Literature DB >> 33951038

Global patterns of aegyptism without arbovirus.

Mark F Olson1, Jose G Juarez1, Moritz U G Kraemer2, Jane P Messina3, Gabriel L Hamer1.   

Abstract

The world's most important mosquito vector of viruses, Aedes aegypti, is found around the world in tropical, subtropical and even some temperate locations. While climate change may limit populations of Ae. aegypti in some regions, increasing temperatures will likely expand its territory thus increasing risk of human exposure to arboviruses in places like Europe, Northern Australia and North America, among many others. Most studies of Ae. aegypti biology and virus transmission focus on locations with high endemicity or severe outbreaks of human amplified urban arboviruses, such as dengue, Zika, and chikungunya viruses, but rarely on areas at the margins of endemicity. The objective in this study is to explore previously published global patterns in the environmental suitability for Ae. aegypti and dengue virus to reveal deviations in the probability of the vector and human disease occurring. We developed a map showing one end of the gradient being higher suitability of Ae. aegypti with low suitability of dengue and the other end of the spectrum being equal and higher environmental suitability for both Ae. aegypti and dengue. The regions of the world with Ae. aegypti environmental suitability and no endemic dengue transmission exhibits a phenomenon we term 'aegyptism without arbovirus'. We then tested what environmental and socioeconomic variables influence this deviation map revealing a significant association with human population density, suggesting that locations with lower human population density were more likely to have a higher probability of aegyptism without arbovirus. Characterizing regions of the world with established populations of Ae. aegypti but little to no autochthonous transmission of human-amplified arboviruses is an important step in understanding and achieving aegyptism without arbovirus.

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Year:  2021        PMID: 33951038      PMCID: PMC8128236          DOI: 10.1371/journal.pntd.0009397

Source DB:  PubMed          Journal:  PLoS Negl Trop Dis        ISSN: 1935-2727


Introduction

Over half the world’s population lives in areas at risk of human-amplified urban arboviruses transmitted by Aedes aegytpi mosquitoes [1]. In addition to chikungunya, yellow fever, and Zika viruses, Ae. aegypti is the primary vector for dengue virus which infects an estimated 390 million individuals each year [2], with 100 million of those being symptomatic [3]. While great strides have been made in vector surveillance and control through conventional, biological, and genetic approaches, and vaccine development is ongoing [see 4], dengue transmission is expected to persist and in some regions expand while other regions contract [1]. Many studies have identified environmental, meteorological, and demographic factors related to vector populations and arboviral transmission such as human population density, climate, normalized difference vegetation index (NDVI), and gross domestic product (GDP) [5,6]. More recent research has considered the impact of socio-economic status [7] and urbanization including urban heat islands [8] on risk of increased dengue transmission [9,10]. Understandably, studies tend to be conducted in locations of high endemicity for arboviral disease transmission or where recent outbreaks have occurred. Rarely have studies evaluated landscape influences of Ae. aegypti populations or arbovirus transmission in locations representing the margins of endemicity. We recently conducted a study in South Texas where large populations of Ae. aegypti occur yet local transmission of human-amplified urban arboviruses is rare, and we discovered high rates of non-human feeding by Ae. aegypti [11]. These wasted bites on non-amplification hosts likely reduced R for ZIKV limiting local transmission to 10 human cases between 2016–2017. In contrast, Tamaulipas, the Mexican state across the border, reported 16,835 cases in the same period. The lower availability of humans to Ae. aegypti and associated utilization of non-human hosts is one of several mechanisms for a phenomenon we term ‘aegyptism without arbovirus’; defined as the occurrence of established Ae. aegypti populations without endemic human-amplified urban arboviruses. This context is similar to the long-held observation of ‘anophelism without malaria’ [12,13], where researchers in the 1920s started to notice and understand the mechanisms of some regions having Plasmodium-competent Anopheles spp. mosquitoes but not the associated human malaria. The objective of this study is to explore the global patterns of environmental suitability for Ae. aegypti and dengue to characterize the deviations in these predictions. We addressed this objective by developing a map predicting a gradient ranging from higher environmental suitability for Ae. aegypti but low suitability for dengue to the other end of the spectrum where areas have similar and higher suitability for both Ae. aegypti and dengue. Our analysis is based upon previously published data estimating global environmental suitability for Ae. aegypti [14] and dengue [1]. We used these suitability maps projected to 5 km2 grids to then further calculate deviations in Aedes aegypti and dengue suitability. We then identify environmental, meteorological, and demographic factors associated with this gradient in the deviation between Ae. aegypti and dengue suitability to explore the social-ecological factors driving aegyptism without arbovirus.

