Literature DB >> 33948027

A global view of standards for open image data formats and repositories.

Jason R Swedlow1, Pasi Kankaanpää2,3, Ugis Sarkans4, Wojtek Goscinski5, Graham Galloway6, Leonel Malacrida7, Ryan P Sullivan8, Steffen Härtel9, Claire M Brown10, Christopher Wood11, Antje Keppler12, Federica Paina13, Ben Loos13, Sara Zullino14,15, Dario Livio Longo16, Silvio Aime14,15, Shuichi Onami17.   

Abstract

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Year:  2021        PMID： 33948027     DOI： 10.1038/s41592-021-01113-7

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  1 in total

1.  SSBD: a database of quantitative data of spatiotemporal dynamics of biological phenomena.

Authors:  Yukako Tohsato; Kenneth H L Ho; Koji Kyoda; Shuichi Onami
Journal:  Bioinformatics       Date:  2016-07-13       Impact factor: 6.937
  1 in total
  8 in total

Review 1.  Recent advances in the standardization of fluorescence microscopy for quantitative image analysis.

Authors:  Akira Sasaki
Journal:  Biophys Rev       Date:  2021-11-16

2.  Quality assessment in light microscopy for routine use through simple tools and robust metrics.

Authors:  Orestis Faklaris; Leslie Bancel-Vallée; Aurélien Dauphin; Baptiste Monterroso; Perrine Frère; David Geny; Tudor Manoliu; Sylvain de Rossi; Fabrice P Cordelières; Damien Schapman; Roland Nitschke; Julien Cau; Thomas Guilbert
Journal:  J Cell Biol       Date:  2022-09-29       Impact factor: 8.077

3.  Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model.

Authors:  Mathias Hammer; Maximiliaan Huisman; Alessandro Rigano; Ulrike Boehm; James J Chambers; Nathalie Gaudreault; Alison J North; Jaime A Pimentel; Damir Sudar; Peter Bajcsy; Claire M Brown; Alexander D Corbett; Orestis Faklaris; Judith Lacoste; Alex Laude; Glyn Nelson; Roland Nitschke; Farzin Farzam; Carlas S Smith; David Grunwald; Caterina Strambio-De-Castillia
Journal:  Nat Methods       Date:  2021-12       Impact factor: 47.990

Review 4.  Advances in micro-CT imaging of small animals.

Authors:  D P Clark; C T Badea
Journal:  Phys Med       Date:  2021-07-17       Impact factor: 3.119

Review 5.  Data Integration Challenges for Machine Learning in Precision Medicine.

Authors:  Mireya Martínez-García; Enrique Hernández-Lemus
Journal:  Front Med (Lausanne)       Date:  2022-01-25

6.  Standard metadata for 3D microscopy.

Authors:  Alexander J Ropelewski; Megan A Rizzo; Jason R Swedlow; Jan Huisken; Pavel Osten; Neda Khanjani; Kurt Weiss; Vesselina Bakalov; Michelle Engle; Lauren Gridley; Michelle Krzyzanowski; Tom Madden; Deborah Maiese; Meisha Mandal; Justin Waterfield; David Williams; Carol M Hamilton; Wayne Huggins
Journal:  Sci Data       Date:  2022-07-27       Impact factor: 8.501

Review 7.  Computational Methods for Single-Cell Imaging and Omics Data Integration.

Authors:  Ebony Rose Watson; Atefeh Taherian Fard; Jessica Cara Mar
Journal:  Front Mol Biosci       Date:  2022-01-17

8.  A Systematic, Open-Science Framework for Quantification of Cell-Types in Mouse Brain Sections Using Fluorescence Microscopy.

Authors:  Juan C Sanchez-Arias; Micaël Carrier; Simona D Frederiksen; Olga Shevtsova; Chloe McKee; Emma van der Slagt; Elisa Gonçalves de Andrade; Hai Lam Nguyen; Penelope A Young; Marie-Ève Tremblay; Leigh Anne Swayne
Journal:  Front Neuroanat       Date:  2021-12-06       Impact factor: 3.856
  8 in total

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