| Literature DB >> 33976850 |
Jiequn Yi1, Jianbai Liu1, Dunsong Li2, Donglei Sun1, Jihu Li1, Yuxing An1, Han Wu1.
Abstract
Trichogramma is a useful species that is widely applied in biocontrol. Temperature profoundly affects the commercial application of T. chilonis. Different developmental transcriptomes of prepupae and pupae of T. chilonis under 10, 25, and 40°C were obtained from our previous study. In this study, transcriptomic analysis was further conducted to gain a clear understanding of the molecular changes in the prepupae of T. chilonis under different thermal conditions. A total of 37,295 unigenes were identified from 3 libraries of prepupae of T. chilonis, 17,293 of which were annotated. Differential expression analysis showed that 408 and 108 differentially expressed genes (DEGs) were identified after heat and cold treatment, respectively. Under heat stress, the pathway of protein processing in endoplasmic reticulum was found to be active. Most of the genes involved in this pathway were annotated as lethal (2) essential for life [l(2)efl] and heat shock protein genes (hsps), which were both highly upregulated. Nevertheless, most of the genes involved in another significantly enriched pathway of starch and sucrose metabolism were downregulated, including 1 alpha-glucosidase gene and 2 beta-glucuronidase genes. Under cold stress, no significantly enriched pathway was found, and the significantly enriched GO terms were related to the interaction with host and immune defenses. Together, these results provide us with a comprehensive view of the molecular mechanisms of T. chilonis in response to temperature stresses and will provide new insight into the mass rearing and utilization of T. chilonis.Entities:
Keywords: Trichogramma chilonis; gene expression; molecular response; thermal stress; transcriptome
Year: 2021 PMID: 33976850 PMCID: PMC8093697 DOI: 10.1002/ece3.7383
Source DB: PubMed Journal: Ecol Evol ISSN: 2045-7758 Impact factor: 2.912
FIGURE 1Morphological characteristics of the adult female (a) and male (b) of Trichogramma chilonis
Annotation of the transcriptome of prepupal Trichogramma chilonis
| Database | Number | Ratio (%) |
|---|---|---|
| COG | 5,692 | 32.92 |
| GO | 8,388 | 48.51 |
| KEGG | 5,181 | 29.96 |
| Swiss‐Prot | 12,862 | 74.38 |
| NR | 17,174 | 99.31 |
| Total | 17,293 | 100.00 |
FIGURE 2Species distribution of annotated unigenes in the transcriptome of prepupal T. chilonis
Summary of DEGs during heat and cold stress
| DEG set | All DEG | Upregulated (all/annotated) | Downregulated (all/annotated) |
|---|---|---|---|
| T2 vs. T3 | 408 | 212/142 | 196/165 |
| T2 vs. T1 | 108 | 33/21 | 75/63 |
The significantly enriched GO terms in T2 versus T3 and T2 versus T1
| Group | GO term | DEGs | Corrected |
|---|---|---|---|
| T2 vs. T1 | Interaction with host | 2 | .00010298 |
| Cell–cell adhesion | 2 | .003674098 | |
| Defense response to fungus | 2 | .00458673 | |
| Defense response to bacterium | 2 | .012137445 | |
| Positive regulation of DNA binding | 1 | .049390635 | |
| Host cell part | 2 | 9.25E−05 | |
| T2 vs. T3 | Response to stress | 10 | 9.58E−10 |
| 5′‐flap endonuclease activity | 2 | .016526323 | |
| Beta‐glucuronidase activity | 2 | 4.91E−02 |
FIGURE 3KEGG enrichment analysis of differentially expressed genes (DEGs) in T2 vs. T3 (a) and T2 vs. T1 (b). T1 is low‐temperature group; T2 is control group; T3 is high‐temperature group
Differentially expressed HSP family genes and l(2)efls under heat and cold stress
| Unigene ID | Annotation | T2 vs. T1 | T2 vs. T3 |
|---|---|---|---|
| CL11101Contig1 | Protein lethal(2) essential for life [ | ↑ | ↑ |
| CL13371Contig1 | PREDICTED: protein lethal(2) essential for life‐like [ | – | ↑ |
| CL5675Contig1 | PREDICTED: protein lethal(2) essential for life‐like [ | – | ↑ |
| CL12768Contig1 | PREDICTED: protein lethal(2) essential for life‐like [ | ↑ | ↑ |
| CL11322Contig1 | PREDICTED: protein lethal(2) essential for life‐like [ | ↑ | ↑ |
| CL2202Contig1 | PREDICTED: protein lethal(2) essential for life‐like [ | – | ↑ |
| CL5154Contig1 | PREDICTED: protein lethal(2) essential for life‐like [ | – | ↑ |
| CL12907Contig1 | PREDICTED: protein lethal(2) essential for life‐like [ | ↑ | ↑ |
| Group1_Unigene_BMK.8427 | heat shock protein 40 [ | – | ↑ |
| CL8830Contig1 | PREDICTED: heat shock protein 83‐like isoform 2 [ | – | ↑ |
| Group1_Unigene_BMK.11524 | PREDICTED: heat shock 70 kDa protein cognate 4‐like [ | – | ↑ |
| CL10548Contig1 | PREDICTED: heat shock protein 70 A1‐like [ | – | ↑ |
“↑” means that the unigene is upregulated; “–” means that the unigene is not differentially expressed.
FIGURE 4Comparison of fold change in gene expression from DEGs and qRT‐PCR results