Materials and methods

Deviation between the probability of occurrence of Aedes aegypti and dengue

This study utilized the 2015 global probability of occurrence for Ae. aegypti based on a mosquito database and environmental variables predicting their global distribution [14]. We also used the 2015 global probability of dengue occurrence which was based on an ecological niche model of human cases to predict environmental suitability [1]. It is important to note that these maps are predictions of environmental suitability, not occurrence of Aedes aegypti or dengue. To compare the global pattern of Ae. aegypti and dengue suitability we performed raster calculations in QGIS (version 3.10.1-A Coruña). Both the Ae. aegypti environmental suitability map and the global probability of dengue suitability are at 5 km2 resolution. We removed all cells where either Ae. aegypti or dengue suitability were < 0.1 to filter out locations where environmental suitability for Ae. aegypti or dengue virus is extremely low (e.g. Greenland and Arctic locations). To create a map that illustrates where Ae. aegypti and dengue deviate spatially, we generated an initial raster that calculated “Ae. aegypti” minus “dengue”. This procedure removed all pixels where an interaction between Ae. aegypti and dengue did not occur. This resulting Ae. aegypti minus dengue raster (‘Uncorrected deviation layer’) produced one end of the spectrum with a suitable environment for Ae. aegypti but low suitability for dengue and the other end of the spectrum included an equal suitability for both Ae. aegypti and dengue. The problem with this later end was that areas of the world with near zero suitability for both Ae. aegypti and dengue were indifferent from areas with high suitability for Ae. aegypti and dengue. To account for this, we created seven unique raster’s that would incrementally remove areas with lower dengue environmental suitability according to the gradient levels in Table 1. These rasters were merged to develop an image that encompasses the deviation between Ae. aegypti probability of occurrence and dengue environmental suitability. Briefly, to create Level 1, we performed the raster calculation: (“Uncorrected deviation layer” ≥ -0.5) AND (“Dengue 2015 filtered” ≥ 0.5). This level represents areas with similar and high environmental suitability of both Ae. aegypti and dengue. This same procedure was used to create the remaining levels in Table 1. Because our focus is on aegyptism without arbovirus, we filtered the deviation raster to only include values ≥ 0 (to exclude areas where dengue environmental suitability was greater than Ae. aegypti) (Fig 1).
Table 1

Correction to the deviation between Ae. aegypti and dengue map by clipping out respective areas with a lower probability of dengue environmental suitability.

LevelUncorrected deviation in Ae. aegypti and dengueClip areas ≤ these values for the probability of dengue suitabilityCorrected deviation in Ae. aegypti and dengue (range)Description
1-0.50.8- 0.5–0.19Remaining cells only have higher dengue suitability
2-0.350.75-0.35–0.24
3-0.20.7-0.20–0.27
4-0.050.65-0.05–0.32Remaining cells have medium-higher dengue suitability
50.10.60–0.36
60.250.550–0.41
70.40.50–0.48Remaining cells have lower-higher dengue suitability
Fig 1

Deviation between Ae. aegypti and dengue environmental suitability.

Green indicates areas where Ae. aegypti is likely to be found, but the environment is not considered suitable for dengue transmission (e.g. Southern United States, Northern Argentina, Northern Australia). White indicates areas where the environmental suitability of Ae. aegypti and dengue is similar and higher. Inset histogram provides distribution of the corrected deviation values. The map was created by the author using QGIS 3.10 (https://qgis.org/en/site/) with public domain map data from Natural Earth (https://www.naturalearthdata.com/downloads/50m-physical-vectors/) and U.S. Geological Survey (https://woodshole.er.usgs.gov/pubs/of2005-1071/data/background/us_bnds/state_boundsmeta.htm).

Deviation between Ae. aegypti and dengue environmental suitability.

Green indicates areas where Ae. aegypti is likely to be found, but the environment is not considered suitable for dengue transmission (e.g. Southern United States, Northern Argentina, Northern Australia). White indicates areas where the environmental suitability of Ae. aegypti and dengue is similar and higher. Inset histogram provides distribution of the corrected deviation values. The map was created by the author using QGIS 3.10 (https://qgis.org/en/site/) with public domain map data from Natural Earth (https://www.naturalearthdata.com/downloads/50m-physical-vectors/) and U.S. Geological Survey (https://woodshole.er.usgs.gov/pubs/of2005-1071/data/background/us_bnds/state_boundsmeta.htm).

