Literature DB >> 34012667

Transcriptome sequencing-based personalized analysis of hepatocellular carcinoma patients with portal vein tumor thrombus.

Zhenkang Qiu1, Guobao Wang2, Guang Yang1, Guisong Wang1, Weiwei Jiang1, Zixiong Chen1, Wenliang Zhu1, Huanqing Guo1, Fujun Zhang1, Fei Gao1.   

Abstract

BACKGROUND: The mechanism of portal vein tumor thrombus (PVTT) in hepatocellular carcinoma (HCC) has been widely studied, and numerous diagnostic and prognostic biomarkers for HCC with PVTT have been identified. We aimed to evaluate the extent to which these biomarkers may aid the personalized precision therapy of HCC with PVTT.
METHODS: Matched tissue specimens [primary HCC tumor (PT), adjacent normal (N) liver, and PVTT tissues] were acquired from 3 Chinese HCC patients who underwent surgery at Sun Yat-sen University Cancer Centre between 2019 and 2020. Ribonucleic acid (RNA) sequencing was performed on the 9 tissue samples. GFOLD (generalized fold change) algorithm was used to analyze the differently expressed genes (DEGs) between the PVTT, PT, and normal tissues from each patient. Genes with a P<0.01 and a |GFOLD value| >1 were identified as having significantly different expression.
RESULTS: In total, 3,543, 32,472, and 12,901 tumorigenesis-associated genes, and 2,919, 17,679, and 14,825 metastasis-associated genes, were detected in Patient 1 (P1), Patient 2 (P2), and Patient 3 (P3), respectively. We analyzed the expression levels of genes associated with hypoxia, macrophage recruitment and cancer stem cells (CSCs). The results showed that hypoxia and CSCs may have contributed to tumorigenesis but not to metastasis in P1. We also found the hypoxia microenvironment played an important role in tumorigenesis and metastasis in P2, and CSCs may have contributed to metastasis. Additionally, we found that CSCs played critical roles in metastasis but not in tumorigenesis in P3. The results also showed that the long non-coding RNA (lncRNA) Metastasis-Associated Lung Adenocarcinoma Transcript 1 (MALAT1) was greatly overexpressed in the PTs and PVTT in all 3 patients, and Heart and Neural Crest Derivatives Expressed 2-antisense RNA 1 (HAND2-AS1) was downregulated in PVTT compared with PTs in all 3 patients. Thus, MALAT1 and HAND2-AS1 may be robust biomarkers for metastasis in HCC patients with PVTT.
CONCLUSIONS: Tumor-associated macrophages (TAMs)-targeted immunotherapy is a promising therapy for HCC patients with PVTT. LncRNAs MALAT1, and HAND2-AS1 may be promising targets for HCC therapy. 2021 Journal of Gastrointestinal Oncology. All rights reserved.

Entities:  

Keywords:  Hepatocellular carcinoma (HCC); RNA sequencing (RNA-seq); differently expressed genes (DEGs); metastasis; portal vein tumor thrombus (PVTT); tumorigenesis

Year:  2021        PMID: 34012667      PMCID: PMC8107604          DOI: 10.21037/jgo-21-162

Source DB:  PubMed          Journal:  J Gastrointest Oncol        ISSN: 2078-6891


  26 in total

1.  A new classification for hepatocellular carcinoma with portal vein tumor thrombus.

Authors:  Jie Shi; Eric C H Lai; Nan Li; Wei-Xing Guo; Jie Xue; Wan-Yee Lau; Meng-Chao Wu; Shu-Qun Cheng
Journal:  J Hepatobiliary Pancreat Sci       Date:  2011-01       Impact factor: 7.027

2.  Up-regulation of DLK1 as an imprinted gene could contribute to human hepatocellular carcinoma.

Authors:  Jian Huang; Xin Zhang; Min Zhang; Jing-De Zhu; Yun-Li Zhang; Yun Lin; Ke-Sheng Wang; Xiao-Fei Qi; Qin Zhang; Guang-Zhen Liu; Jian Yu; Ying Cui; Peng-Yuan Yang; Zhi-Qin Wang; Ze-Guang Han
Journal:  Carcinogenesis       Date:  2006-11-17       Impact factor: 4.944

3.  Long noncoding RNA high expression in hepatocellular carcinoma facilitates tumor growth through enhancer of zeste homolog 2 in humans.

