| Literature DB >> 33977031 |
Renuka Pudi Limgala1, Vyacheslav Furtak1, Margarita M Ivanova1, Erk Changsila1, Floyd Wilks2, Marie N Fidelia-Lambert3, Ozlem Goker-Alpan1, Marjorie C Gondré-Lewis2.
Abstract
Population studies point to regional and ethnicity-specific differences in genetic predisposition for some lysosomal storage disorders (LSDs). The aim of the study was to determine the prevalence of the three treatable forms of lysosomal storage disorders (Gaucher disease [GD], Pompe disease [PD], and Fabry disease [FD]) in a cohort of mostly urban-dwelling individuals of African ancestry, a previously unknown genetic landscape for LSDs. Large-scale selective multistep biochemical and genetic screening was performed in patients seeking healthcare for various health concerns. Fluorimetric enzyme assays for GD, PD, and FD were performed on dried blood spots. Targeted gene sequencing was performed on samples that showed significantly lower enzyme activities (<10% of control mean) after two tiers of enzymatic screening. A total of 5287 unique samples representing a cross section of patients who visited Howard University Hospital and College of Medicine from 2015 to 2017 were included in the study. Study samples were obtained from a population where ~90% reported as African-American, ~5% Hispanic, and <5% Caucasian or other. Regarding GD, three subjects had either homozygous or heterozygous mutations in the GBA gene. As to PD, eight subjects were either homozygous or compound heterozygous for GAA mutations, including three novel mutations: (a) c.472 A > G; p.T158A, (b) c.503G > T; p.R168L, (c) c.1985del. Regarding FD, two subjects had pathogenic GLA mutations, and four had single nucleotide polymorphisms in the 5'UTR, previously implicated in modulating gene expression. The findings highlight a higher incidence of abnormal enzyme levels and pathogenic mutations in the target population reflecting ancestry-based specific genotype and phenotype variations.Entities:
Keywords: African‐Americans; Fabry disease; Gaucher disease; Pompe disease; large‐scale screening; lysosomal storage disorders
Year: 2021 PMID: 33977031 PMCID: PMC8100401 DOI: 10.1002/jmd2.12201
Source DB: PubMed Journal: JIMD Rep ISSN: 2192-8304
FIGURE 1Description of the screening protocol. For each sample, blood was spotted onto Protein Saver and Flinders Technology Associates (FTA) cards and allowed to dry. Dried blood spots (DBS) from ProteinSaver cards underwent two tiers of enzyme assays. For samples with abnormal enzyme activity, DBS from the corresponding FTA cards were used for molecular analysis. Number of samples and percentage of total samples is indicated at each step. nGD, number of samples screened for Gaucher disease; nPD, number of samples screened for Pompe disease; nFD, number of samples screened for Fabry disease; * Hemizygous
FIGURE 2Results of enzyme assay screening. Fluorimetric enzyme assays were performed on screen and control cohorts and results were plotted as nmol of 4MU released/hour/mL of blood. The number of samples in each cohort is indicated. 4MU, 4‐methylumbelliferone; GD, Gaucher disease; PD, Pompe disease; FD, Fabry disease
Statistical analysis of enzyme activities. Fluorimetric enzyme assays were performed on screen and control cohorts and statistical analyses for each enzyme activity are summarized
| # of samples | Minimum | Maximum | Median | 1% percentile | 99% percentile | Mean | SD | SEM | |
|---|---|---|---|---|---|---|---|---|---|
| β‐Glucocerebrosidase | |||||||||
| Screen | 5287 | 0 | 117 | 3.9 | 0.99 | 43 | 6.3 | 7.9 | 0.11 |
| GD | 25 | 0 | 0.57 | 0 | 0 | 0.57 | 0.04 | 0.13 | 0.025 |
| GD carrier | 25 | 0.25 | 1.5 | 0.83 | 0.25 | 1.5 | 0.81 | 0.32 | 0.064 |
| Non‐GD | 60 | 0.83 | 4.8 | 2.3 | 0.83 | 4.8 | 2.4 | 0.94 | 0.12 |
| α‐Glucosidase | |||||||||
| Screen | 5256 | 0 | 77 | 3.4 | 0.42 | 24 | 4.9 | 5.2 | 0.071 |
| PD | 12 | 0.14 | 0.89 | 0.52 | 0.14 | 0.89 | 0.52 | 0.24 | 0.069 |
| Non‐PD | 60 | 0.53 | 15 | 2.5 | 0.53 | 15 | 3.3 | 2.9 | 0.37 |
| α‐Galactosidase | |||||||||
| Screen | 5287 | 0 | 212 | 4.8 | 1.1 | 63 | 7.8 | 12 | 0.17 |
| FD | 20 | 0 | 0.82 | 0.19 | 0 | 0.82 | 0.31 | 0.32 | 0.072 |
| Non‐FD | 60 | 1.2 | 11 | 4.4 | 1.2 | 11 | 4.4 | 2.2 | 0.28 |
Note: All enzyme activities were indicated as nmol of 4MU released/hour/mL of blood.
