Literature DB >> 34009589

Assessment of Molecular Diversity in Biofuel Crops.

Sriram Parameswaran1, Nalini Eswaran2, T Sudhakar Johnson3.   

Abstract

Sustainable biofuel sources require the new sources of biofuel crops that can be developed into scalable plantation to meet the growing energy demands. Diverse supply sources of bioenergy plantations (edible, nonedible, and perennial grasses) will enable de-risking impact on geography and climate change that humans are likely to face in future. Use of phenotypic descriptors alone does not provide a deep insight into plantation population dynamics and molecular diversity of a biofuel crop. We provide protocols and methods to rapidly assess population parameters for emerging biofuel crops using genomics. This article has an application focus on next-generation sequencing to assess biofuel crop diversity. Use of these methods can accelerate germplasm assessment to accelerate population development and creation of sustainable biofuel plantations.

Entities:  

Keywords:  Biofuel crop; Climate change impact; Molecular diversity; Next-generation sequencing; Population diversity; Soil microbiome

Year:  2021        PMID: 34009589     DOI: 10.1007/978-1-0716-1323-8_11

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  8 in total

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2.  Metagenomics using next-generation sequencing.

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Journal:  Methods Mol Biol       Date:  2014

3.  Near-optimal probabilistic RNA-seq quantification.

Authors:  Nicolas L Bray; Harold Pimentel; Páll Melsted; Lior Pachter
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4.  Establishing the gut microbiota after birth.

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5.  PANDAseq: paired-end assembler for illumina sequences.

Authors:  Andre P Masella; Andrea K Bartram; Jakub M Truszkowski; Daniel G Brown; Josh D Neufeld
Journal:  BMC Bioinformatics       Date:  2012-02-14       Impact factor: 3.169

6.  Mapping QTLs for oil traits and eQTLs for oleosin genes in jatropha.

Authors:  Peng Liu; Chun Ming Wang; Lei Li; Fei Sun; Peng Liu; Gen Hua Yue
Journal:  BMC Plant Biol       Date:  2011-09-29       Impact factor: 4.215

7.  Editorial: Advances in Oil Crops Research-Classical and New Approaches to Achieve Sustainable Productivity.

Authors:  Dragana Miladinović; Johann Vollmann; Leire Molinero-Ruiz; Mariela Torres
Journal:  Front Plant Sci       Date:  2019-06-18       Impact factor: 5.753

8.  Protocol: a simple method for extracting next-generation sequencing quality genomic DNA from recalcitrant plant species.

Authors:  Adam Healey; Agnelo Furtado; Tal Cooper; Robert J Henry
Journal:  Plant Methods       Date:  2014-06-27       Impact factor: 4.993

  8 in total

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