Literature DB >> 33997789

CDK4/6 inhibition reprograms the breast cancer enhancer landscape by stimulating AP-1 transcriptional activity.

April C Watt1,2, Paloma Cejas3,4,5, Molly J DeCristo6, Otto Metzger-Filho7, Enid Y N Lam1,2, Xintao Qiu3, Haley BrinJones6, Nikolas Kesten3, Rhiannon Coulson1,2, Alba Font-Tello3, Klothilda Lim3, Raga Vadhi3, Veerle W Daniels7, Joan Montero7,8, Len Taing3, Clifford A Meyer3, Omer Gilan1,2, Charles C Bell1,2, Keegan D Korthauer9,10, Claudia Giambartolomei11,12, Bogdan Pasaniuc11, Ji-Heui Seo3,7, Matthew L Freedman3,7, Cynthia Ma13, Matthew J Ellis14, Ian Krop7, Eric Winer7, Anthony Letai7, Myles Brown3,7, Mark A Dawson1,2,15, Henry W Long3,7, Jean J Zhao6,16,17, Shom Goel1,2,7.   

Abstract

Pharmacologic inhibitors of cyclin-dependent kinases 4 and 6 (CDK4/6) were designed to induce cancer cell cycle arrest. Recent studies have suggested that these agents also exert other effects, influencing cancer cell immunogenicity, apoptotic responses, and differentiation. Using cell-based and mouse models of breast cancer together with clinical specimens, we show that CDK4/6 inhibitors induce remodeling of cancer cell chromatin characterized by widespread enhancer activation, and that this explains many of these effects. The newly activated enhancers include classical super-enhancers that drive luminal differentiation and apoptotic evasion, as well as a set of enhancers overlying endogenous retroviral elements that is enriched for proximity to interferon-driven genes. Mechanistically, CDK4/6 inhibition increases the level of several Activator Protein-1 (AP-1) transcription factor proteins, which are in turn implicated in the activity of many of the new enhancers. Our findings offer insights into CDK4/6 pathway biology and should inform the future development of CDK4/6 inhibitors.

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Year:  2020        PMID: 33997789      PMCID: PMC8115221          DOI: 10.1038/s43018-020-00135-y

Source DB:  PubMed          Journal:  Nat Cancer        ISSN: 2662-1347


  63 in total

1.  Drug-induced death signaling strategy rapidly predicts cancer response to chemotherapy.

Authors:  Joan Montero; Kristopher A Sarosiek; Joseph D DeAngelo; Ophélia Maertens; Jeremy Ryan; Dalia Ercan; Huiying Piao; Neil S Horowitz; Ross S Berkowitz; Ursula Matulonis; Pasi A Jänne; Philip C Amrein; Karen Cichowski; Ronny Drapkin; Anthony Letai
Journal:  Cell       Date:  2015-02-26       Impact factor: 41.582

2.  An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues.

Authors:  M Ryan Corces; Alexandro E Trevino; Emily G Hamilton; Peyton G Greenside; Nicholas A Sinnott-Armstrong; Sam Vesuna; Ansuman T Satpathy; Adam J Rubin; Kathleen S Montine; Beijing Wu; Arwa Kathiria; Seung Woo Cho; Maxwell R Mumbach; Ava C Carter; Maya Kasowski; Lisa A Orloff; Viviana I Risca; Anshul Kundaje; Paul A Khavari; Thomas J Montine; William J Greenleaf; Howard Y Chang
Journal:  Nat Methods       Date:  2017-08-28       Impact factor: 28.547

Review 3.  Cyclin-dependent kinase 4 and 6 inhibitors for hormone receptor-positive breast cancer: past, present, and future.

Authors:  Laura M Spring; Seth A Wander; Fabrice Andre; Beverly Moy; Nicholas C Turner; Aditya Bardia
Journal:  Lancet       Date:  2020-03-07       Impact factor: 79.321

4.  NeoPalAna: Neoadjuvant Palbociclib, a Cyclin-Dependent Kinase 4/6 Inhibitor, and Anastrozole for Clinical Stage 2 or 3 Estrogen Receptor-Positive Breast Cancer.

Authors:  Cynthia X Ma; Feng Gao; Jingqin Luo; Donald W Northfelt; Matthew Goetz; Andres Forero; Jeremy Hoog; Michael Naughton; Foluso Ademuyiwa; Rama Suresh; Karen S Anderson; Julie Margenthaler; Rebecca Aft; Timothy Hobday; Timothy Moynihan; William Gillanders; Amy Cyr; Timothy J Eberlein; Tina Hieken; Helen Krontiras; Zhanfang Guo; Michelle V Lee; Nicholas C Spies; Zachary L Skidmore; Obi L Griffith; Malachi Griffith; Shana Thomas; Caroline Bumb; Kiran Vij; Cynthia Huang Bartlett; Maria Koehler; Hussam Al-Kateb; Souzan Sanati; Matthew J Ellis
Journal:  Clin Cancer Res       Date:  2017-03-07       Impact factor: 12.531

5.  PD 0332991, a selective cyclin D kinase 4/6 inhibitor, preferentially inhibits proliferation of luminal estrogen receptor-positive human breast cancer cell lines in vitro.