Socio-ecological patterns in the deviation between Ae. aegypti and arbovirus

To identify environmental, meteorological, and demographic factors relating to the deviations between Ae. aegypti probability of occurrence and dengue environmental suitability we gathered several global datasets. Human population density maps and subnational infant mortality rates, both of 2015, were obtained through NASA’s SEDAC website [15]. Infant mortality rate is defined as the number of children who die before their first birthday per 1000 live births. Infant mortality rate (IMR) is often used as an indicator for poverty [16] and dengue infection during pregnancy has been linked to increased risk of infant mortality, among other adverse health outcomes [17]. IMR data was available from 234 countries, with 143 of those countries reporting subnational units at the 30 arc-second (approximately 1 km2) resolution [18]. A global map of total gross domestic product (GDP) per capita data at 30 arc-sec resolution for 2015 was obtained from Kummu et al. [19]. Total GDP per 5 x 5 km2 cell was estimated by multiplying per capita GDP by gridded human population data [19]. Global precipitation and temperature rasters at 30 arc-sec spatial resolution were obtained from worldclim.org [20]. These rasters represent average monthly data from 1970 to 2000 and are separated by month. We combined the 12 monthly rasters to create one annual mean temperature raster, and a cumulative annual precipitation raster. While combining the seasonal data into an annual metric loses the opportunity to investigate temporal heterogeneity, we did this to facilitate this exploratory analysis on a global scale. We hypothesize that temperature and precipitation will have an inverse relationship, where higher annual average temperatures and higher cumulative rainfall will be correlated with a lower deviation value on the scale of equal and greater probability of Ae. aegypti occurrence without dengue environmental suitability. We also hypothesize that elevation will be positively correlated with aegyptism without arbovirus. Cells with missing values were removed across all layers before performing the analysis. We used a gradient boosting machine (GBM) approach with a Gaussian distribution to evaluate how the corrected deviation probability of Ae. aegypti and dengue is influenced by human population density, temperature, precipitation, IMR, GDP and elevation. Regression trees were fitted using a learning rate of 0.001, 5-fold cross validation and 10,000 trees to minimize the mean squared error (MSE) loss function [21]. Each tree was iteratively improved using a stepwise manner reducing the variation in the response variable. Models were generated using the “gbm” package in R [22]. Subsequently, we used generalized additive models (GAM) for count data (Poisson) to determine which effect variables (human population density, temperature, precipitation, IMR, GDP and elevation) best explain the variation of the corrected deviation probability. Smoothing terms were evaluated based on their estimated degrees of freedom (edf). We used the adjusted R2 value to determine the best fit model structure. All statistical analyses were conducted in R version 3.5.1 [23] using RStudio version 1.1.456 [24]. To import and analyze rasters in R, we utilized the packages of ‘raster’, ‘dplyr’, ‘mgcv’, and ‘ggplot2’ [25].

Results

Deviation between the probability of occurrence of Aedes aegypti and dengue environmental suitability

A map was generated showing global deviations between the probability of Ae. aegypti and dengue habitat suitability (Fig 1). Values range from 0 (equal and higher environmental suitability for both Ae. aegypti and dengue) to 0.48 (higher suitability of Ae. aegypti with low suitability of dengue) with a mean of 0.07 (residual standard error: 0.09). For example, a 5 x 5 km2 area that has a 0.78 probability of occurrence for Ae. aegypti but only a 0.3 environmental suitability for dengue would have a deviation value of 0.48. The mean deviation value for South Africa, United States, and Australia is 0.18, 0.16, and 0.13, respectively. Locations with a lower probability of aegyptism without arbovirus include Mexico, Thailand and Guatemala which have a mean deviation value of 0.04, 0.02 and 0.01, respectively. We report the mean deviation values for each country in S2 Table which range from 0 to 0.27.

Socio-ecological patterns in the deviation between Ae. aegypti and dengue

The gradient boosting machine (GBM) full model resulted in an MSE of 0.084. The independent variable contributing the most to explaining the variation in the dependent variable was human population density (38.475) and the variable with least relative influence was elevation (0.067). After removing the elevation data, GBM was conducted again on the remaining variables in a stepwise fashion (Table 2). A generalized additive model revealed model 3 to have the best-fit with an R2 value of 0.152 (Table 3). Statistically significant effects were found between the corrected deviance raster and human population density, IMR, temperature, and precipitation as the smooth terms. The human population density layer had a range of 0 to 119,921 persons per km2 and a mean of 135.93 (residual standard error: 0.09) persons per km2. (Table 4).
Table 2

Gradient Boosting Machine (GBM) to determine best-fit model.

Abbreviated variable names include human population density (pop), gross domestic product (gdp), infant mortality rate (imr), annual mean temperature (temp), annual cumulative precipitation (prec), elevation (elev).

Dependent variableIndependent variablesGreatest relative influence (value)Least relative influence (value)
amdpop, gdp, imr, temp, prec, elevpop (38.475)elev (0.067)
amdpop, gdp, imr, temp, precpop (38.460)gdp (2.276)
amdpop, imr, temp, prectemp (44.382)imr (10.905)
amdpop, temp, prectemp (48.580)prec (22.376)
amdpop, temptemp (68.744)pop (31.256)
Table 3

Results of Generalized Additive Model (GAM).

Family: gaussian; link function: identity.

ModelFormulaAdjusted R2Deviance explained
1amd ~ s(pop) + s(gdp) + s(imr) + s(temp) + s(prec) + s(elev)0.11511.5%
2amd ~ s(pop) + s(gdp) + s(imr) + s(temp) + s(prec)0.10710.7%
3amd ~ s(pop) + s(imr) + s(temp) + s(prec)0.15215.2%
4amd ~ s(pop) + s(temp) + s(prec)0.13813.8%
5amd ~ s(pop) + s(temp)0.11311.3%
Table 4

Results of Generalized Additive Model (GAM) for Model 3.

Family: gaussian; link function: identity. (Formula: amd_r ~ s(pop_r) + s(imr_r) + s(temp_r) + s(prec_r); n = 1,190,702).

Parametric coefficients:
EstimateStandard Errort-valuepr (>|t|)
(intercept)7.223e-028.197e-05881.15<2e-16***
Approximate significance of smooth terms:
edfFp-value
s(pop)9.0005888<2e-16***
s(imr)8.9981981<2e-16***
s(temp)8.98810640<2e-16***
s(prec)8.9972597<2e-16***

*** < 0.001

Gradient Boosting Machine (GBM) to determine best-fit model.

Abbreviated variable names include human population density (pop), gross domestic product (gdp), infant mortality rate (imr), annual mean temperature (temp), annual cumulative precipitation (prec), elevation (elev).

