Literature DB >> 33986153

A prometastatic splicing program regulated by SNRPA1 interactions with structured RNA elements.

Lisa Fish1,2,3,4, Matvei Khoroshkin1,2,3,4, Albertas Navickas1,2,3,4, Kristle Garcia1,2,3,4, Bruce Culbertson1,2,3,4, Benjamin Hänisch1,2,3,4, Steven Zhang1,2,3,4, Hoang C B Nguyen5, Larisa M Soto6,7, Maria Dermit8, Faraz K Mardakheh8, Henrik Molina9, Claudio Alarcón10,11, Hamed S Najafabadi6,7, Hani Goodarzi12,2,3,4.   

Abstract

Aberrant alternative splicing is a hallmark of cancer, yet the underlying regulatory programs that control this process remain largely unknown. Here, we report a systematic effort to decipher the RNA structural code that shapes pathological splicing during breast cancer metastasis. We discovered a previously unknown structural splicing enhancer that is enriched near cassette exons with increased inclusion in highly metastatic cells. We show that the spliceosomal protein small nuclear ribonucleoprotein polypeptide A' (SNRPA1) interacts with these enhancers to promote cassette exon inclusion. This interaction enhances metastatic lung colonization and cancer cell invasion, in part through SNRPA1-mediated regulation of PLEC alternative splicing, which can be counteracted by splicing modulating morpholinos. Our findings establish a noncanonical regulatory role for SNRPA1 as a prometastatic splicing enhancer in breast cancer.
Copyright © 2021 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

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Year:  2021        PMID: 33986153      PMCID: PMC8238114          DOI: 10.1126/science.abc7531

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  65 in total

1.  Global quantification of mammalian gene expression control.

Authors:  Björn Schwanhäusser; Dorothea Busse; Na Li; Gunnar Dittmar; Johannes Schuchhardt; Jana Wolf; Wei Chen; Matthias Selbach
Journal:  Nature       Date:  2011-05-19       Impact factor: 49.962

2.  U2 as well as U1 small nuclear ribonucleoproteins are involved in premessenger RNA splicing.

Authors:  D L Black; B Chabot; J A Steitz
Journal:  Cell       Date:  1985-10       Impact factor: 41.582

3.  Metastasis-suppressor transcript destabilization through TARBP2 binding of mRNA hairpins.

Authors:  Hani Goodarzi; Steven Zhang; Colin G Buss; Lisa Fish; Saeed Tavazoie; Sohail F Tavazoie
Journal:  Nature       Date:  2014-07-09       Impact factor: 49.962

Review 4.  Regulation of epidermal growth factor receptor signalling by inducible feedback inhibitors.

Authors:  Oreste Segatto; Sergio Anastasi; Stefano Alemà
Journal:  J Cell Sci       Date:  2011-06-01       Impact factor: 5.285

Review 5.  RNA structure and the mechanisms of alternative splicing.

Authors:  C Joel McManus; Brenton R Graveley
Journal:  Curr Opin Genet Dev       Date:  2011-04-27       Impact factor: 5.578

6.  The human U1 snRNP-specific U1A protein inhibits polyadenylation of its own pre-mRNA.

Authors:  W C Boelens; E J Jansen; W J van Venrooij; R Stripecke; I W Mattaj; S I Gunderson
Journal:  Cell       Date:  1993-03-26       Impact factor: 41.582

7.  RNA Bind-n-Seq: quantitative assessment of the sequence and structural binding specificity of RNA binding proteins.

Authors:  Nicole Lambert; Alex Robertson; Mohini Jangi; Sean McGeary; Phillip A Sharp; Christopher B Burge
Journal:  Mol Cell       Date:  2014-05-15       Impact factor: 17.970

8.  Systematic discovery of structural elements governing stability of mammalian messenger RNAs.

Authors:  Hani Goodarzi; Hamed S Najafabadi; Panos Oikonomou; Todd M Greco; Lisa Fish; Reza Salavati; Ileana M Cristea; Saeed Tavazoie
Journal:  Nature       Date:  2012-04-08       Impact factor: 49.962

9.  A massively parallel 3' UTR reporter assay reveals relationships between nucleotide content, sequence conservation, and mRNA destabilization.

Authors:  Adam J Litterman; Robin Kageyama; Olivier Le Tonqueze; Wenxue Zhao; John D Gagnon; Hani Goodarzi; David J Erle; K Mark Ansel
Journal:  Genome Res       Date:  2019-05-31       Impact factor: 9.043

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  7 in total

Review 1.  Impacts and mechanisms of alternative mRNA splicing in cancer metabolism, immune response, and therapeutics.

Authors:  Qiu Peng; Yujuan Zhou; Linda Oyang; Nayiyuan Wu; Yanyan Tang; Min Su; Xia Luo; Ying Wang; Xiaowu Sheng; Jian Ma; Qianjin Liao
Journal:  Mol Ther       Date:  2021-11-15       Impact factor: 11.454

2.  U1A is a positive regulator of the expression of heterologous and cellular genes involved in cell proliferation and migration.

Authors:  Eric Rovira; Beatriz Moreno; Nerea Razquin; Roland Hjerpe; Monika Gonzalez-Lopez; Rosa Barrio; Igor Ruiz de Los Mozos; Jernej Ule; Fernando Pastor; Lorea Blazquez; Puri Fortes
Journal:  Mol Ther Nucleic Acids       Date:  2022-05-10       Impact factor: 10.183

3.  Identifying drivers of breast cancer metastasis in progressively invasive subpopulations of zebrafish-xenografted MDA-MB-231.

Authors:  Jerry Xiao; Joseph R McGill; Apsra Nasir; Alexander Lekan; Bailey Johnson; Devan J Wilkins; Gray W Pearson; Kandice Tanner; Hani Goodarzi; Eric Glasgow; Richard Schlegel; Seema Agarwal
Journal:  Mol Biomed       Date:  2022-05-26

Review 4.  Alternative Splicing: A New Cause and Potential Therapeutic Target in Autoimmune Disease.

Authors:  Pingping Ren; Luying Lu; Shasha Cai; Jianghua Chen; Weiqiang Lin; Fei Han
Journal:  Front Immunol       Date:  2021-08-17       Impact factor: 7.561

Review 5.  Plectin in Cancer: From Biomarker to Therapeutic Target.

Authors:  Samantha M Perez; Lindsey T Brinton; Kimberly A Kelly
Journal:  Cells       Date:  2021-08-30       Impact factor: 6.600

6.  Elevated SNRPA1, as a Promising Predictor Reflecting Severe Clinical Outcome via Effecting Tumor Immunity for ccRCC, Is Related to Cell Invasion, Metastasis, and Sunitinib Sensitivity.

Authors:  Aimin Jiang; Jialin Meng; Wenliang Gong; Zhonghua Zhang; Xinxin Gan; Jie Wang; Zhenjie Wu; Bing Liu; Le Qu; Linhui Wang
Journal:  Front Immunol       Date:  2022-02-23       Impact factor: 7.561

7.  Pan-cancer analysis of mRNA stability for decoding tumour post-transcriptional programs.

Authors:  Gabrielle Perron; Pouria Jandaghi; Elham Moslemi; Tamiko Nishimura; Maryam Rajaee; Rached Alkallas; Tianyuan Lu; Yasser Riazalhosseini; Hamed S Najafabadi
Journal:  Commun Biol       Date:  2022-08-20
  7 in total

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