Literature DB >> 33972666

Pests, diseases, and aridity have shaped the genome of Corymbia citriodora.

Adam L Healey1,2, Mervyn Shepherd3, Graham J King3, Jakob B Butler4, Jules S Freeman4,5,6, David J Lee7, Brad M Potts4,5, Orzenil B Silva-Junior8, Abdul Baten3,9, Jerry Jenkins10, Shengqiang Shu11, John T Lovell10, Avinash Sreedasyam10, Jane Grimwood10, Agnelo Furtado12, Dario Grattapaglia8,13, Kerrie W Barry11, Hope Hundley11, Blake A Simmons12,14, Jeremy Schmutz10,11, René E Vaillancourt4,5, Robert J Henry12.   

Abstract

Corymbia citriodora is a member of the predominantly Southern Hemisphere Myrtaceae family, which includes the eucalypts (Eucalyptus, Corymbia and Angophora; ~800 species). Corymbia is grown for timber, pulp and paper, and essential oils in Australia, South Africa, Asia, and Brazil, maintaining a high-growth rate under marginal conditions due to drought, poor-quality soil, and biotic stresses. To dissect the genetic basis of these desirable traits, we sequenced and assembled the 408 Mb genome of Corymbia citriodora, anchored into eleven chromosomes. Comparative analysis with Eucalyptus grandis reveals high synteny, although the two diverged approximately 60 million years ago and have different genome sizes (408 vs 641 Mb), with few large intra-chromosomal rearrangements. C. citriodora shares an ancient whole-genome duplication event with E. grandis but has undergone tandem gene family expansions related to terpene biosynthesis, innate pathogen resistance, and leaf wax formation, enabling their successful adaptation to biotic/abiotic stresses and arid conditions of the Australian continent.

Entities:  

Year:  2021        PMID: 33972666     DOI: 10.1038/s42003-021-02009-0

Source DB:  PubMed          Journal:  Commun Biol        ISSN: 2399-3642


  53 in total

1.  The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).

Authors:  G A Tuskan; S Difazio; S Jansson; J Bohlmann; I Grigoriev; U Hellsten; N Putnam; S Ralph; S Rombauts; A Salamov; J Schein; L Sterck; A Aerts; R R Bhalerao; R P Bhalerao; D Blaudez; W Boerjan; A Brun; A Brunner; V Busov; M Campbell; J Carlson; M Chalot; J Chapman; G-L Chen; D Cooper; P M Coutinho; J Couturier; S Covert; Q Cronk; R Cunningham; J Davis; S Degroeve; A Déjardin; C Depamphilis; J Detter; B Dirks; I Dubchak; S Duplessis; J Ehlting; B Ellis; K Gendler; D Goodstein; M Gribskov; J Grimwood; A Groover; L Gunter; B Hamberger; B Heinze; Y Helariutta; B Henrissat; D Holligan; R Holt; W Huang; N Islam-Faridi; S Jones; M Jones-Rhoades; R Jorgensen; C Joshi; J Kangasjärvi; J Karlsson; C Kelleher; R Kirkpatrick; M Kirst; A Kohler; U Kalluri; F Larimer; J Leebens-Mack; J-C Leplé; P Locascio; Y Lou; S Lucas; F Martin; B Montanini; C Napoli; D R Nelson; C Nelson; K Nieminen; O Nilsson; V Pereda; G Peter; R Philippe; G Pilate; A Poliakov; J Razumovskaya; P Richardson; C Rinaldi; K Ritland; P Rouzé; D Ryaboy; J Schmutz; J Schrader; B Segerman; H Shin; A Siddiqui; F Sterky; A Terry; C-J Tsai; E Uberbacher; P Unneberg; J Vahala; K Wall; S Wessler; G Yang; T Yin; C Douglas; M Marra; G Sandberg; Y Van de Peer; D Rokhsar
Journal:  Science       Date:  2006-09-15       Impact factor: 47.728

Review 2.  The genomic basis of adaptation in plants.

