Literature DB >> 33990992

On the robustness of latent class models for diagnostic testing with no gold standard.

Matthew R Schofield1, Michael J Maze2,3, John A Crump4, Matthew P Rubach5, Renee Galloway6, Katrina J Sharples1.   

Abstract

It is difficult to estimate sensitivity and specificity of diagnostic tests when there is no gold standard. Latent class models have been proposed as a potential solution as they provide estimates without the need for a gold standard. Using a motivating example of the evaluation of point of care tests for leptospirosis in Tanzania, we show how a realistic violation of assumptions underpinning the latent class model can lead directly to substantial bias in the estimates of the parameters of interest. In particular, we consider the robustness of estimates of sensitivity, specificity, and prevalence, to the presence of additional latent states when fitting a two-state latent class model. The violation is minor in the sense that it cannot be routinely detected with goodness-of-fit procedures, but is major with regard to the resulting bias.
© 2021 John Wiley & Sons Ltd. This article has been contributed to by US Government employees and their work is in the public domain in the USA.

Entities:  

Keywords:  Bayes; leptospirosis; model sensitivity; sensitivity; specificity

Mesh:

Year:  2021        PMID: 33990992      PMCID: PMC8440412          DOI: 10.1002/sim.8999

Source DB:  PubMed          Journal:  Stat Med        ISSN: 0277-6715            Impact factor:   2.497


  18 in total

1.  Methods for evaluating the performance of diagnostic tests in the absence of a gold standard: a latent class model approach.

Authors:  Elizabeth S Garrett; William W Eaton; Scott Zeger
Journal:  Stat Med       Date:  2002-05-15       Impact factor: 2.373

Review 2.  Latent class models in diagnostic studies when there is no reference standard--a systematic review.

Authors:  Maarten van Smeden; Christiana A Naaktgeboren; Johannes B Reitsma; Karel G M Moons; Joris A H de Groot
Journal:  Am J Epidemiol       Date:  2013-11-21       Impact factor: 4.897

3.  Random effects models in latent class analysis for evaluating accuracy of diagnostic tests.

Authors:  Y Qu; M Tan; M H Kutner
Journal:  Biometrics       Date:  1996-09       Impact factor: 2.571

4.  Diagnostic Test Accuracy in Childhood Pulmonary Tuberculosis: A Bayesian Latent Class Analysis.

Authors:  Samuel G Schumacher; Maarten van Smeden; Nandini Dendukuri; Lawrence Joseph; Mark P Nicol; Madhukar Pai; Heather J Zar
Journal:  Am J Epidemiol       Date:  2016-10-13       Impact factor: 4.897

5.  Nested partially latent class models for dependent binary data; estimating disease etiology.

Authors:  Zhenke Wu; Maria Deloria-Knoll; Scott L Zeger
Journal:  Biostatistics       Date:  2017-04-01       Impact factor: 5.899

6.  On the robustness of N-mixture models.

Authors:  William A Link; Matthew R Schofield; Richard J Barker; John R Sauer
Journal:  Ecology       Date:  2018-06-06       Impact factor: 5.499

Review 7.  Point of care testing for infectious diseases.

Authors:  Hui Chen; Kengku Liu; Zhao Li; Ping Wang
Journal:  Clin Chim Acta       Date:  2019-03-08       Impact factor: 3.786

8.  Diagnosis of Leptospirosis: Comparison between Microscopic Agglutination Test, IgM-ELISA and IgM Rapid Immunochromatography Test.

Authors:  Roshan Niloofa; Narmada Fernando; Nipun Lakshitha de Silva; Lilani Karunanayake; Hasith Wickramasinghe; Nandana Dikmadugoda; Gayani Premawansa; Rajitha Wickramasinghe; H Janaka de Silva; Sunil Premawansa; Senaka Rajapakse; Shiroma Handunnetti
Journal:  PLoS One       Date:  2015-06-18       Impact factor: 3.240

9.  Fool's gold: Why imperfect reference tests are undermining the evaluation of novel diagnostics: a reevaluation of 5 diagnostic tests for leptospirosis.

Authors:  Direk Limmathurotsakul; Elizabeth L Turner; Vanaporn Wuthiekanun; Janjira Thaipadungpanit; Yupin Suputtamongkol; Wirongrong Chierakul; Lee D Smythe; Nicholas P J Day; Ben Cooper; Sharon J Peacock
Journal:  Clin Infect Dis       Date:  2012-04-20       Impact factor: 9.079

10.  Partially latent class models for case-control studies of childhood pneumonia aetiology.

Authors:  Zhenke Wu; Maria Deloria-Knoll; Laura L Hammitt; Scott L Zeger
Journal:  J R Stat Soc Ser C Appl Stat       Date:  2015-03-26       Impact factor: 1.864

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  4 in total

1.  Rejoinder to "On the robustness of latent class models for diagnostic testing with no gold standard".

Authors:  Matthew R Schofield; Michael J Maze; John A Crump; Matthew P Rubach; Renee L Galloway; Katrina J Sharples
Journal:  Stat Med       Date:  2021-09-30       Impact factor: 2.497

2.  Bayesian latent class analysis produced diagnostic accuracy estimates that were more interpretable than composite reference standards for extrapulmonary tuberculosis tests.

Authors:  Emily L MacLean; Mikashmi Kohli; Lisa Köppel; Ian Schiller; Surendra K Sharma; Madhukar Pai; Claudia M Denkinger; Nandini Dendukuri
Journal:  Diagn Progn Res       Date:  2022-06-16

Review 3.  Role of Diagnostics in Epidemiology, Management, Surveillance, and Control of Leptospirosis.

Authors:  Jane E Sykes; Krystle L Reagan; Jarlath E Nally; Renee L Galloway; David A Haake
Journal:  Pathogens       Date:  2022-03-24

4.  Performance of saliva compared with nasopharyngeal swab for diagnosis of COVID-19 by NAAT in cross-sectional studies: Systematic review and meta-analysis.

Authors:  Donald Brody Duncan; Katharine Mackett; Muhammad Usman Ali; Deborah Yamamura; Cynthia Balion
Journal:  Clin Biochem       Date:  2022-08-08       Impact factor: 3.625

  4 in total

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