Results of Generalized Additive Model (GAM).

Family: gaussian; link function: identity.

Results of Generalized Additive Model (GAM) for Model 3.

Family: gaussian; link function: identity. (Formula: amd_r ~ s(pop_r) + s(imr_r) + s(temp_r) + s(prec_r); n = 1,190,702). *** < 0.001 The subnational IMR ranged from a low of 0.24 to a high of 142.93 and a mean of 35.63 (infant deaths per 1,000 live births) (residual standard error: 0.09). Using human population density, temperature and precipitation as smoothing terms, the parametric coefficient for IMR was 3.002e-04 (± 3.067e-06 SE; p < 0.001). Mean annual temperatures ranged from 6.98°C to 31.21°C throughout the range covered by the deviation raster, with a mean of 25.31°C (residual standard error: 0.09 on 1,207,056 degrees of freedom). The parametric coefficient for temperature was 1.347e-03 (± 4.233e-05 SE; pr (>|t|) = <2e-16). Precipitation had a range of 4 to 9,083 mm rainfall and a global mean of 1,550.18 mm (residual standard error: 0.09 on 1,207,195 degrees of freedom). The parametric coefficient for precipitation, using human population density, temperature and IMR as smoothing terms, was -1.530e-05 (± 1.127e-07 SE; pr (>|t|) = <2e-16).

Discussion

Aedes aegypti has proliferated in urban areas around the globe in the last century. While ubiquitous in many tropical and subtropical urban areas, some locations infested with Ae. aegypti do not exhibit high levels of human-amplified urban arboviral transmission as in other areas. This study built on previous studies mapping the global suitability of Ae. aegytpi and dengue to generate a map of deviation values including the observation of aegyptism without arbovirus. We produced a global map showing this gradient from high suitability for Ae. aegypti but low suitability for dengue to the other end of the spectrum where areas have similar and higher suitability for both Ae. aegypti and dengue. We show that some countries on the margins of endemicity of human-amplified arboviruses have a higher deviation value compared to highly endemic countries. For example, the U.S. and Argentina, both countries with occasional autochthonous transmission of dengue virus [26-28] have mean deviation values of 0.16 and 0.18, respectively (S2 and S3 Figs). These higher values along this spectrum are more representative of aegyptism without arbovirus. This is also corroborated by empirical data showing that even in areas with high abundances of Ae. aegypti, low human feeding diminishes the risk of Zika virus transmission [11,29]. Likewise, two major urban centers of Kenya exhibit higher values of aegyptism without arbovirus while Mombasa, a coastal city in the same country has frequent dengue epidemics (S4 Fig) [29]. Countries highly endemic for dengue, such as Honduras and Thailand, have mean deviation values of 0.038 and 0.023, respectively, which are values representing the regions with higher suitability for both Ae. aegypti and dengue. We identified a significant association between human population density and the deviation in environmental suitability of Ae. aegypti and dengue. Locations with higher deviation values had lower human population densities. This means that regions of the world with aegyptism without arbovirus are more likely to be lower human population densities compared to regions with more equal and higher probabilities of Ae. aegypti and dengue. It was surprising to see that GDP did not have a significant effect on the deviation values. Åström et al. modeled various scenarios of dengue distribution according to climate and socioeconomic change, finding a beneficial, protective effect from increasing GDP [30]. Locations with higher GDP would presumably have better access to piped water, screened windows and possibly air conditioning, factors which could reduce arboviral transmission [31]. In addition to GDP, Kummu et al. also mapped a human development index (HDI) which is composed of the achievement of several key development indicators, and this may be a better predictor of deviation. Interestingly, the deviation values for aegyptism without arbovirus were positively correlated to infant mortality rates. We expected to see higher deviation values representing aegyptism without arbovirus in places with lower IMR, but this wasn’t the case. One potential explanation is reporting bias with some low-income areas having higher dengue burdens than what are reported. For example, Africa has a wide variety of common febrile illnesses with varying etiology, thus a case of dengue fever could be inadvertently misdiagnosed as malaria, especially in places where testing is less than rigorous or non-existent [32]. Regions with notoriously high IMR, but where dengue is underreported could therefore appear to have higher presence of aegypti without arbovirus. Recent studies suggest that climate change, while limiting expansion of Ae. aegypti in some locations, will likely increase the risk of human exposure in other areas like North America, Australia and Europe [33,34]. Certainly, temperature plays an important role in its propagation [35]. Interestingly, our study found a significant relationship between temperature and aegyptism without arbovirus, where higher average annual temperatures were associated with higher suitability for Ae. aegypti and lower suitability of dengue. This pattern is based on average yearly temperatures and seasonality and diurnal temperature fluctuations were not considered. Carrington et al. found greater potential for dengue virus transmission in Ae. aegypti exposed to large diurnal fluctuations at lower mean temperatures [36]. Further study on the effects of temperature on aegyptism without arbovirus is needed. Precipitation is also a main driver of Ae. aegypti populations as a water source is necessary for oviposition. We observed a significant effect on deviation where lower average precipitation was associated with higher probability of Ae. aegypti without arbovirus disease. It is interesting to note, however, that many locations with less than 100 mm per year in rainfall were still considered highly suitable for Ae. aegypti. Perhaps places with little to no rainfall such as Phoenix, Arizona, are still capable of maintaining high populations of Ae. aegypti due to prolific use of water in the urban landscape and abundant container habitat [37]. The complex nature of dengue transmission requires competent mosquito vectors and viremic and susceptible humans to initiate and sustain transmission. This current study does not explore additional factors that could influence the abundance of Ae. aegypti and the probability of local transmission of dengue virus. For example, the endophilic behavior and propensity to feed on humans of Ae. aegypti is known to vary [38,39]. Some dengue endemic settings have high abundance of indoor populations [40] but in other less endemic areas, outdoor Ae. aegypti populations are larger than indoor populations [41]. Also, this study does not consider heterogeneity in virus importation by humans or human herd immunity. Some regions with abundant Ae. aegypti have frequent importation of viremic humans helping to initiate local transmission [42]. Heterogeneity in human herd immunity to dengue serotypes is also a factor informing probability of dengue transmission [43], a factor that we have not considered. While we are pointing out regions of the world with higher suitability of Ae. aegypti and lower suitability of dengue virus we also acknowledge Ae. aegypti is not the only vector for dengue virus. Multiple studies have documented dengue virus transmission in the absence of Ae. aegypti and instead incriminate the Asian tiger mosquito, Ae. albopictus as a secondary vector [44-47]. A future study could take a similar approach to identifying global patterns of dengue disease in the absence of Ae. aegypti to help provide more evidence of transmission by other vector species. Our analysis is built upon predictions of environmental suitability of Ae. aegypti [14] and dengue [1], which introduces sources of error and uncertainty. For example, Messina et al. [1] global predictions of dengue includes high risk in regions such as Arkansas, USA, with values around 0.87 (range of 0–1). There is no documented autochthonous transmission of any human-amplified arbovirus in Arkansas in the last two centuries [48,49]. As a result of this model’s prediction, our deviation map includes values in Arkansas from 0–0.15, that would falsely indicate that this region has both similar and high levels of Ae. aegypti and dengue. These anomalies likely occur elsewhere in the world with these deviation value predictions, especially in developing countries where differential diagnosis of febrile illness in humans is less common. At the global scale, our deviation map identifies regions around the world on the margins of arboviral endemicity but where the environment is suitable for Ae. aegypti. However, at a finer resolution (e.g. at the county or city level), one can find deviation values that don’t reflect updated data documenting Ae. aegypti and human dengue cases. In the future, this same analysis could be done with improved Ae. aegypti and human case data for dengue or other arboviral diseases at a finer spatial scale. In conclusion, our study identified several focal points around the globe which appear to exhibit this phenomenon of aegyptism without arbovirus. Parts of South America, Africa, South Europe, and North Australia appear to exhibit this same phenomenon that we find in the United States. While Ae. aegypti is found in all of these locations and even expanding in many areas, vector presence does not unequivocally translate to the transmission of human-amplified urban arboviruses such as dengue. A suite of factors such as Ae. aegypti vector competence, utilization of humans as hosts, and human social practices reducing contact with mosquitoes are likely to influence the risk of arbovirus transmission. Further research to elucidate the underlying mechanisms which facilitate aegyptism without arbovirus is warranted. The knowledge gained from this research will help guide scientists, public health officials and policy makers in our ongoing battle against mosquito-borne viruses.

