| Literature DB >> 33996548 |
Jinhua He1, Feifeng Wu2, Zeping Han1, Min Hu2, Weida Lin2, Yuguang Li1, Mingrong Cao2.
Abstract
In recent years, the diagnosis and treatment of colorectal cancer (CRC) have been continuously improved, but the mortality rate continues to be high, especially in advanced patients. CRC patients usually have no obvious symptoms in the early stage and are already in the advanced stage when they are diagnosed. The 5-year survival rate is only 10%. The blood markers currently used to screen for CRC, such as carcinoembryonic antigen and carbohydrate antigen 19-9, have low sensitivity and specificity, whereas other methods are invasive or too expensive. As a result, recent research has shifted to the development of minimally invasive or noninvasive biomarkers in the form of body fluid biopsies. Non-coding RNA molecules are composed of microRNAs, long non-coding RNAs, small nucleolar RNAs, and circular RNAs, which have important roles in the occurrence and development of diseases and can be utilized for the early diagnosis and prognosis of tumors. In this review, we focus on the latest findings of mRNA-ncRNA as biomarkers for the diagnosis and prognosis of CRC, from fluid to tissue level.Entities:
Keywords: biomarkers; colorectal cancer; diagnosis; mRNA; ncRNA; prognosis
Year: 2021 PMID: 33996548 PMCID: PMC8118670 DOI: 10.3389/fonc.2021.632834
Source DB: PubMed Journal: Front Oncol ISSN: 2234-943X Impact factor: 6.244
MicroRNAs as potential biomarkers for colorectal cancer.
| MicroRNA | Expression | Sample | Biomarker | Reference |
|---|---|---|---|---|
| miR-21 | ↑ | Tissue/Plasma exosomes | Diagnostic/Prognostic | ( |
| miR-23a | ↑ | Serum/Plasma exosomes | Diagnostic | ( |
| miR-17-5p | ↑ | Plasma/Tissue/Exosomes | Diagnostic/Prognostic | ( |
| miR-150-5p | ↓ | Serum | Diagnostic | ( |
| miR-92a | ↑ | Plasma exosomes | Diagnostic | ( |
| miR-29a | ↑ | Serum/Exosomes/Stool | Diagnostic | ( |
| miR-122 | ↑ | Serum | Diagnostic/Prognostic | ( |
| miR-199a/b-3p | ↑ | Serum | Prognostic | ( |
| miR-199a-5p | ↑ | Serum | Prognostic | ( |
| miR-199b-5p | ↑ | Serum | Prognostic | ( |
| miR-99b-5p | ↓ | Serum | Diagnostic | ( |
| miR-4461 | ↓ | Serum | Diagnostic/Therapeutic | ( |
| miR-92b | ↓ | Serum | Diagnostic | ( |
| miR‐320d | ↑ | Serum | Diagnostic | ( |
| miR-301a | ↑ | Serum | Diagnostic | ( |
| miR-181a-5p | ↑ | Plasma/Tissue/Exosomes | Diagnostic | ( |
| miR-18a-5p | ↑ | Plasma/Tissue/Exosomes | Diagnostic | ( |
| miR-18b-5p | ↑ | Plasma/Tissue/Exosomes | Diagnostic | ( |
| miR-548c-5p | ↓ | Plasma exosomes | Diagnostic/Prognostic | ( |
| miR-27a | ↑ | Plasma exosomes | Diagnostic/Prognostic | ( |
| miR-130a | ↑ | Plasma exosomes | Diagnostic/Prognostic | ( |
| miR-92a-3p | ↑ | Plasma exosomes | Prognostic | ( |
| miR-6803-5p | ↑ | Plasma exosomes | Diagnostic/Prognostic | ( |
| miR-6869-5p | ↓ | Plasma exosomes | Prognostic | ( |
| miR-125a-3p | ↑ | Plasma exosomes | Diagnostic | ( |
| miR-96-5p | ↓ | Tissue/Plasma exosomes | Diagnostic/Therapeutic | ( |
| miR-149 | ↓ | Tissue/Plasma exosomes | Diagnostic/Therapeutic | ( |
| miR-19a-3p | ↑ | Tissue/Plasma exosomes | Diagnostic | ( |
| miR-21-5p | ↑ | Tissue/Plasma exosomes | Diagnostic | ( |
| miR-425-5p | ↑ | Tissue/Plasma exosomes | Diagnostic | ( |
| miR-1246 | ↑ | Plasma exosomes | Diagnostic | ( |
| miR-4772-3p | ↓ | Plasma exosomes | Prognostic | ( |
| miR-19a | ↑ | Serum/Exosomes | Prognostic | ( |
| miR-34a-5p | ↓ | Tissue | Prognostic | ( |
| miR-132 | ↓ | Tissue | Prognostic | ( |
| miR-199b | ↓ | Tissue | Prognostic | ( |
| miR-145 | ↓ | Tissue/Serum | Prognostic | ( |
| miR-223 | ↓ | Stool | Diagnostic | ( |
| miR-224 | ↓ | Stool | Diagnostic | ( |
| miR-195-5p | ↓ | Tissue/Cell lines | Prognostic | ( |
| miR-145-5p | ↓ | Tissue | Diagnostic/Therapeutic | ( |
References showed in .
