close relationship between A. m. jemenitica and the Syrian honey bees, A. m. syriaca, was found (Boardman et al., 2020d), which is supported in this study mainly by specimen 2 of the Syrian bees. The highest number of mutations was found in A. m. sinisxinyuan (118) and A. m. meda (98). These two subspecies were separated than the other subspecies. The two specimens of the Syrian honey bees were not identical.
Fig. 3
The genetic network between Apis mellifera subspecies from Asia. JEM: A. m. jemenitica, MED: A. m. meda, SIN: A. m. sinisxinyuan, SYR: A. m. syriaca, and ARB: Apis mellifera (specimens from Saudi Arabia). The number of mutations over 20 is placed between brackets.
The genetic network between Apis mellifera subspecies from Asia. JEM: A. m. jemenitica, MED: A. m. meda, SIN: A. m. sinisxinyuan, SYR: A. m. syriaca, and ARB: Apis mellifera (specimens from Saudi Arabia). The number of mutations over 20 is placed between brackets.
All subspecies
The overall genetic network classified the subspecies into three clear branches (Fig. 4). Branch A contained subspecies from Africa plus two subspecies from outside it A. m. ruttneri and A. m. iberiensis. In a previous study, A. m. ruttneri from Malta showed a close genetic relationship to A. m. intermissa from North Africa (Sheppard et al., 1997). Also, in a previous phylogenetic analysis A. m. ruttneri and A. m. iberiensis showed a close relationship to A. m. sahariensis and A. m. intermissa (Boardman et al., 2020d, Boardman et al., 2020e). These findings are supported partially by the results of this study. In fact, A. m. intermissa has a pivotal role in the transition zones between some subspecies of Africa such as A. m. sahariensis and A. m. scutellata (Dukku, 2016, Ilyasov et al., 2020) and in Europe such as A. m. iberiensis (Ruttner, 1988). This supports the idea of being A. m. intermissa the genetic root of bee subspecies in South Europe. The Egyptian bees, A. m. lamarckii, were not included in this branch. The number of mutations between subspecies of this branch was less than 29, suggesting their close genetic relatedness. The accuracy of the analysis is highlighted by the location of A. m. scutellata (specimens 1) in the African branch and not in the European branch. In fact, this specimen is a hybrid between drone of A. m. ligustica and queen of A. m. scutellata (Gibson and Hunt, 2016); therefore, the maternal source (mtDNA) is from Africa.
Fig. 4
The genetic network between Apis mellifera subspecies from Africa, Europe, and Asia. ADA: A. m. adansonii, CAP: A. m. capensis (specimens 1–17), INT: A. m. intermissa (specimens 1–2), LAM: A. m. lamarckii, MONT: A. m. monticola, SAH: A. m. sahariensis (specimens 1–2), SIM: A. m. simensis, UNI: A. m. unicolor, and SCU: A. m. scutellata (specimens 1–8). ANA: A. m. anatoliaca, CAR: A. m. carnica, CAU: A. m. caucasica, IBR: A. m. iberiensis, RUT: A. m. ruttneri, LIG: A. m. ligustica, and MEL: A. m. mellifera. JEM: A. m. jemenitica, MED: A. m. meda, SIN: A. m. sinisxinyuan, SYR: A. m. syriaca, and ARB: Apis mellifera (specimens from Saudi Arabia). The number of mutations is placed between brackets.
The genetic network between Apis mellifera subspecies from Africa, Europe, and Asia. ADA: A. m. adansonii, CAP: A. m. capensis (specimens 1–17), INT: A. m. intermissa (specimens 1–2), LAM: A. m. lamarckii, MONT: A. m. monticola, SAH: A. m. sahariensis (specimens 1–2), SIM: A. m. simensis, UNI: A. m. unicolor, and SCU: A. m. scutellata (specimens 1–8). ANA: A. m. anatoliaca, CAR: A. m. carnica, CAU: A. m. caucasica, IBR: A. m. iberiensis, RUT: A. m. ruttneri, LIG: A. m. ligustica, and MEL: A. m. mellifera. JEM: A. m. jemenitica, MED: A. m. meda, SIN: A. m. sinisxinyuan, SYR: A. m. syriaca, and ARB: Apis mellifera (specimens from Saudi Arabia). The number of mutations is placed between brackets.