Authors:  Pádraic J Flood; Angela M Hancock
Journal:  Curr Opin Plant Biol       Date:  2017-02-27       Impact factor: 7.834

3.  High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development.

Authors:  Nicolas Daccord; Jean-Marc Celton; Gareth Linsmith; Claude Becker; Nathalie Choisne; Elio Schijlen; Henri van de Geest; Luca Bianco; Diego Micheletti; Riccardo Velasco; Erica Adele Di Pierro; Jérôme Gouzy; D Jasper G Rees; Philippe Guérif; Hélène Muranty; Charles-Eric Durel; François Laurens; Yves Lespinasse; Sylvain Gaillard; Sébastien Aubourg; Hadi Quesneville; Detlef Weigel; Eric van de Weg; Michela Troggio; Etienne Bucher
Journal:  Nat Genet       Date:  2017-06-05       Impact factor: 38.330

4.  Genome sequence and genetic diversity of European ash trees.

Authors:  Elizabeth S A Sollars; Andrea L Harper; Laura J Kelly; Christine M Sambles; Ricardo H Ramirez-Gonzalez; David Swarbreck; Gemy Kaithakottil; Endymion D Cooper; Cristobal Uauy; Lenka Havlickova; Gemma Worswick; David J Studholme; Jasmin Zohren; Deborah L Salmon; Bernardo J Clavijo; Yi Li; Zhesi He; Alison Fellgett; Lea Vig McKinney; Lene Rostgaard Nielsen; Gerry C Douglas; Erik Dahl Kjær; J Allan Downie; David Boshier; Steve Lee; Jo Clark; Murray Grant; Ian Bancroft; Mario Caccamo; Richard J A Buggs
Journal:  Nature       Date:  2016-12-26       Impact factor: 49.962

5.  The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution.

Authors:  Ignazio Verde; Albert G Abbott; Simone Scalabrin; Sook Jung; Shengqiang Shu; Fabio Marroni; Tatyana Zhebentyayeva; Maria Teresa Dettori; Jane Grimwood; Federica Cattonaro; Andrea Zuccolo; Laura Rossini; Jerry Jenkins; Elisa Vendramin; Lee A Meisel; Veronique Decroocq; Bryon Sosinski; Simon Prochnik; Therese Mitros; Alberto Policriti; Guido Cipriani; Luca Dondini; Stephen Ficklin; David M Goodstein; Pengfei Xuan; Cristian Del Fabbro; Valeria Aramini; Dario Copetti; Susana Gonzalez; David S Horner; Rachele Falchi; Susan Lucas; Erica Mica; Jonathan Maldonado; Barbara Lazzari; Douglas Bielenberg; Raul Pirona; Mara Miculan; Abdelali Barakat; Raffaele Testolin; Alessandra Stella; Stefano Tartarini; Pietro Tonutti; Pere Arús; Ariel Orellana; Christina Wells; Dorrie Main; Giannina Vizzotto; Herman Silva; Francesco Salamini; Jeremy Schmutz; Michele Morgante; Daniel S Rokhsar
Journal:  Nat Genet       Date:  2013-03-24       Impact factor: 38.330

6.  Darwinian evolution in the light of genomics.

Authors:  Eugene V Koonin
Journal:  Nucleic Acids Res       Date:  2009-02-12       Impact factor: 16.971

7.  The genome of Eucalyptus grandis.

Authors:  Alexander A Myburg; Dario Grattapaglia; Gerald A Tuskan; Uffe Hellsten; Richard D Hayes; Jane Grimwood; Jerry Jenkins; Erika Lindquist; Hope Tice; Diane Bauer; David M Goodstein; Inna Dubchak; Alexandre Poliakov; Eshchar Mizrachi; Anand R K Kullan; Steven G Hussey; Desre Pinard; Karen van der Merwe; Pooja Singh; Ida van Jaarsveld; Orzenil B Silva-Junior; Roberto C Togawa; Marilia R Pappas; Danielle A Faria; Carolina P Sansaloni; Cesar D Petroli; Xiaohan Yang; Priya Ranjan; Timothy J Tschaplinski; Chu-Yu Ye; Ting Li; Lieven Sterck; Kevin Vanneste; Florent Murat; Marçal Soler; Hélène San Clemente; Naijib Saidi; Hua Cassan-Wang; Christophe Dunand; Charles A Hefer; Erich Bornberg-Bauer; Anna R Kersting; Kelly Vining; Vindhya Amarasinghe; Martin Ranik; Sushma Naithani; Justin Elser; Alexander E Boyd; Aaron Liston; Joseph W Spatafora; Palitha Dharmwardhana; Rajani Raja; Christopher Sullivan; Elisson Romanel; Marcio Alves-Ferreira; Carsten Külheim; William Foley; Victor Carocha; Jorge Paiva; David Kudrna; Sergio H Brommonschenkel; Giancarlo Pasquali; Margaret Byrne; Philippe Rigault; Josquin Tibbits; Antanas Spokevicius; Rebecca C Jones; Dorothy A Steane; René E Vaillancourt; Brad M Potts; Fourie Joubert; Kerrie Barry; Georgios J Pappas; Steven H Strauss; Pankaj Jaiswal; Jacqueline Grima-Pettenati; Jérôme Salse; Yves Van de Peer; Daniel S Rokhsar; Jeremy Schmutz
Journal:  Nature       Date:  2014-06-11       Impact factor: 49.962