Potential long non-coding RNAs as biomarkers for the diagnosis and prognosis of colorectal cancer.
| LncRNA | Expression | Sample | Biomarker | Reference |
|---|---|---|---|---|
| CCAT1 | ↑ | Tissue/Plasma | Diagnostic/Prognostic | ( |
| HOTAIR | ↑ | Tissue/Cell lines | Diagnostic/Therapeutic | ( |
| NEAT1 | ↑ | Cell lines | Diagnostic/Therapeutic | ( |
| PVT1 | ↑ | Tissue | Diagnostic/Prognostic | ( |
| MALAT1 | ↑ | Tissue/Cell lines | ( | |
| UAC1 | ↑ | Tissue/Cell lines/Exosomes | Diagnostic/Prognostic | ( |
| BCYRN1 | ↑ | Tissue/Cell lines | Prognostic/Therapeutic | ( |
| CCAT2 | ↑ | Tissue | Diagnostic/Prognostic | ( |
| XIST | ↑ | Tissue/Cell lines | Prognostic/Therapeutic | ( |
| PANDAR | ↑ | Tissue/Cell lines | Prognostic | ( |
| H19 | ↑ | Tissue/Cell lines | Diagnostic/Prognostic/Therapeutic | ( |
| SNHG6 | ↑ | Tissue/Cell lines | Prognostic/Therapeutic | ( |
| LINC01510 | ↑ | Tissue/Cell lines | Prognostic | ( |
| MIR4435-2HG | ↑ | Tissue | Diagnostic/Prognostic | ( |
| SLCO4A1-AS1 | ↑ | Tissue/Cell lines | Prognostic/Therapeutic | ( |
| RP11-59H7.3 | ↑ | Tissue/Serum/Cell lines | Diagnostic/Therapeutic | ( |
| GACAT3 | ↑ | Tissue | Diagnostic/Prognostic | ( |
| LINC00152 | ↑ | Tissue | Diagnostic/Prognostic | ( |
| TRERNA1 | ↑ | Tissue/Cell lines | Prognostic | ( |
| LEF1-AS1 | ↑ | Tissue/Cell lines | Therapeutic/Prognostic | ( |
| B3GALT5-AS1 | ↓ | Serum | Diagnostic | ( |
| DANCR | ↑ | Serum | Diagnostic | ( |
| HANR | ↑ | Tissue | Diagnostic/Prognostic | ( |
| MFI2-AS1 | ↑ | Tissue | Prognostic/Therapeutic | ( |
| treRNA | ↑ | Tissue | Prognostic | ( |
| LINC00461 | ↑ | Tissue/Cell lines | Prognostic/Therapeutic | ( |
| AP003555.2 | ↑ | Tissue | Prognostic | ( |
| AP006284.1 | ↑ | Tissue | Prognostic | ( |
| LINC01602 | ↑ | Tissue | Prognostic | ( |
| LINRIS | ↑ | Tissue/Cell lines | Prognostic/Therapeutic | ( |
| cCSC1 | ↑ | Tissue/Cell lines | Prognostic/Therapeutic | ( |
| LINC01234 | ↑ | Tissue | Prognostic | ( |
| SNHG11 | ↑ | Plasma | Diagnostic/Prognostic | ( |
| AK001058 | ↑ | Cell lines | Diagnostic/Therapeutic | ( |
| DNAH17-AS1 | ↑ | Tissue | Prognostic/Therapeutic | ( |
| RP11-400N13.2 | ↑ | Tissue | Prognostic/Therapeutic | ( |
| LINC00957 | ↑ | Tissue/Cell lines | Prognostic/Therapeutic | ( |
| NKILA | ↓ | Tissue/Cell lines | Diagnostic/Prognostic | ( |
| MEG3 | ↓ | Tissue/Cell lines/Serum | Diagnostic/Prognostic | ( |
| XIRP2-AS1 | ↓ | Tissue/Cell lines | Prognostic/Therapeutic | ( |
| CTA-941F9.9 | ↓ | Tissue | Diagnostic | ( |
| ZFAS1 | ↑ | Tissue/Cell lines | Diagnostic/Therapeutic | ( |
