Literature DB >> 34009970

Machine Learning of Analytical Electron Density in Large Molecules Through Message-Passing.

Bruno Cuevas-Zuviría1, Luis F Pacios1,2.   

Abstract

Machine learning milestones in computational chemistry are overshadowed by their unaccountability and the overwhelming zoo of tools for each specific task. A promising path to tackle these problems is using machine learning to reproduce physical magnitudes as a basis to derive many other properties. By using a model of the electron density consisting of an analytical expansion on a linear set of isotropic and anisotropic functions, we implemented in this work a message-passing neural network able to reproduce electron density in molecules with just a 2.5% absolute error in complex cases. We also adapted our methodology to describe electron density in large biomolecules (proteins) and to obtain atomic charges, interaction energies, and DFT energies. We show that electron density learning is a new promising avenue with a variety of forthcoming applications.

Year:  2021        PMID: 34009970     DOI: 10.1021/acs.jcim.1c00227

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  1 in total

1.  Multipolar Atom Types from Theory and Statistical Clustering (MATTS) Data Bank: Impact of Surrounding Atoms on Electron Density from Cluster Analysis.

Authors:  Paulina Maria Rybicka; Marta Kulik; Michał Leszek Chodkiewicz; Paulina Maria Dominiak
Journal:  J Chem Inf Model       Date:  2022-08-09       Impact factor: 6.162

  1 in total

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