Deviation between Ae. aegypti probability of occurrence and dengue environmental suitability, zoomed in on North America, South America, South Europe and North Africa, Africa, and Australia.

The map was created by the author using QGIS 3.10 (https://qgis.org/en/site/) with public domain map data from Natural Earth (https://www.naturalearthdata.com/downloads/50m-physical-vectors/) and U.S. Geological Survey (https://woodshole.er.usgs.gov/pubs/of2005-1071/data/background/us_bnds/state_boundsmeta.htm). (TIF) Click here for additional data file.

Deviation between Ae. aegypti probability of occurrence and dengue environmental suitability for the Southern United States.

The map was created by the author using QGIS 3.10 (https://qgis.org/en/site/) with public domain map data from Natural Earth (https://www.naturalearthdata.com/downloads/50m-physical-vectors/) and U.S. Geological Survey (https://woodshole.er.usgs.gov/pubs/of2005-1071/data/background/us_bnds/state_boundsmeta.htm). (TIF) Click here for additional data file.

Deviation between Ae. aegypti probability of occurrence and dengue environmental suitability for Northern Argentina, Paraguay, and Southern Brazil.

The map was created by the author using QGIS 3.10 (https://qgis.org/en/site/) with public domain map data from Natural Earth (https://www.naturalearthdata.com/downloads/50m-physical-vectors/) and U.S. Geological Survey (https://woodshole.er.usgs.gov/pubs/of2005-1071/data/background/us_bnds/state_boundsmeta.htm). (TIF) Click here for additional data file.

Deviation between Ae. aegypti probability of occurrence and dengue environmental suitability for Kisumu, Nairobi and Mombasa, Kenya.

The map was created by the author using QGIS 3.10 (https://qgis.org/en/site/) with public domain map data from Natural Earth (https://www.naturalearthdata.com/downloads/50m-physical-vectors/) and U.S. Geological Survey (https://woodshole.er.usgs.gov/pubs/of2005-1071/data/background/us_bnds/state_boundsmeta.htm). (TIF) Click here for additional data file.