| LNRRIL6 | ↑ | Tissue/Cell lines | Prognostic/Therapeutic | ( |
| KIAA0125 | ↓ | Tissue/Cell lines | Diagnostic | ( |
| IQCJ-SCHIP1 | ↓ | Tissue | Prognostic/Therapeutic | ( |
| DILC | ↓ | Tissue | Diagnostic/Prognostic | ( |
| CRCAL-3 | ↑ | Tissue/Cell lines | Diagnostic/Prognostic/Therapeutic | ( |
| CASC19 | ↑ | Tissue/Cell lines | Diagnostic/Therapeutic | ( |
| HOTTIP | ↑ | Tissue | Diagnostic | ( |
| PVT1 | ↑ | Tissue | Diagnostic | ( |
| UCA1 | ↑ | Tissue | Diagnostic | ( |
| RP11 | ↑ | Tissue | Therapeutic | ( |
| KAT7 | ↓ | Tissue/Cell lines | Diagnostic/Therapeutic | ( |
| TINCR | ↑ | Tissue/Cell lines | Diagnostic/Prognostic | ( |
| GIHCG | ↑ | Tissue/Cell lines | Prognostic/Therapeutic | ( |
| LUCAT1 | ↑ | Tissue/Cell lines | Prognostic/Therapeutic | ( |
| ENST00000547547 | ↓ | Tissue/Cell lines | Prognostic/Diagnostic | ( |
| MLK7–AS1 | ↑ | Tissue/Cell lines | Diagnostic/Therapeutic | ( |
| MAPKAPK5-AS1 | ↑ | Tissue/Cell lines | Prognostic/Therapeutic | ( |
| SNHG15 | ↑ | Tissue | Prognostic | ( |
| RP1–85F18.6 | ↑ | Tissue/Cell lines | Diagnostic/Prognostic | ( |
| NONHSAT074176.2 | ↓ | Tissue | Diagnostic/Therapeutic | ( |
| DLEU1 | ↑ | Tissue/Cell lines | Therapeutic | ( |
| CYTOR | ↑ | Tissue | Prognostic/Therapeutic | ( |
| SPINT1-AS1 | ↑ | Tissue/Serum exosomes | Prognostic/Therapeutic | ( |
| u50535 | ↑ | Tissue/Cell lines | Diagnostic/Prognostic | ( |
| RP11-909B2.1 | ↓ | Tissue/Cell lines | Diagnostic/Prognostic | ( |
| AK098783 | ↑ | Tissue | Prognostic | ( |
| XLOC_010588 | ↑ | Tissue/Cell lines | Diagnostic/Prognostic/Therapeutic | ( |
| 91H | ↑ | Serum exosomes | Diagnostic/Prognostic/Therapeutic | ( |
| SNHG1 | ↑ | Tissue/Cell lines | Diagnostic/Therapeutic | ( |
| LINC00959 | ↓ | Tissue/Cell lines | Prognostic | ( |
| GHRLOS | ↓ | Tissue | Prognostic/Therapeutic | ( |
| CPS1-IT1 | ↓ | Tissue/Cell lines | Prognostic/Therapeutic | ( |
| HNF1A-AS1 | ↑ | Tissue/Cell lines | Prognostic/Therapeutic | ( |
| HOXA-AS2 | ↑ | Tissue/Cell lines | Diagnostic/Therapeutic | ( |
| HEIH | ↑ | Tissue/Cell lines | Prognostic/Therapeutic | ( |
| NONHSAT062994 | ↓ | Tissue/Cell lines | Prognostic/Therapeutic | ( |
| BANCR | ↑ | Tissue | Prognostic | ( |
| LL22NC03-N64E9.1 | ↑ | Tissue/Cell lines | Prognostic/Therapeutic | ( |
| ZEB1-AS1 | ↑ | Tissue/Cell lines | Prognostic | ( |
| BCAT1 | ↓ | Tissue/Cell lines | Prognostic | ( |
| BLACAT1 | ↑ | Tissue/Cell lines | Diagnostic/Therapeutic | ( |
| UBC1 | ↑ | Tissue/Cell lines | Diagnostic | ( |
| SNHG12 | ↑ | Tissue/Cell lines | Diagnostic/Prognostic | ( |
| SPRY4-IT1 | ↑ | Tissue | Prognostic | ( |
