Literature DB >> 34021280

REMBI: Recommended Metadata for Biological Images-enabling reuse of microscopy data in biology.

Ugis Sarkans1, Wah Chiu2, Lucy Collinson3, Michele C Darrow4, Jan Ellenberg5, David Grunwald6, Jean-Karim Hériché5, Andrii Iudin7, Gabriel G Martins8, Terry Meehan7,9, Kedar Narayan10,11, Ardan Patwardhan7, Matthew Robert Geoffrey Russell3, Helen R Saibil12, Caterina Strambio-De-Castillia13, Jason R Swedlow14, Christian Tischer15, Virginie Uhlmann7, Paul Verkade16, Mary Barlow7, Omer Bayraktar17, Ewan Birney7, Cesare Catavitello7,18, Christopher Cawthorne19, Stephan Wagner-Conrad20, Elizabeth Duke21,22, Perrine Paul-Gilloteaux23,24, Emmanuel Gustin25, Maria Harkiolaki21, Pasi Kankaanpää26,27, Thomas Lemberger28, Jo McEntyre7, Josh Moore14, Andrew W Nicholls29, Shuichi Onami30, Helen Parkinson7, Maddy Parsons31, Marina Romanchikova32, Nicholas Sofroniew33, Jim Swoger34, Nadine Utz35, Lenard M Voortman36, Frances Wong14, Peijun Zhang21,37, Gerard J Kleywegt38, Alvis Brazma39.   

Abstract

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Year:  2021        PMID: 34021280      PMCID: PMC8606015          DOI: 10.1038/s41592-021-01166-8

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


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  1 in total

1.  SSBD: a database of quantitative data of spatiotemporal dynamics of biological phenomena.

Authors:  Yukako Tohsato; Kenneth H L Ho; Koji Kyoda; Shuichi Onami
Journal:  Bioinformatics       Date:  2016-07-13       Impact factor: 6.937

  1 in total
  8 in total

1.  Towards 'end-to-end' analysis and understanding of biological timecourse data.

Authors:  Siddhartha G Jena; Alexander G Goglia; Barbara E Engelhardt
Journal:  Biochem J       Date:  2022-06-17       Impact factor: 3.766

2.  Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model.

Authors:  Mathias Hammer; Maximiliaan Huisman; Alessandro Rigano; Ulrike Boehm; James J Chambers; Nathalie Gaudreault; Alison J North; Jaime A Pimentel; Damir Sudar; Peter Bajcsy; Claire M Brown; Alexander D Corbett; Orestis Faklaris; Judith Lacoste; Alex Laude; Glyn Nelson; Roland Nitschke; Farzin Farzam; Carlas S Smith; David Grunwald; Caterina Strambio-De-Castillia
Journal:  Nat Methods       Date:  2021-12       Impact factor: 47.990

3.  WashU Epigenome Browser update 2022.

Authors:  Daofeng Li; Deepak Purushotham; Jessica K Harrison; Silas Hsu; Xiaoyu Zhuo; Changxu Fan; Shane Liu; Vincent Xu; Samuel Chen; Jason Xu; Shinyi Ouyang; Angela S Wu; Ting Wang
Journal:  Nucleic Acids Res       Date:  2022-04-12       Impact factor: 19.160

4.  The European Bioinformatics Institute (EMBL-EBI) in 2021.

Authors:  Gaia Cantelli; Alex Bateman; Cath Brooksbank; Anton I Petrov; Rahuman S Malik-Sheriff; Michele Ide-Smith; Henning Hermjakob; Paul Flicek; Rolf Apweiler; Ewan Birney; Johanna McEntyre
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 16.971

5.  Microscopy-BIDS: An Extension to the Brain Imaging Data Structure for Microscopy Data.

Authors:  Marie-Hélène Bourget; Lee Kamentsky; Satrajit S Ghosh; Giacomo Mazzamuto; Alberto Lazari; Christopher J Markiewicz; Robert Oostenveld; Guiomar Niso; Yaroslav O Halchenko; Ilona Lipp; Sylvain Takerkart; Paule-Joanne Toussaint; Ali R Khan; Gustav Nilsonne; Filippo Maria Castelli; Julien Cohen-Adad
Journal:  Front Neurosci       Date:  2022-04-19       Impact factor: 5.152

Review 6.  Biochemical Interactions through Microscopic Techniques: Structural and Molecular Characterization.

Authors:  Hassan Nezammahalleh; Faezeh Ghanati; Shima Rezaei; Mohsin Ali Badshah; Joobee Park; Naseem Abbas; Ahsan Ali
Journal:  Polymers (Basel)       Date:  2022-07-13       Impact factor: 4.967

7.  Standard metadata for 3D microscopy.

Authors:  Alexander J Ropelewski; Megan A Rizzo; Jason R Swedlow; Jan Huisken; Pavel Osten; Neda Khanjani; Kurt Weiss; Vesselina Bakalov; Michelle Engle; Lauren Gridley; Michelle Krzyzanowski; Tom Madden; Deborah Maiese; Meisha Mandal; Justin Waterfield; David Williams; Carol M Hamilton; Wayne Huggins
Journal:  Sci Data       Date:  2022-07-27       Impact factor: 8.501

Review 8.  How innovations in methodology offer new prospects for volume electron microscopy.

Authors:  Arent J Kievits; Ryan Lane; Elizabeth C Carroll; Jacob P Hoogenboom
Journal:  J Microsc       Date:  2022-07-27       Impact factor: 1.952

  8 in total

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