Abbreviations: SD, Standard deviation; SEM, standard error of mean.
Mutations and variants found for GBA, GAA, and GLA genes
| Enzyme activity (nmol 4MU/hr/mL) | cDNA | Protein | Zygosity | Variant | |
|---|---|---|---|---|---|
| Gene: | |||||
| 1 | 0.51 | 1448 T > C | L444P | Hetero | Pathogenic |
| 1483G > C | A456P | Hetero | Benign | ||
| 2 | 0.52 | 476 G > A | R159Q | Homo | Pathogenic |
| 3 | 1.8 | 38A > G | K13R | Hetero | Benign |
| Gene: | |||||
| 1 | 0.00 | 1726G > A | G576S | Hetero | Benign/likely benign |
| 2065G > A | E689K | Hetero | Benign/likely benign | ||
| 596A > G | H199R | Homo | Benign | ||
| 668 G > A | R223H | Homo | Benign | ||
| 2 | 0.00 | 596A > G | H199R | Homo | Benign |
| 668G > A | R223H | Homo | Benign | ||
| 3 | 0.00 | 596A > G | H199R | Hetero | Benign |
| 668 G > A | R223H | Hetero | Benign | ||
| 4 | 0.00 | 596A > G | H199R | Hetero | Benign |
| 668 G > A | R223H | Hetero | Benign | ||
| 5 | 0.00 | 2560C > T | R854 | Hetero | Pathogenic |
| 2446G > A | V816I | Hetero | Benign | ||
| 6 | 0.03 | 2446G > A | V816I | Hetero | Benign |
| 1985del | Hetero | Novel | |||
| 7 | 0.05 | 2560C > T | R854 | Hetero | Pathogenic |
| 596A > G | H199R | Homo | Benign | ||
| 668 G > A | R223H | Homo | Benign | ||
| 8 | 0.05 | 596A > G | H199R | Hetero | Benign |
| 668 G > A | R223H | Hetero | Benign | ||
| 472 A > G | T158A | Hetero | Novel | ||
| 503G > T | R168L | Hetero | Novel | ||
| Gene: | |||||
| 1 | 0.00 | 335 G > A | R112H | Hemi | Pathogenic/likely pathogenic |
| 2 | 0.91 | 427 G > A | A143T | Hemi | Conflicting interpretations of pathogenicity |
| 3 | 0.03 | −10 C > T | 5' UTR | Hemi | |
| 4 | 0.28 | 5049 C > T | 5' UTR | Hetero | |
| 5 | 0.44 | −10 C > T | 5' UTR | Hetero | |
| 6 | 0.47 | −10 C > T | 5' UTR | Hetero | |
Note: All enzyme activities were indicated as nmol of 4MU released/hour/ml of blood.
Premature stop codon.
Mutations found in 5'UTR for GLA gene.