Data sources for the global rasters used in this paper.

(DOCX) Click here for additional data file.

Statistical summary of Ae. aegypti minus dengue deviation, by country.

White indicates the lower end of the spectrum, where Ae. aegypti occurrence and risk of dengue is nearly equal and high, and green represents the other end of the spectrum where Ae. aegypti can be found without dengue. Countries with 5 or fewer cells (5 km2) were removed from the table for brevity. (DOCX) Click here for additional data file. 16 Feb 2021 Dear Dr. Hamer, Thank you very much for submitting your manuscript "Global patterns of aegyptism without arbovirus" for consideration at PLOS Neglected Tropical Diseases. As with all papers reviewed by the journal, your manuscript was reviewed by members of the editorial board and by several independent reviewers. In light of the reviews (below this email), we would like to invite the resubmission of a significantly-revised version that takes into account the reviewers' comments. We cannot make any decision about publication until we have seen the revised manuscript and your response to the reviewers' comments. 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As you describe the new analyses required for acceptance, please consider the following: Methods -Are the objectives of the study clearly articulated with a clear testable hypothesis stated? -Is the study design appropriate to address the stated objectives? -Is the population clearly described and appropriate for the hypothesis being tested? -Is the sample size sufficient to ensure adequate power to address the hypothesis being tested? -Were correct statistical analysis used to support conclusions? -Are there concerns about ethical or regulatory requirements being met? Reviewer #1: See my overall review in the general comments Reviewer #2: Methods are appropriate. -------------------- Results -Does the analysis presented match the analysis plan? -Are the results clearly and completely presented? -Are the figures (Tables, Images) of sufficient quality for clarity? Reviewer #1: See my overall review in the general comments Reviewer #2: Results are clear. -------------------- Conclusions -Are the conclusions supported by the data presented? -Are the limitations of analysis clearly described? -Do the authors discuss how these data can be helpful to advance our understanding of the topic under study? -Is public health relevance addressed? Reviewer #1: See my overall review in the general comments Reviewer #2: Yes. -------------------- Editorial and Data Presentation Modifications? Use this section for editorial suggestions as well as relatively minor modifications of existing data that would enhance clarity. If the only modifications needed are minor and/or editorial, you may wish to recommend “Minor Revision” or “Accept”. Reviewer #1: See my overall review in the general comments Reviewer #2: Minor Revision. -------------------- Summary and General Comments Use this section to provide overall comments, discuss strengths/weaknesses of the study, novelty, significance, general execution and scholarship. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. If requesting major revision, please articulate the new experiments that are needed. Reviewer #1: This paper describes a modeling analysis of the differential between projected Ae aegypti populations and a model of the likelihood of dengue transmission in an attempt to investgate why some areas with the vector lack dengue. This is an important topic as the primary vector of dengue, Ae aegypti, is spreading to new areas. In particular, parts of the southwestern United States including urban areas in California and Arizona, have recently been infested with this mosquito. And it appears as though the populations are well established in those areas. In addition, dengue is noticeable by its absence in these areas. The issue I have with this work is that it really is based on modeling projections that were conducted five to six years ago. Indeed the models were based on input up to 2015, and so are somewhat dated. I was hoping that the paper would include a benchtop exercise / literature review of the known and current areas with both vector and dengue transmission. The Aedes model makes some embarrassing whiffs, showing Ae. aegypti widespread across northern Australia (it is limited to coastal northern Queensland), and missing the populations in the southwestern United States. The dengue model is likewise based on projections, with dengue probable in much of the SE USA despite a paucity of transmission there. What are we to make of a study that is the product of 2 less than perfect models? Is it error squared? It certainly does not reflect the title of “Global patterns…” that indicate real distributional data. So I think that you need to describe this work as a modeling exercise, an explorative dive into potential links between vector, virus and the environment. I also feel that the paper needs more thorough discussion of reasons why dengue may not occur in areas where Ae. aegypti does. This would be a function of, as you did point out, the development and wealth of the population such that they have access to piped water, window screening and air conditioning. This of course is brought out in the Reiter 2003 publication that you did cite but perhaps a brief discussion of the role that Ae. aegypti as an indoor mosquito has in urban dengue transmission. Other aspects include herd immunity, access to endemic cases, insecticide resistance. Other aspects that you should discuss is that dengue occurs in areas where there are no Ae. aegypti, see outbreaks in southeast China and Japan that have been vectored by Ae. albopictus. A few other suggestions: 1. The colours/shades on the map do not work well. I have a very hard time seeing the pale yellow. I suggest seeking the following website: (https://colorbrewer2.org/#type=sequential&scheme=BuGn&n=3). And revising. 