| HOXA11-AS | ↓ | Tissue/Cell lines | Prognostic/Therapeutic | ( |
| CRNDE-h | ↑ | Serum exosomes | Diagnostic/Prognostic | ( |
| Loc554202 | ↓ | Tissue | Prognostic | ( |
| FOXP4-AS1 | ↑ | Tissue/Cell lines | Prognostic/Therapeutic | ( |
| HOTAIRM1 | ↓ | Tissue/Cell lines | Diagnostic | ( |
| CTNNAP1 | ↓ | Tissue | Diagnostic | ( |
| LINC01133 | ↓ | Tissue/Cell lines | Prognostic/Therapeutic | ( |
| CASC11 | ↑ | Tissue/Cell lines | Diagnostic/Therapeutic | ( |
| TUG1 | ↑ | Tissue/Cell lines | Diagnostic/Prognostic/Therapeutic | ( |
| PRNCR1 | ↑ | Tissue/Cell lines | Diagnostic | ( |
| ATB | ↑ | Plasma | Diagnostic/Prognostic | ( |
References showed in .
circRNAs as biomarkers for the diagnosis and prognosis of CRC.
| CircRNAs | Targeted miRNA | Regulatory Role of circRNA on miRNA | The expression of circRNA | Potential biomarkers | Reference |
|---|---|---|---|---|---|
| circSMARCC1 | miR-140-3p | Negative | ↑ | Therapeutic | ( |
| hsa-miR-6833- | ( | ||||
| circ-PNN | 3p/hsa-let-7i-3p/hsa-miR-1301-3p | Negative | ↑ | Diagnostic | |
| circRNA_101951 | / | / | ↑ | Prognostic/Therapeutic | ( |
| circPTK2 | / | / | ↑ | Diagnostic/Therapeutic | ( |
| circCAMSAP1 | miR-328-5p | Negative | ↑ | Prognostic/Diagnostic/Therapeutic | ( |
| circ-0004771 | / | / | ↑ | Diagnostic | ( |
| circ_0000338 | / | / | ↑ | Therapeutic | ( |
| hsa_circ_0082182 | ↑ | ||||
| Diagnostic | ( | ||||
| hsa_circ_0000370 hsa_circ_0035445 | / | / | ↑↓ | ||
| circ-CCDC66 | ↓ | ( | |||
| circ-ABCC1 circ-STIL | / | / | ↓↓ | Diagnostic | |
| circ-ITGA7 | miR-3187-3p | Negative | ↓ | Diagnostic/Therapeutic | ( |
| hsa_circ_0004585 | Multiple | / | ↑ | Diagnostic/Therapeutic | ( |
| hsa_circ_0142527 | / | / | ↓ | Diagnostic | ( |
| circVAPA | miR-101 | Negative | ↑ | Diagnostic/Therapeutic | ( |
| circDDX17 | hsa-miR-21-5p | Negative | ↓ | Diagnostic/Therapeutic | ( |
| circ_0026344 | miR-21/miR-31 | Negative | ↓ | Prognostic | ( |
| circHIPK3 | miR-7 | Negative | ↑ | Prognostic/Therapeutic | ( |
| hsa_circ_0007534 | / | / | ↑ | Diagnostic/Prognostic | ( |
| circRNA0003906 | / | / | ↓ | Diagnostic/Therapeutic | ( |
| hsa_circRNA_103809 | / | / | ↓ | Diagnostic | ( |
| hsa_circRNA_104700 | ↓ | ||||
| circRNA_001569 | miR-145 | Negative | ↑ | Therapeutic | ( |
| hsa_circ_0005075 | / | / | ↑ | Diagnostic/Therapeutic | ( |
| hsa_circ_0020397 | miR-138 | Negative | ↑ | Therapeutic | ( |
| hsa_circ_0136666 | miR-136 | Negative | ↑ | Therapeutic | ( |
| hsa_circ_0000523 | miR-31 | Negative | ↓ | Therapeutic | ( |
| has_circ_0055625 | miR‐106b‐5p | Negative | ↑ | Therapeutic/Prognostic | ( |
| circ_104916 | / | / | ↓ | Therapeutic/Prognostic | ( |
