Literature DB >> 33977483

Using BioID to Characterize the RAS Interactome.

Hema Adhikari1, Christopher M Counter2,3.   

Abstract

Identifying the proteins that associate with RAS oncoproteins has great potential, not only to elucidate how these mutant proteins are regulated and signal but also to identify potential therapeutic targets. Here we describe a detailed protocol to employ proximity labeling by the BioID methodology, which has the advantage of capturing weak or transient interactions, to identify in an unbiased manner those proteins within the immediate vicinity of oncogenic RAS proteins.

Entities:  

Keywords:  BioID; BirA; HRAS; Interactome; KRAS; NRAS; Proximity labeling

Mesh:

Substances:

Year:  2021        PMID: 33977483      PMCID: PMC8251342          DOI: 10.1007/978-1-0716-1190-6_16

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  7 in total

1.  Creation of human tumour cells with defined genetic elements.

Authors:  W C Hahn; C M Counter; A S Lundberg; R L Beijersbergen; M W Brooks; R A Weinberg
Journal:  Nature       Date:  1999-07-29       Impact factor: 49.962

2.  Function of a conserved sequence motif in biotin holoenzyme synthetases.

Authors:  K Kwon; D Beckett
Journal:  Protein Sci       Date:  2000-08       Impact factor: 6.725

3.  A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells.

Authors:  Kyle J Roux; Dae In Kim; Manfred Raida; Brian Burke
Journal:  J Cell Biol       Date:  2012-03-12       Impact factor: 10.539

Review 4.  Meet the neighbors: Mapping local protein interactomes by proximity-dependent labeling with BioID.

Authors:  Renata Varnaitė; Stuart A MacNeill
Journal:  Proteomics       Date:  2016-07-27       Impact factor: 3.984

5.  Interrogating the protein interactomes of RAS isoforms identifies PIP5K1A as a KRAS-specific vulnerability.

Authors:  Hema Adhikari; Christopher M Counter
Journal:  Nat Commun       Date:  2018-09-07       Impact factor: 14.919

6.  Efficient proximity labeling in living cells and organisms with TurboID.

Authors:  Tess C Branon; Justin A Bosch; Ariana D Sanchez; Namrata D Udeshi; Tanya Svinkina; Steven A Carr; Jessica L Feldman; Norbert Perrimon; Alice Y Ting
Journal:  Nat Biotechnol       Date:  2018-08-20       Impact factor: 54.908

Review 7.  Recent advances in proximity-based labeling methods for interactome mapping.

Authors:  Laura Trinkle-Mulcahy
Journal:  F1000Res       Date:  2019-01-31
  7 in total
  1 in total

1.  Oncogenic KRAS is dependent upon an EFR3A-PI4KA signaling axis for potent tumorigenic activity.

Authors:  Hema Adhikari; Walaa E Kattan; Shivesh Kumar; Pei Zhou; John F Hancock; Christopher M Counter
Journal:  Nat Commun       Date:  2021-09-09       Impact factor: 17.694

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.