Literature DB >> 34010281

Meta-analysis of variation suggests that embracing variability improves both replicability and generalizability in preclinical research.

Takuji Usui1,2, Malcolm R Macleod3, Sarah K McCann4,5, Alistair M Senior2, Shinichi Nakagawa1,2.   

Abstract

The replicability of research results has been a cause of increasing concern to the scientific community. The long-held belief that experimental standardization begets replicability has also been recently challenged, with the observation that the reduction of variability within studies can lead to idiosyncratic, lab-specific results that cannot be replicated. An alternative approach is to, instead, deliberately introduce heterogeneity, known as "heterogenization" of experimental design. Here, we explore a novel perspective in the heterogenization program in a meta-analysis of variability in observed phenotypic outcomes in both control and experimental animal models of ischemic stroke. First, by quantifying interindividual variability across control groups, we illustrate that the amount of heterogeneity in disease state (infarct volume) differs according to methodological approach, for example, in disease induction methods and disease models. We argue that such methods may improve replicability by creating diverse and representative distribution of baseline disease state in the reference group, against which treatment efficacy is assessed. Second, we illustrate how meta-analysis can be used to simultaneously assess efficacy and stability (i.e., mean effect and among-individual variability). We identify treatments that have efficacy and are generalizable to the population level (i.e., low interindividual variability), as well as those where there is high interindividual variability in response; for these, latter treatments translation to a clinical setting may require nuance. We argue that by embracing rather than seeking to minimize variability in phenotypic outcomes, we can motivate the shift toward heterogenization and improve both the replicability and generalizability of preclinical research.

Entities:  

Year:  2021        PMID: 34010281     DOI: 10.1371/journal.pbio.3001009

Source DB:  PubMed          Journal:  PLoS Biol        ISSN: 1544-9173            Impact factor:   8.029


  7 in total

Review 1.  Deregulated Protein Kinases: Friend and Foe in Ischemic Stroke.

Authors:  Sandeep Appunni; Deepika Gupta; Muni Rubens; Venkataraghavan Ramamoorthy; Himanshu Narayan Singh; Vishnu Swarup
Journal:  Mol Neurobiol       Date:  2021-09-22       Impact factor: 5.590

2.  The Stroke Preclinical Assessment Network: Rationale, Design, Feasibility, and Stage 1 Results.

Authors:  Patrick D Lyden; Francesca Bosetti; Márcio A Diniz; André Rogatko; James I Koenig; Jessica Lamb; Karisma A Nagarkatti; Ryan P Cabeen; David C Hess; Pradip K Kamat; Mohammad B Khan; Kristofer Wood; Krishnan Dhandapani; Ali S Arbab; Enrique C Leira; Anil K Chauhan; Nirav Dhanesha; Rakesh B Patel; Mariia Kumskova; Daniel Thedens; Andreia Morais; Takahiko Imai; Tao Qin; Cenk Ayata; Ligia S B Boisserand; Alison L Herman; Hannah E Beatty; Sofia E Velazquez; Sebastian Diaz-Perez; Basavaraju G Sanganahalli; Jelena M Mihailovic; Fahmeed Hyder; Lauren H Sansing; Raymond C Koehler; Steven Lannon; Yanrong Shi; Senthilkumar S Karuppagounder; Adnan Bibic; Kazi Akhter; Jaroslaw Aronowski; Louise D McCullough; Anjali Chauhan; Andrew Goh
Journal:  Stroke       Date:  2022-03-31       Impact factor: 10.170

3.  A composite clinical motor score as a comprehensive and sensitive outcome measure for Parkinson's disease.

Authors:  Christine Lo; Siddharth Arora; Michael Lawton; Thomas Barber; Timothy Quinnell; Gary J Dennis; Yoav Ben-Shlomo; Michele Tao-Ming Hu
Journal:  J Neurol Neurosurg Psychiatry       Date:  2022-04-06       Impact factor: 13.654

Review 4.  Environmental Enrichment for Rats and Mice Housed in Laboratories: A Metareview.

Authors:  Anna S Ratuski; Daniel M Weary
Journal:  Animals (Basel)       Date:  2022-02-09       Impact factor: 2.752

Review 5.  Roadbumps at the Crossroads of Integrating Behavioral and In Vitro Approaches for Neurotoxicity Assessment.

Authors:  G Jean Harry; Sandra McBride; Shannah K Witchey; Sakina Mhaouty-Kodja; Alain Trembleau; Matthew Bridge; Anna Bencsik
Journal:  Front Toxicol       Date:  2022-02-25

6.  URB597 induces subtle changes to aggression in adult Lister Hooded rats.

Authors:  William G Warren; Ed Hale; Eleni P Papagianni; Helen J Cassaday; Carl W Stevenson; Christine Stubbendorff
Journal:  Front Psychiatry       Date:  2022-08-12       Impact factor: 5.435

Review 7.  Animal pollination increases stability of crop yield across spatial scales.

Authors:  Jacob Bishop; Michael P D Garratt; Shinichi Nakagawa
Journal:  Ecol Lett       Date:  2022-07-17       Impact factor: 11.274

  7 in total

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