| hsa_circ_0000423 | / | / | ↑ | Therapeutic/Prognostic | ( |
| hsa_circ_0001649 | / | / | ↓ | Diagnostic | ( |
| hsa_circ_0000567 | / | / | ↓ | Diagnostic/Prognostic | ( |
| hsa_circ_0000826 | / | / | ↓ | Diagnostic/Therapeutic | ( |
| circ-FBXW7 | / | / | ↓ | Therapeutic | ( |
| circMTO1 | / | / | ↓ | Therapeutic/Prognostic | ( |
| circ_0002138 | / | / | ↓ | Diagnostic/Therapeutic | ( |
| hsa_circ_0002320 | / | / | ↓ | Diagnostic/Prognostic | ( |
| hsa_circ_0000711 | / | / | ↓ | Diagnostic/Prognostic | ( |
| circLMNB1 | / | / | ↑ | Therapeutic | ( |
| circFADS2 | / | / | ↑ | Therapeutic/Prognostic | ( |
| circUBAP2 | miR-199a | Negative | ↑ | Therapeutic | ( |
| hsa_circ_0044556 | hsa-mir-214-3p | Negative | ↑ | Diagnostic/Therapeutic/Prognostic | ( |
| circVAPA | miR-125a | Negative | ↑ | Therapeutic | ( |
| circHUWE1 | miR-486 | Negative | ↑ | Diagnostic/Therapeutic | ( |
| circMBOAT2 | miR-519d-3p | Negative | ↑ | Diagnostic/Prognostic | ( |
References showed in .
snoRNA as potential biomarker for colorectal cancer.
| Cancer | snoRNA | Expression | Sample | Potential biomarker | Function of RNA | Reference |
|---|---|---|---|---|---|---|
| Colorectal cancer | SNORA42 | ↑ | Tissue/Cell lines | Prognostic | Oncogene | ( |
| Colorectal cancer | SNORA21 | ↑ | Tissue/Cell lines | Diagnostic/Prognostic/Therapeutic | Oncogene | ( |
| Hepatocellular carcinoma/Colorectal cancer | SNORD126 | ↑ | Tissue | Therapeutic | Oncogene | ( |
| Hepatocellular carcinoma | SNORACA11 | ↑ | Tissue/Cell lines | Prognostic/Therapeutic | Oncogene | ( |
| Lung carcinoma | SNORA71A | ↑ | Tissue | Prognostic/Therapeutic | Oncogene | ( |
| Gastric carcinoma | SNORD105b | ↑ | Tissue | Prognostic/Therapeutic | Oncogene | ( |
| Breast carcinoma | SNORA7B | ↑ | Tissue/Cell lines | Diagnostic/Prognostic | Oncogene | ( |
| Prostate cancer | SNORA42 | ↑ | Tissue/Cell lines | Diagnostic/Prognostic | Oncogene | ( |
References showed in .
piRNAs as potential biomarker for colorectal cancer.
| piRNA | Expression | Sample | Biomarker | Reference |
|---|---|---|---|---|
| piR-1245 | ↑ | Tissue | Prognostic | ( |
| piR-001311piR-004153 | ||||
| piR-017723piR-017724piR-020365 | ↓ | Serum | Diagnostic/Prognostic | ( |
| piR-823 | ↑ | Tissue | Prognostic/Therapeutic | ( |
| piR-020619piR-020450 | ↑ | Serum | Diagnostic | ( |
| piR-24000 | ↑ | Tissue | Diagnostic/Therapeutic | ( |
| piR-54265 | ↑ | Tissue/Cell lines | Therapeutic/Prognostic | ( |
References showed in .
Figure 1Biomarkers (mRNAs and non-coding RNAs) for the diagnosis and prognosis of colorectal cancer.