Literature DB >> 33975908

Reply to Shaw: Challenges for enrichment analysis of AMR gene-bearing plasmids.

You Che1, Yu Yang1, Xiaoqing Xu1, Karel Břinda2,3, Martin F Polz4,5, William P Hanage3, Tong Zhang6.   

Abstract

Year:  2021        PMID： 33975908      PMCID： PMC8166170          DOI： 10.1073/pnas.2104557118

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  6 in total

1.  Large-scale analysis of plasmid relationships through gene-sharing networks.

Authors:  Manu Tamminen; Marko Virta; Renato Fani; Marco Fondi
Journal:  Mol Biol Evol       Date:  2011-11-29       Impact factor: 16.240

2.  Conjugative plasmids interact with insertion sequences to shape the horizontal transfer of antimicrobial resistance genes.

Authors:  You Che; Yu Yang; Xiaoqing Xu; Karel Břinda; Martin F Polz; William P Hanage; Tong Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-09       Impact factor: 11.205

3.  Null models for gene enrichment in plasmids.

Authors:  Liam P Shaw
Journal:  Proc Natl Acad Sci U S A       Date:  2021-05-25       Impact factor: 12.779

4.  Pathways for horizontal gene transfer in bacteria revealed by a global map of their plasmids.

Authors:  Santiago Redondo-Salvo; Raúl Fernández-López; Raúl Ruiz; Luis Vielva; María de Toro; Eduardo P C Rocha; M Pilar Garcillán-Barcia; Fernando de la Cruz
Journal:  Nat Commun       Date:  2020-07-17       Impact factor: 14.919

5.  Persistence and reversal of plasmid-mediated antibiotic resistance.

Authors:  Allison J Lopatkin; Hannah R Meredith; Jaydeep K Srimani; Connor Pfeiffer; Rick Durrett; Lingchong You
Journal:  Nat Commun       Date:  2017-11-22       Impact factor: 14.919

6.  Positive selection and compensatory adaptation interact to stabilize non-transmissible plasmids.

Authors:  A San Millan; R Peña-Miller; M Toll-Riera; Z V Halbert; A R McLean; B S Cooper; R C MacLean
Journal:  Nat Commun       Date:  2014-10-10       Impact factor: 14.919
  6 in total

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