2. Please state what sort of populations, mosquito or human, when used. Reviewer #2: Olson et al. present results on development of a global map detailing probability estimates of Aedes aegypti occurrence and likelihood for dengue transmission. Overall, the manuscript is well-written and presents results that should be of interest to local/regional health authorities as they look to control arbovirus transmission. I only have some minor comments for the authors to consider: Lines 78-81: these lines highlight a general pattern in the manuscript to alternate between the use of “dengue” and “DEN” – I’d suggest picking one and being consistent. Lines 138-143: it seems important to justify up front why the choice was made to combine monthly information on temperature and precipitation into annual mean temperatures and cumulative rainfall. This seems to be an overly simplistic approach that ignores the known effects on basic biology and population dynamics, e.g., maximum/minimum temperatures and timing and amounts of rainfall. As the authors indicate (lines 255-264) that choice likely impacted the predictability of their results. -------------------- PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No Figure Files: While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Data Requirements: Please note that, as a condition of publication, PLOS' data policy requires that you make available all data used to draw the conclusions outlined in your manuscript. Data must be deposited in an appropriate repository, included within the body of the manuscript, or uploaded as supporting information. This includes all numerical values that were used to generate graphs, histograms etc.. For an example see here: http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001908#s5. Reproducibility: To enhance the reproducibility of your results, PLOS recommends that you deposit laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see https://journals.plos.org/plosntds/s/submission-guidelines#loc-methods 23 Mar 2021 Submitted filename: Response to Reviewers.docx Click here for additional data file. 19 Apr 2021 Dear Dr. Hamer, We are pleased to inform you that your manuscript 'Global patterns of aegyptism without arbovirus' has been provisionally accepted for publication in PLOS Neglected Tropical Diseases. Before your manuscript can be formally accepted you will need to complete some formatting changes, which you will receive in a follow up email. A member of our team will be in touch with a set of requests. Please note that your manuscript will not be scheduled for publication until you have made the required changes, so a swift response is appreciated. IMPORTANT: The editorial review process is now complete. PLOS will only permit corrections to spelling, formatting or significant scientific errors from this point onwards. Requests for major changes, or any which affect the scientific understanding of your work, will cause delays to the publication date of your manuscript. Should you, your institution's press office or the journal office choose to press release your paper, you will automatically be opted out of early publication. We ask that you notify us now if you or your institution is planning to press release the article. All press must be co-ordinated with PLOS. Thank you again for supporting Open Access publishing; we are looking forward to publishing your work in PLOS Neglected Tropical Diseases. Best regards, Mariangela Bonizzoni Associate Editor PLOS Neglected Tropical Diseases Pedro Vasconcelos Deputy Editor PLOS Neglected Tropical Diseases *********************************************************** p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; line-height: 16.0px; font: 14.0px Arial; color: #323333; -webkit-text-stroke: #323333}span.s1 {font-kerning: none Reviewer's Responses to Questions Key Review Criteria Required for Acceptance? As you describe the new analyses required for acceptance, please consider the following: Methods -Are the objectives of the study clearly articulated with a clear testable hypothesis stated? -Is the study design appropriate to address the stated objectives? -Is the population clearly described and appropriate for the hypothesis being tested? -Is the sample size sufficient to ensure adequate power to address the hypothesis being tested? -Were correct statistical analysis used to support conclusions? -Are there concerns about ethical or regulatory requirements being met? Reviewer #1: Approoriate Reviewer #2: (No Response) ********** Results -Does the analysis presented match the analysis plan? -Are the results clearly and completely presented? -Are the figures (Tables, Images) of sufficient quality for clarity? Reviewer #1: Thanks for improving the map Reviewer #2: (No Response) ********** Conclusions -Are the conclusions supported by the data presented? -Are the limitations of analysis clearly described? -Do the authors discuss how these data can be helpful to advance our understanding of the topic under study? -Is public health relevance addressed? Reviewer #1: Yes, and thanks for attending to my suggestions. Reviewer #2: (No Response) ********** Editorial and Data Presentation Modifications? Use this section for editorial suggestions as well as relatively minor modifications of existing data that would enhance clarity. If the only modifications needed are minor and/or editorial, you may wish to recommend “Minor Revision” or “Accept”. Reviewer #1: fine Reviewer #2: (No Response) ********** Summary and General Comments Use this section to provide overall comments, discuss strengths/weaknesses of the study, novelty, significance, general execution and scholarship. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. If requesting major revision, please articulate the new experiments that are needed. Reviewer #1: Most of my concerns were addressed. Thank you. Reviewer #2: The author's have responded appropriately to my previous comments and I support publication of the revised manuscript. ********** PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No 30 Apr 2021 Dear Dr. Hamer, We are delighted to inform you that your manuscript, "Global patterns of aegyptism without arbovirus," has been formally accepted for publication in PLOS Neglected Tropical Diseases. We have now passed your article onto the PLOS Production Department who will complete the rest of the publication process. All authors will receive a confirmation email upon publication. The corresponding author will soon be receiving a typeset proof for review, to ensure errors have not been introduced during production. Please review the PDF proof of your manuscript carefully, as this is the last chance to correct any scientific or type-setting errors. Please note that major changes, or those which affect the scientific understanding of the work, will likely cause delays to the publication date of your manuscript. Note: Proofs for Front Matter articles (Editorial, Viewpoint, Symposium, Review, etc...) are generated on a different schedule and may not be made available as quickly. Soon after your final files are uploaded, the early version of your manuscript will be published online unless you opted out of this process. The date of the early version will be your article's publication date. The final article will be published to the same URL, and all versions of the paper will be accessible to readers. Thank you again for supporting open-access publishing; we are looking forward to publishing your work in PLOS Neglected Tropical Diseases. Best regards, Shaden Kamhawi co-Editor-in-Chief PLOS Neglected Tropical Diseases Paul Brindley co-Editor-in-Chief PLOS Neglected Tropical Diseases
  36 in total

