| Literature DB >> 33995432 |
Yiqi Huang1, Jie Li1,2, Rui Yang1,2, Fukuan Wang1,2, Yanzhou Li1, Shuo Zhang3, Fanghao Wan2, Xi Qiao1,2,4, Wanqiang Qian2.
Abstract
Mile-a-minute weed (Mikania micrantha Kunth) is considered as one of top 100 most dangerous invasive species in the world. A fast and accurate detection technology will be needed to identify M. micrantha. It will help to mitigate the extensive ecologic and economic damage on our ecosystems caused by this alien plant. Hyperspectral technology fulfills the above requirement. However, when working with hyperspectral images, preprocessing, dimension reduction, and classifier are fundamental to achieving reliable recognition accuracy and efficiency. The spectral data of M. micrantha were collected using hyperspectral imaging in the spectral range of 450-998 nm. A different combination of preprocessing methods, principal component analysis (for dimension reduction), and three classifiers were used to analyze the collected hyperspectral images. The results showed that a combination of Savitzky-Golay (SG) smoothing, principal component analysis (PCA), and random forest (RF) achieved an accuracy (A) of 88.71%, an average accuracy (AA) of 88.68%, and a Kappa of 0.7740 with an execution time of 9.647 ms. In contrast, the combination of SG, PCA and a support vector machine (SVM) resulted in a weaker performance in terms of A (84.68%), AA(84.66%), and Kappa (0.6934), but with less execution time (1.318 ms). According to the requirements for specific identification accuracy and time cost, SG-PCA-RF and SG-PCA-SVM might represent two promising methods for recognizing M. micrantha in the wild.Entities:
Keywords: classification; data preprocessing; dimension reduction; hyperspectral analysis; invasive plant
Year: 2021 PMID: 33995432 PMCID: PMC8119880 DOI: 10.3389/fpls.2021.626516
Source DB: PubMed Journal: Front Plant Sci ISSN: 1664-462X Impact factor: 5.753
FIGURE 1Representative hyperspectral images of Mikania micrantha and background.
FIGURE 2Extraction of raw spectral data. (A) Pixels of hyperspectral images used for raw spectra extraction, (B) raw spectral data.
FIGURE 3Framework of the proposed methods implementation.
FIGURE 4Raw and preprocessed spectral data of 745 samples (A) raw spectral data, preprocessed by (B) 9P smoothing, (C) SG smoothing, (D) first derivative, (E) second derivative, and (F) standard normal variate.
FIGURE 5First and second principal component scores of 745 samples based on (A) raw spectral data, preprocessed by (B) 9P smoothing, (C) SG smoothing, (D) first derivative, (E) second derivative, and (F) standard normal variate.
FIGURE 6Cumulative contribution rate curve of the principal components.
FIGURE 7Recognition accuracy curve of Mikania micrantha based on the first k principal components. (A) raw spectral data, preprocessed by (B) 9P smoothing, (C) SG smoothing, (D) first derivative, (E) second derivative, and (F) standard normal variate.
First k principal components corresponding to the maximum accuracy of each combination method.
| PCA-SVM | 5/88.80 | 16/88.00 | 17/88.80 | 26/88.00 | 8/88.80 | 10/88.00 |
| PCA-BPNN | 127/87.20 | 10/89.60 | 5/88.00 | 66/84.80 | 99/80.80 | 2/84.00 |
| PCA-RF | 11/88.80 | 15/89.60 | 14/90.40 | 11/90.40 | 19/91.20 | 105/90.40 |
Methods combining preprocessing, PCA, and a classifier for validation set recognition.
| RSD-PCA-SVM | 5 | 81.45 | 81.62 | 0.6302 | 0.963 |
| RSD-PCA-BPNN | 127 | 78.23 | 78.13 | 0.5636 | 6.169 |
| RSD-PCA-RF | 11 | 83.87 | 83.84 | 0.6772 | 10.275 |
| 9P-PCA-SVM | 16 | 83.87 | 83.81 | 0.6770 | |
| 9P-PCA-BPNN | 10 | 75.81 | 75.77 | 0.5158 | 6.082 |
| 9P-PCA-RF | 15 | 84.68 | 84.63 | 0.6932 | 10.028 |
| SG-PCA-SVM | 17 | 84.68 | 84.66 | 0.6934 | 1.318 |
| SG-PCA-BPNN | 5 | 81.45 | 81.46 | 0.6290 | 5.575 |
| SG-PCA-RF | 14 | 9.647 | |||
| FD-PCA-SVM | 26 | 80.65 | 80.69 | 0.6132 | 1.115 |
| FD-PCA-BPNN | 66 | 70.97 | 70.99 | 0.4195 | 5.332 |
| FD-PCA-RF | 11 | 83.87 | 83.89 | 0.6775 | 10.571 |
| SD-PCA-SVM | 8 | 79.84 | 79.98 | 0.5978 | 1.014 |
| SD-PCA-BPNN | 99 | 72.58 | 72.50 | 0.4506 | 6.033 |
| SD-PCA-RF | 19 | 86.29 | 86.20 | 0.7252 | 10.653 |
| SNV-PCA-SVM | 10 | 81.45 | 81.49 | 0.6292 | 1.305 |
| SNV-PCA-BPNN | 2 | 82.26 | 82.31 | 0.6454 | 5.533 |
| SNV-PCA-RF | 105 | 85.48 | 85.51 | 0.7098 | 10.431 |
Methods combining preprocessing with a classifier for validation set recognition.
| RSD-SVM | 81.45 | 81.38 | 0.6285 | |
| RSD-BPNN | 66.94 | 66.94 | 0.3387 | 5.963 |
| RSD-RF | 83.06 | 82.92 | 0.6602 | 12.665 |
| 9P-SVM | 82.26 | 82.18 | 0.6445 | 3.146 |
| 9P-BPNN | 71.77 | 71.86 | 0.4364 | 5.857 |
| 9P-RF | 83.87 | 83.81 | 0.6770 | 9.616 |
| SG-SVM | 83.37 | 83.79 | 0.6768 | 1.900 |
| SG-BPNN | 71.77 | 71.86 | 0.4364 | 6.795 |
| SG-RF | 84.68 | 84.56 | 0.6927 | 9.350 |
| FD-SVM | 83.06 | 83.02 | 0.6609 | 2.049 |
| FD-BPNN | 77.42 | 77.39 | 0.5480 | 30.801 |
| FD-RF | 85.48 | 85.48 | 0.7096 | 9.329 |
| SD-SVM | 81.45 | 81.49 | 0.6292 | 21.212 |
| SD-BPNN | 80.65 | 80.64 | 0.6128 | 10.110 |
| SD-RF | 86.29 | 86.22 | 0.7254 | 10.605 |
| SNV-SVM | 82.26 | 82.33 | 0.6456 | 11.373 |
| SNV-BPNN | 71.77 | 71.78 | 0.4355 | 17.394 |
| SNV-RF | 12.048 | |||