Discussion:
Branch AE contained A. m. lamarckii, A. m. jemenitica, A. m. syriaca, and all specimens from Saudi Arabia except 1, 2, 3 and 15. The number of mutations in this cluster was less than 32, suggesting the high genetic similarities between them. The close genetic relationship between the reference sample of A. m. lamarckii (the Egyptian bees) and A. m. syriaca (the Syrian bees) were confirmed in previous studies (Eimanifar et al., 2017a, Abou-Shaara, 2019, Abou-Shaara et al., 2021, Abou-Shaara et al., 2020, 2021) in accordance to the present result. Also, a close relationship between A. m. jemenitica, A. m. lamarckii and A. m. syriaca were suggested (Boardman et al., 2020f). In fact, transition zones were found between some subspecies in the near East such as A. m. meda and A. m. anatoliaca, and also A. m. syriaca and A. m. lamarckii (Franck et al., 2000, Kandemir et al., 2006a, Alburaki et al., 2011). Such transitions are highly supported by the constructed network. High similarities between A. m. lamarckii and honey bees from Syria and Turkey based on the COI-COII intergenic region were found (Kandemir et al., 2006b) as well as between A. m. lamarckii and A. m. syriaca from Lebanon (Franck et al., 2000). This supports that A. m. lamarckii may represent the genetic root of bee subspecies of the Levant. It is clear that some samples from Saudi Arabia were genetically close to A. m. jemenitica especially specimen 5, and such specimen can be further used in conservation programs of honey bees in Saudi Arabia.Branch E contained European honey bee subspecies with mutations less than 26, suggesting the close genetic relationships between these reference samples. The subspecies A. m. intermissa (specimen 1) showed genetic relationships with European subspecies with 69 mutations in the common ancestor. In other words, A. m. intermissa (specimen 1) and other European subspecies shared the same common ancestor. The highest number of mutations were recorded to specimens 1, 2, 3, and 15 from Saudi Arabia (111 mutations), A. m. mellifera and A. m. sinisxinyuan from China (113 mutations), and the two specimens of A. m. sahariensis (4253 mutations). The close relationship between A. m. mellifera and A. m. sinisxinyuan is highly supported by the phylogenetic study based on 13 protein coding genes (Yang et al., 2020). In fact, the Xinyuan honey bees, A. m. sinisxinyuan, occurs in limited areas in China (Zhao et al.2018), and have ability to adapt with temperate climates and to tolerate winter conditions (Chen et al.2016). Also, A. m. mellifera is well adapted to European conditions and can tolerate cold winter and temperate climates. This shows the similarities between these two subspecies in their behaviors. The mutations in specimens 1, 2, 3, and 15 from Saudi Arabia can be explained by their exposure to hybridization with other bee subspecies over long period. The isolation of A. m. sahariensis than all subspecies suggests its unique characteristics; however, re-assessment of its mtDNA sequences is required.
Conclusion
The genetic network showed that two subspecies from Europe (A. m. ruttneri and A. m. iberiensis) were close to subspecies from Africa than those from Europe. Also, A. m. mellifera from Europe and A. m. sinisxinyuan from China were close to each other although the geographical isolation between them. The low purity of some specimens was highlighted including samples collected from Saudi Arabia and specimen of A. m. intermissa and A. m. Syriaca. The highest number of mutations was recoded to A. m. sahariensis, suggesting its unique genetic characteristics. A. m. intermissa from Morocco, Algeria, and Tunisia should be re-assessed as the genetic root for bee subspecies from South Europe, which can help in conservation programs. Specific specimens collected from Saudi Arabia showed high genetic relationships with the endemic bees, A. m. jemenitica, and should be considered in future conservation programs. A very close genetic relationship was detected between a specimen of A. m. Syriaca and the Egyptian bees, A. m. lamarckii. The assessment of new specimens from Egypt and the Levant is highly recommended to update the genetic status of bee subspecies from these regions. In general, collecting new samples of bees and sequencing of mtDNA is highly recommended to update the current genetic relationships between subspecies as a result of hybridization.
Declaration of Competing Interest
The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.
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