| Literature DB >> 33947332 |
Mitch van Hensbergen1,2, Casper D J den Heijer3,4,5, Petra Wolffs5, Volker Hackert3, Henriëtte L G Ter Waarbeek3, Bas B Oude Munnink6, Reina S Sikkema6, Edou R Heddema7, Christian J P A Hoebe3,4,5.
Abstract
BACKGROUND: The Dutch province of Limburg borders the German district of Heinsberg, which had a large cluster of COVID-19 cases linked to local carnival activities before any cases were reported in the Netherlands. However, Heinsberg was not included as an area reporting local or community transmission per the national case definition at the time. In early March, two residents from a long-term care facility (LTCF) in Sittard, a Dutch town located in close vicinity to the district of Heinsberg, tested positive for COVID-19. In this study we aimed to determine whether cross-border introduction of the virus took place by analysing the LTCF outbreak in Sittard, both epidemiologically and microbiologically.Entities:
Keywords: Coronavirus; Cross-sectional; Infection control; Nursing home; Observational; SARS-CoV-2; Whole genome sequencing
Mesh:
Year: 2021 PMID: 33947332 PMCID: PMC8094983 DOI: 10.1186/s12879-021-06093-9
Source DB: PubMed Journal: BMC Infect Dis ISSN: 1471-2334 Impact factor: 3.090
Descriptive statistics of resident characteristics by ward level (1–5) from the LTCF (N = 99)
| Ward 1 | Ward 2 | Ward 3 | Ward 4 | Ward 5 | Total | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| n/Na | % | n/Na | % | n/Na | % | n/Na | % | n/Na | % | n/Na | % | |
| Sex | ||||||||||||
| Female | 13/18 | 72 | 12/19 | 63 | 15/18 | 83 | 14/17 | 82 | 18/27 | 66 | 72/99 | 73 |
| Age in years (mean, standard deviation) | 83, 8.8 | 84, 7.5 | 84, 8.5 | 90, 4.1 | 87, 4.7b | 86, 7.1 | ||||||
| Testedc | ||||||||||||
| Yes | 5/18 | 28 | 4/19 | 21 | 14/18 | 78 | 6/17 | 35 | 17/27 | 63 | 46/99 | 47 |
| Positived | 1/5 | 20 | 3/4 | 75 | 7/14 | 50 | 1/6 | 17 | 7/17 | 41 | 19/46 | 41 |
| Asymptomatic | 0/1 | 0 | 2/3 | 67 | 1/7 | 14 | 0/1 | 0 | 0/7 | 0 | 3/19 | 16 |
| Case fatality rate | 0/1 | 0 | 1/3 | 33 | 1/7 | 14 | 0/1 | 0 | 3/7 | 43 | 5/19 | 26 |
a Unless stated otherwise
b Age was missing for 2 residents on ward 5
c Including the random sample of twelve asymptomatic residents
d Based on the number of residents who were tested
An overview of reported symptoms from symptomatic COVID-19 positive residents, March 2020 (n = 16)
a Resident was hospitalized
b Resident has died
Present symptoms are depicted with a black cell. Fever is defined as a temperature of 38.0 degrees Celsius or higher, whereas subfebrile temperature is defined as a temperature below 38.0 degrees Celsius. Three residents were hospitalized before an interview could be conducted, and are depicted with grey cells. Out of the five residents who tested positive for COVID-19 and passed away, four reported any symptoms of disease
Fig. 1CT values of COVID-19 positive tested LTCF residents, March 2020 (n = 19). Oval dots represent two residents with the same CT value
Sequencing names and accession numbers, March 2020 (n = 14)
| Name | Accession number | Location | Collection date | Data source |
|---|---|---|---|---|
| Limburg_7 | EPI_ISL_415464 | Europe / Netherlands / Limburg | March 2020 | GISAID |
| Limburg_13 | EPI_ISL_461001 | Europe / Netherlands / Limburg | March 2020 | GISAID |
| Limburg_14 | EPI_ISL_461002 | Europe / Netherlands / Limburg | March 2020 | GISAID |
| Limburg_15 | EPI_ISL_461003 | Europe / Netherlands / Limburg | March 2020 | GISAID |
| Limburg_66 | EPI_ISL_461051 | Europe / Netherlands / Limburg | March 2020 | GISAID |
| Limburg_67 | EPI_ISL_461052 | Europe / Netherlands / Limburg | March 2020 | GISAID |
| Limburg_68 | EPI_ISL_461053 | Europe / Netherlands / Limburg | March 2020 | GISAID |
| Limburg_69 | EPI_ISL_461054 | Europe / Netherlands / Limburg | March 2020 | GISAID |
| Limburg_70 | EPI_ISL_461055 | Europe / Netherlands / Limburg | March 2020 | GISAID |
| Limburg_71 | EPI_ISL_461056 | Europe / Netherlands / Limburg | March 2020 | GISAID |
| Limburg_72 | EPI_ISL_461057 | Europe / Netherlands / Limburg | March 2020 | GISAID |
| Limburg_73 | EPI_ISL_461058 | Europe / Netherlands / Limburg | March 2020 | GISAID |
| Limburg_74 | EPI_ISL_461059 | Europe / Netherlands / Limburg | March 2020 | GISAID |
| Limburg_75 | EPI_ISL_461060 | Europe / Netherlands / Limburg | March 2020 | GISAID |
Fig. 2Zoom in of the full phylogenetic tree on the Dutch LTCF residents from the LTCF in Sittard, the Netherlands, March 2020 (n = 14). The scale bar represents the number of substitutions per site. Sequences from the Netherlands are depicted in blue, and specific sequences from this study in red. Samples 13, 14, and 15 depicted in red were samples acquired from hospitalized patients in the regional hospital around the same time of the LTCF outbreak. The remaining red samples were acquired from eleven COVID-19 positive LTCF residents
Fig. 3A map of the border region of Sittard and Gangelt showing the cumulative number of COVID-19 cases at four different time points in March 2020, the Netherlands. The different shades of blue represent the cumulative number of confirmed COVID cases per 100.000 residents for the first (days 01–07), second (days 01–14), third (days 01–21), and fourth (days 01–28) week of March. Greyed out regions were considered not relevant for this study. Therefore no colour has been assigned to them. The number of cases are based on the reported number of cases by the Rijksinstituut voor Volksgezondheid en Milieu (RIVM), Robert Koch Institut (RKI) and ScienSano for the Netherlands, Germany, and Belgium respectively. LTCF = long-term care facility. This figure is created by the first author and is owned by the public health service South Limburg