1.  Dengue in China: not a passing problem.

Authors:  ChengFeng Qin; PeiYong Shi
Journal:  Sci China Life Sci       Date:  2014-12-11       Impact factor: 6.038

2.  Ongoing local transmission of dengue in Japan, August to September 2014.

Authors:  Yuzo Arima; Tamano Matsui; Tomoe Shimada; Masahiro Ishikane; Kunio Kawabata; Tomimasa Sunagawa; Hitomi Kinoshita; Tomohiko Takasaki; Yoshio Tsuda; Kyoko Sawabe; Kazunori Oishi
Journal:  Western Pac Surveill Response J       Date:  2014-10-28

3.  An operative dengue risk stratification system in Argentina based on geospatial technology.

Authors:  Ximena Porcasi; Camilo H Rotela; María V Introini; Nicolás Frutos; Sofía Lanfri; Gonzalo Peralta; Estefanía A De Elia; Mario A Lanfri; Carlos M Scavuzzo
Journal:  Geospat Health       Date:  2012-09       Impact factor: 1.212

4.  The potential impacts of 21st century climatic and population changes on human exposure to the virus vector mosquito Aedes aegypti.

Authors:  A J Monaghan; K M Sampson; D F Steinhoff; K C Ernst; K L Ebi; B Jones; M H Hayden
Journal:  Clim Change       Date:  2016-04-25       Impact factor: 4.743

5.  The Importance of Socio-Economic Versus Environmental Risk Factors for Reported Dengue Cases in Java, Indonesia.

Authors:  Siwi P M Wijayanti; Thibaud Porphyre; Margo Chase-Topping; Stephanie M Rainey; Melanie McFarlane; Esther Schnettler; Roman Biek; Alain Kohl
Journal:  PLoS Negl Trop Dis       Date:  2016-09-07

6.  Gridded global datasets for Gross Domestic Product and Human Development Index over 1990-2015.

Authors:  Matti Kummu; Maija Taka; Joseph H A Guillaume
Journal:  Sci Data       Date:  2018-02-06       Impact factor: 6.444

7.  Increased risk for autochthonous vector-borne infections transmitted by Aedes albopictus in continental Europe.

Authors:  Céline M Gossner; Els Ducheyne; Francis Schaffner
Journal:  Euro Surveill       Date:  2018-06

8.  Fluctuations at a low mean temperature accelerate dengue virus transmission by Aedes aegypti.

Authors:  Lauren B Carrington; M Veronica Armijos; Louis Lambrechts; Thomas W Scott
Journal:  PLoS Negl Trop Dis       Date:  2013-04-25

9.  Global temperature constraints on Aedes aegypti and Ae. albopictus persistence and competence for dengue virus transmission.

Authors:  Oliver J Brady; Nick Golding; David M Pigott; Moritz U G Kraemer; Jane P Messina; Robert C Reiner; Thomas W Scott; David L Smith; Peter W Gething; Simon I Hay
Journal:  Parasit Vectors       Date:  2014-07-22       Impact factor: 3.876

10.  On the Seasonal Occurrence and Abundance of the Zika Virus Vector Mosquito Aedes Aegypti in the Contiguous United States.

Authors:  Andrew J Monaghan; Cory W Morin; Daniel F Steinhoff; Olga Wilhelmi; Mary Hayden; Dale A Quattrochi; Michael Reiskind; Alun L Lloyd; Kirk Smith; Chris A Schmidt; Paige E Scalf; Kacey Ernst
Journal:  PLoS Curr       Date:  2016-03-16
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  3 in total

1.  Aedes aegypti abundance, larval indices and risk for dengue virus transmission in Kinondoni district, Tanzania.

Authors:  Baraka L Ngingo; Leonard E G Mboera; Augustino Chengula; Ines Machelle; Mariam R Makange; Michael Msolla; Gaspary O Mwanyika; Sima Rugarabamu; Gerald Misinzo
Journal:  Trop Med Health       Date:  2022-01-04

2.  Dengue, Chikungunya, and Zika: Spatial and Temporal Distribution in Rio de Janeiro State, 2015-2019.

Authors:  Paula Maria Pereira de Almeida; Aline Araújo Nobre; Daniel Cardoso Portela Câmara; Luciana Moura Martins Costa; Izabel Cristina Dos Reis; Mário Sérgio Ribeiro; Cristina Maria Giordano Dias; Tania Ayllón; Nildimar Alves Honório
Journal:  Trop Med Infect Dis       Date:  2022-07-20

3.  Human Neutrophils Present Mild Activation by Zika Virus But Reduce the Infection of Susceptible Cells.

Authors:  Juliana Bernardi Aggio; Bárbara Nery Porto; Claudia Nunes Duarte Dos Santos; Ana Luiza Pamplona Mosimann; Pryscilla Fanini Wowk
Journal:  Front Immunol       Date:  2022-06-07       Impact factor: 8.786

  3 in total

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