Literature DB >> 33979151

dHis-troying Barriers: Deuteration Provides a Pathway to Increase Sensitivity and Accessible Distances for Cu2+ Labels.

Joshua Casto1, Alysia Mandato1, Sunil Saxena1.   

Abstract

Recently, site-directed Cu2+ labeling has emerged as an incisive biophysical tool to directly report on distance constraints that pertain to the structure, conformational transitions, and dynamics of proteins and nucleic acids. However, short phase memory times inherent to the Cu2+ labels limit measurable distances to 4-5 nm. In this work we systematically examine different methods to dampen electron-nuclear and electron-electron coupled interactions to decrease rapid relaxation. We show that using Cu2+ spin concentrations up to ca. 800 μM has an invariant effect on relaxation and that increasing the cryoprotectant concentration reduces contributions of solvent protons to relaxation. On the other hand, the deuteration of protein and solvent dramatically increases the duration of the dipolar modulated signal by over 6-fold to 32 μs. Based on this increase in signal longevity, distances up to 9 nm and beyond can potentially be measured with Cu2+ labels.

Entities:  

Year:  2021        PMID: 33979151     DOI: 10.1021/acs.jpclett.1c01002

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  3 in total

1.  Copper Based Site-directed Spin Labeling of Proteins for Use in Pulsed and Continuous Wave EPR Spectroscopy.

Authors:  Kevin Singewald; James A Wilkinson; And Sunil Saxena
Journal:  Bio Protoc       Date:  2021-12-20

2.  Beyond structure: Deciphering site-specific dynamics in proteins from double histidine-based EPR measurements.

Authors:  Kevin Singewald; James A Wilkinson; Zikri Hasanbasri; Sunil Saxena
Journal:  Protein Sci       Date:  2022-07       Impact factor: 6.993

3.  Cu(ii)-based DNA labeling identifies the structural link between transcriptional activation and termination in a metalloregulator.

Authors:  Joshua Casto; Alysia Mandato; Lukas Hofmann; Idan Yakobov; Shreya Ghosh; Sharon Ruthstein; Sunil Saxena
Journal:  Chem Sci       Date:  2022-01-17       Impact factor: 9.825

  3 in total

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