8.  The genome of the pear (Pyrus bretschneideri Rehd.).

Authors:  Jun Wu; Zhiwen Wang; Zebin Shi; Shu Zhang; Ray Ming; Shilin Zhu; M Awais Khan; Shutian Tao; Schuyler S Korban; Hao Wang; Nancy J Chen; Takeshi Nishio; Xun Xu; Lin Cong; Kaijie Qi; Xiaosan Huang; Yingtao Wang; Xiang Zhao; Juyou Wu; Cao Deng; Caiyun Gou; Weili Zhou; Hao Yin; Gaihua Qin; Yuhui Sha; Ye Tao; Hui Chen; Yanan Yang; Yue Song; Dongliang Zhan; Juan Wang; Leiting Li; Meisong Dai; Chao Gu; Yuezhi Wang; Daihu Shi; Xiaowei Wang; Huping Zhang; Liang Zeng; Danman Zheng; Chunlei Wang; Maoshan Chen; Guangbiao Wang; Lin Xie; Valpuri Sovero; Shoufeng Sha; Wenjiang Huang; Shujun Zhang; Mingyue Zhang; Jiangmei Sun; Linlin Xu; Yuan Li; Xing Liu; Qingsong Li; Jiahui Shen; Junyi Wang; Robert E Paull; Jeffrey L Bennetzen; Jun Wang; Shaoling Zhang
Journal:  Genome Res       Date:  2012-11-13       Impact factor: 9.043

9.  Oak genome reveals facets of long lifespan.

Authors:  Christophe Plomion; Jean-Marc Aury; Joëlle Amselem; Thibault Leroy; Florent Murat; Sébastien Duplessis; Sébastien Faye; Nicolas Francillonne; Karine Labadie; Grégoire Le Provost; Isabelle Lesur; Jérôme Bartholomé; Patricia Faivre-Rampant; Annegret Kohler; Jean-Charles Leplé; Nathalie Chantret; Jun Chen; Anne Diévart; Tina Alaeitabar; Valérie Barbe; Caroline Belser; Hélène Bergès; Catherine Bodénès; Marie-Béatrice Bogeat-Triboulot; Marie-Lara Bouffaud; Benjamin Brachi; Emilie Chancerel; David Cohen; Arnaud Couloux; Corinne Da Silva; Carole Dossat; François Ehrenmann; Christine Gaspin; Jacqueline Grima-Pettenati; Erwan Guichoux; Arnaud Hecker; Sylvie Herrmann; Philippe Hugueney; Irène Hummel; Christophe Klopp; Céline Lalanne; Martin Lascoux; Eric Lasserre; Arnaud Lemainque; Marie-Laure Desprez-Loustau; Isabelle Luyten; Mohammed-Amin Madoui; Sophie Mangenot; Clémence Marchal; Florian Maumus; Jonathan Mercier; Célia Michotey; Olivier Panaud; Nathalie Picault; Nicolas Rouhier; Olivier Rué; Camille Rustenholz; Franck Salin; Marçal Soler; Mika Tarkka; Amandine Velt; Amy E Zanne; Francis Martin; Patrick Wincker; Hadi Quesneville; Antoine Kremer; Jérôme Salse
Journal:  Nat Plants       Date:  2018-06-18       Impact factor: 15.793

10.  Forest genomics: Advancing climate adaptation, forest health, productivity, and conservation.

Authors:  Nathalie Isabel; Jason A Holliday; Sally N Aitken
Journal:  Evol Appl       Date:  2019-12-23       Impact factor: 5.183

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