Authors:  Fu Yang; Ling Zhang; Xi-song Huo; Ji-hang Yuan; Dan Xu; Sheng-xian Yuan; Nan Zhu; Wei-ping Zhou; Guang-shun Yang; Yu-zhao Wang; Jing-li Shang; Chun-fang Gao; Feng-rui Zhang; Fang Wang; Shu-han Sun
Journal:  Hepatology       Date:  2011-09-06       Impact factor: 17.425

4.  Long noncoding RNA associated with microvascular invasion in hepatocellular carcinoma promotes angiogenesis and serves as a predictor for hepatocellular carcinoma patients' poor recurrence-free survival after hepatectomy.

Authors:  Sheng-Xian Yuan; Fu Yang; Yuan Yang; Qi-Fei Tao; Jin Zhang; Gang Huang; Yun Yang; Ruo-Yu Wang; Sen Yang; Xi-Song Huo; Ling Zhang; Fang Wang; Shu-Han Sun; Wei-Ping Zhou
Journal:  Hepatology       Date:  2012-12       Impact factor: 17.425

5.  Oncofetal long noncoding RNA PVT1 promotes proliferation and stem cell-like property of hepatocellular carcinoma cells by stabilizing NOP2.

Authors:  Fang Wang; Ji-Hang Yuan; Shao-Bing Wang; Fu Yang; Sheng-Xian Yuan; Chen Ye; Ning Yang; Wei-Ping Zhou; Wen-Lin Li; Wen Li; Shu-Han Sun
Journal:  Hepatology       Date:  2014-08-25       Impact factor: 17.425

6.  Intrahepatic metastases in hepatocellular carcinoma: the role of the portal vein as an efferent vessel.

Authors:  M Mitsunobu; A Toyosaka; T Oriyama; E Okamoto; N Nakao
Journal:  Clin Exp Metastasis       Date:  1996-11       Impact factor: 5.150

7.  Surgical treatment for hepatocellular carcinoma with portal vein tumor thrombus: a novel classification.

Authors:  Jiang-feng Xu; Xi-yu Liu; Shuai Wang; Huai-xi Wen
Journal:  World J Surg Oncol       Date:  2015-02-28       Impact factor: 2.754

8.  Tumor stage and primary treatment of hepatocellular carcinoma at a large tertiary hospital in China: A real-world study.

Authors:  Jian-Hong Zhong; Ning-Fu Peng; Xue-Mei You; Liang Ma; Xiao Xiang; Yan-Yan Wang; Wen-Feng Gong; Fei-Xiang Wu; Bang-De Xiang; Le-Qun Li
Journal:  Oncotarget       Date:  2017-03-14

9.  Recurrently deregulated lncRNAs in hepatocellular carcinoma.

Authors:  Yang Yang; Lei Chen; Jin Gu; Hanshuo Zhang; Jiapei Yuan; Qiuyu Lian; Guishuai Lv; Siqi Wang; Yang Wu; Yu-Cheng T Yang; Dongfang Wang; Yang Liu; Jing Tang; Guijuan Luo; Yang Li; Long Hu; Xinbao Sun; Dong Wang; Mingzhou Guo; Qiaoran Xi; Jianzhong Xi; Hongyang Wang; Michael Q Zhang; Zhi John Lu
Journal:  Nat Commun       Date:  2017-02-13       Impact factor: 14.919

Review 10.  The role of long noncoding RNAs in hepatocellular carcinoma.

Authors:  Zhao Huang; Jian-Kang Zhou; Yong Peng; Weifeng He; Canhua Huang
Journal:  Mol Cancer       Date:  2020-04-15       Impact factor: 27.401

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  1 in total

1.  Identification of Metastasis-Associated Genes in Cutaneous Squamous Cell Carcinoma Based on Bioinformatics Analysis and Experimental Validation.

Authors:  Lang Chen; Xuan Liao; Xiao Jiang; Jianxin Yan; Jiaji Liang; Liu Hongwei
Journal:  Adv Ther       Date:  2022-08-10       Impact factor: 4.070

  1 in total

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