Literature DB >> 34002075

Mining the gaps of chromosome 8.

Glennis A Logsdon, Evan E Eichler.   

Abstract

Keywords:  DNA sequencing; Evolution; Genetics; Genomics

Year:  2021        PMID： 34002075     DOI： 10.1038/d41586-021-01095-8

Source DB:  PubMed          Journal:  Nature        ISSN： 0028-0836            Impact factor:   49.962


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  9 in total

1.  Automated assembly of centromeres from ultra-long error-prone reads.

Authors:  Andrey V Bzikadze; Pavel A Pevzner
Journal:  Nat Biotechnol       Date:  2020-07-14       Impact factor: 54.908

2.  HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads.

Authors:  Sergey Nurk; Brian P Walenz; Arang Rhie; Mitchell R Vollger; Glennis A Logsdon; Robert Grothe; Karen H Miga; Evan E Eichler; Adam M Phillippy; Sergey Koren
Journal:  Genome Res       Date:  2020-08-14       Impact factor: 9.043

Review 3.  Long-read human genome sequencing and its applications.

Authors:  Glennis A Logsdon; Mitchell R Vollger; Evan E Eichler
Journal:  Nat Rev Genet       Date:  2020-06-05       Impact factor: 53.242

4.  Haplotype-resolved diverse human genomes and integrated analysis of structural variation.

Authors:  Peter Ebert; Peter A Audano; Qihui Zhu; Bernardo Rodriguez-Martin; Charles Lee; Jan O Korbel; Tobias Marschall; Evan E Eichler; David Porubsky; Marc Jan Bonder; Arvis Sulovari; Jana Ebler; Weichen Zhou; Rebecca Serra Mari; Feyza Yilmaz; Xuefang Zhao; PingHsun Hsieh; Joyce Lee; Sushant Kumar; Jiadong Lin; Tobias Rausch; Yu Chen; Jingwen Ren; Martin Santamarina; Wolfram Höps; Hufsah Ashraf; Nelson T Chuang; Xiaofei Yang; Katherine M Munson; Alexandra P Lewis; Susan Fairley; Luke J Tallon; Wayne E Clarke; Anna O Basile; Marta Byrska-Bishop; André Corvelo; Uday S Evani; Tsung-Yu Lu; Mark J P Chaisson; Junjie Chen; Chong Li; Harrison Brand; Aaron M Wenger; Maryam Ghareghani; William T Harvey; Benjamin Raeder; Patrick Hasenfeld; Allison A Regier; Haley J Abel; Ira M Hall; Paul Flicek; Oliver Stegle; Mark B Gerstein; Jose M C Tubio; Zepeng Mu; Yang I Li; Xinghua Shi; Alex R Hastie; Kai Ye; Zechen Chong; Ashley D Sanders; Michael C Zody; Michael E Talkowski; Ryan E Mills; Scott E Devine
Journal:  Science       Date:  2021-02-25       Impact factor: 47.728

5.  Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm.

Authors:  Haoyu Cheng; Gregory T Concepcion; Xiaowen Feng; Haowen Zhang; Heng Li
Journal:  Nat Methods       Date:  2021-02-01       Impact factor: 28.547

6.  Resolving the complexity of the human genome using single-molecule sequencing.

Authors:  Mark J P Chaisson; John Huddleston; Megan Y Dennis; Peter H Sudmant; Maika Malig; Fereydoun Hormozdiari; Francesca Antonacci; Urvashi Surti; Richard Sandstrom; Matthew Boitano; Jane M Landolin; John A Stamatoyannopoulos; Michael W Hunkapiller; Jonas Korlach; Evan E Eichler
Journal:  Nature       Date:  2014-11-10       Impact factor: 49.962

7.  Nanopore sequencing and assembly of a human genome with ultra-long reads.

Authors:  Miten Jain; Sergey Koren; Karen H Miga; Josh Quick; Arthur C Rand; Thomas A Sasani; John R Tyson; Andrew D Beggs; Alexander T Dilthey; Ian T Fiddes; Sunir Malla; Hannah Marriott; Tom Nieto; Justin O'Grady; Hugh E Olsen; Brent S Pedersen; Arang Rhie; Hollian Richardson; Aaron R Quinlan; Terrance P Snutch; Louise Tee; Benedict Paten; Adam M Phillippy; Jared T Simpson; Nicholas J Loman; Matthew Loose
Journal:  Nat Biotechnol       Date:  2018-01-29       Impact factor: 54.908

8.  Telomere-to-telomere assembly of a complete human X chromosome.

Authors:  Karen H Miga; Sergey Koren; Arang Rhie; Mitchell R Vollger; Ariel Gershman; Andrey Bzikadze; Shelise Brooks; Edmund Howe; David Porubsky; Glennis A Logsdon; Valerie A Schneider; Tamara Potapova; Jonathan Wood; William Chow; Joel Armstrong; Jeanne Fredrickson; Evgenia Pak; Kristof Tigyi; Milinn Kremitzki; Christopher Markovic; Valerie Maduro; Amalia Dutra; Gerard G Bouffard; Alexander M Chang; Nancy F Hansen; Amy B Wilfert; Françoise Thibaud-Nissen; Anthony D Schmitt; Jon-Matthew Belton; Siddarth Selvaraj; Megan Y Dennis; Daniela C Soto; Ruta Sahasrabudhe; Gulhan Kaya; Josh Quick; Nicholas J Loman; Nadine Holmes; Matthew Loose; Urvashi Surti; Rosa Ana Risques; Tina A Graves Lindsay; Robert Fulton; Ira Hall; Benedict Paten; Kerstin Howe; Winston Timp; Alice Young; James C Mullikin; Pavel A Pevzner; Jennifer L Gerton; Beth A Sullivan; Evan E Eichler; Adam M Phillippy
Journal:  Nature       Date:  2020-07-14       Impact factor: 49.962

9.  Improved assembly and variant detection of a haploid human genome using single-molecule, high-fidelity long reads.

Authors:  Mitchell R Vollger; Glennis A Logsdon; Peter A Audano; Arvis Sulovari; David Porubsky; Paul Peluso; Aaron M Wenger; Gregory T Concepcion; Zev N Kronenberg; Katherine M Munson; Carl Baker; Ashley D Sanders; Diana C J Spierings; Peter M Lansdorp; Urvashi Surti; Michael W Hunkapiller; Evan E Eichler
Journal:  Ann Hum Genet       Date:  2019-11-11       Impact factor: 1.670
  9 in total

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