Authors:  Richard S Finn; Judy Dering; Dylan Conklin; Ondrej Kalous; David J Cohen; Amrita J Desai; Charles Ginther; Mohammad Atefi; Isan Chen; Camilla Fowst; Gerret Los; Dennis J Slamon
Journal:  Breast Cancer Res       Date:  2009       Impact factor: 6.466

6.  BEDTools: a flexible suite of utilities for comparing genomic features.

Authors:  Aaron R Quinlan; Ira M Hall
Journal:  Bioinformatics       Date:  2010-01-28       Impact factor: 6.937

7.  A role for both RB and p53 in the regulation of human cellular senescence.

Authors:  J W Shay; O M Pereira-Smith; W E Wright
Journal:  Exp Cell Res       Date:  1991-09       Impact factor: 3.905

8.  Genomes of replicatively senescent cells undergo global epigenetic changes leading to gene silencing and activation of transposable elements.

Authors:  Marco De Cecco; Steven W Criscione; Edward J Peckham; Sara Hillenmeyer; Eliza A Hamm; Jayameenakshi Manivannan; Abigail L Peterson; Jill A Kreiling; Nicola Neretti; John M Sedivy
Journal:  Aging Cell       Date:  2013-01-30       Impact factor: 9.304

9.  ATAC-seq: A Method for Assaying Chromatin Accessibility Genome-Wide.

Authors:  Jason D Buenrostro; Beijing Wu; Howard Y Chang; William J Greenleaf
Journal:  Curr Protoc Mol Biol       Date:  2015-01-05

10.  Fast and accurate short read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2009-05-18       Impact factor: 6.937

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  11 in total

1.  Master lineage transcription factors anchor trans mega transcriptional complexes at highly accessible enhancer sites to promote long-range chromatin clustering and transcription of distal target genes.

Authors:  Shannon M White; Michael P Snyder; Chunling Yi
Journal:  Nucleic Acids Res       Date:  2021-12-02       Impact factor: 16.971

Review 2.  Targeting oncogene and non-oncogene addiction to inflame the tumour microenvironment.

Authors:  Giulia Petroni; Aitziber Buqué; Lisa M Coussens; Lorenzo Galluzzi
Journal:  Nat Rev Drug Discov       Date:  2022-03-15       Impact factor: 84.694

3.  Chromatin-bound RB targets promoters, enhancers, and CTCF-bound loci and is redistributed by cell-cycle progression.

Authors:  Ioannis Sanidas; Hanjun Lee; Purva H Rumde; Gaylor Boulay; Robert Morris; Gabriel Golczer; Marcelo Stanzione; Soroush Hajizadeh; Jun Zhong; Meagan B Ryan; Ryan B Corcoran; Benjamin J Drapkin; Miguel N Rivera; Nicholas J Dyson; Michael S Lawrence
Journal:  Mol Cell       Date:  2022-08-17       Impact factor: 19.328

4.  Allelic imbalance of chromatin accessibility in cancer identifies candidate causal risk variants and their mechanisms.

Authors:  Dennis Grishin; Alexander Gusev
Journal:  Nat Genet       Date:  2022-06-13       Impact factor: 41.307

Review 5.  Targeting CDK4 and CDK6 in cancer.

Authors:  Shom Goel; Johann S Bergholz; Jean J Zhao
Journal:  Nat Rev Cancer       Date:  2022-03-18       Impact factor: 69.800

6.  Active RB causes visible changes in nuclear organization.

Authors:  Badri Krishnan; Takaaki Yasuhara; Purva Rumde; Marcello Stanzione; Chenyue Lu; Hanjun Lee; Michael S Lawrence; Lee Zou; Linda T Nieman; Ioannis Sanidas; Nicholas J Dyson
Journal:  J Cell Biol       Date:  2022-01-12       Impact factor: 10.539

Review 7.  Cellular mechanisms underlying response and resistance to CDK4/6 inhibitors in the treatment of hormone receptor-positive breast cancer.

Authors:  April C Watt; Shom Goel
Journal:  Breast Cancer Res       Date:  2022-03-05       Impact factor: 6.466

Review 8.  Epigenetic Mechanisms Influencing Therapeutic Response in Breast Cancer.

Authors:  Amaia Arruabarrena-Aristorena; Eneda Toska
Journal:  Front Oncol       Date:  2022-06-14       Impact factor: 5.738

Review 9.  Targeting CDK4 and 6 in Cancer Therapy: Emerging Preclinical Insights Related to Abemaciclib.

Authors:  Seth A Wander; Neil O'Brien; Lacey M Litchfield; Declan O'Dea; Claudia Morato Guimaraes; Dennis J Slamon; Shom Goel
Journal:  Oncologist       Date:  2022-10-01       Impact factor: 5.837

Review 10.  Palbociclib as an early-line treatment for Japanese patients with hormone receptor-positive/human epidermal growth factor receptor 2-negative advanced breast cancer: a review of clinical trial and real-world data.

Authors:  Norikazu Masuda; Nobuyoshi Kosaka; Hiroji Iwata; Masakazu Toi
Journal:  Int J Clin Oncol       Date:  2021-10-26       Impact factor: 3.402

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