Literature DB >> 33947160

Data Processing Optimization in Untargeted Metabolomics of Urine Using Voigt Lineshape Model Non-Linear Regression Analysis.

Kristina E Haslauer1,2, Philippe Schmitt-Kopplin1,2,3, Silke S Heinzmann1.   

Abstract

Nuclear magnetic resonance (NMR) spectroscopy is well-established to address questions in large-scale untargeted metabolomics. Although several approaches in data processing and analysis are available, significant issues remain. NMR spectroscopy of urine generates information-rich but complex spectra in which signals often overlap. Furthermore, slight changes in pH and salt concentrations cause peak shifting, which introduces, in combination with baseline irregularities, un-informative noise in statistical analysis. Within this work, a straight-forward data processing tool addresses these problems by applying a non-linear curve fitting model based on Voigt function line shape and integration of the underlying peak areas. This method allows a rapid untargeted analysis of urine metabolomics datasets without relying on time-consuming 2D-spectra based deconvolution or information from spectral libraries. The approach is validated with spiking experiments and tested on a human urine 1H dataset compared to conventionally used methods and aims to facilitate metabolomics data analysis.

Entities:  

Keywords:  NMR; data processing; metabolomics; voigt-fitting

Year:  2021        PMID: 33947160     DOI: 10.3390/metabo11050285

Source DB:  PubMed          Journal:  Metabolites        ISSN: 2218-1989


  24 in total

1.  Choice of spectroscopic lineshape model affects metabolite peak areas and area ratios.

Authors:  I Marshall; S D Bruce; J Higinbotham; A MacLullich; J M Wardlaw; K J Ferguson; J Seckl
Journal:  Magn Reson Med       Date:  2000-10       Impact factor: 4.668

2.  Probabilistic quotient normalization as robust method to account for dilution of complex biological mixtures. Application in 1H NMR metabonomics.

Authors:  Frank Dieterle; Alfred Ross; Götz Schlotterbeck; Hans Senn
Journal:  Anal Chem       Date:  2006-07-01       Impact factor: 6.986

3.  Recursive segment-wise peak alignment of biological (1)h NMR spectra for improved metabolic biomarker recovery.

Authors:  Kirill A Veselkov; John C Lindon; Timothy M D Ebbels; Derek Crockford; Vladimir V Volynkin; Elaine Holmes; David B Davies; Jeremy K Nicholson
Journal:  Anal Chem       Date:  2009-01-01       Impact factor: 6.986

Review 4.  Applications of NMR spectroscopy to systems biochemistry.

Authors:  Teresa W-M Fan; Andrew N Lane
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2016-02-06       Impact factor: 9.795

Review 5.  The Emerging Role of Metabolomics in the Diagnosis and Prognosis of Cardiovascular Disease.

Authors:  John R Ussher; Sammy Elmariah; Robert E Gerszten; Jason R B Dyck
Journal:  J Am Coll Cardiol       Date:  2016-12-27       Impact factor: 24.094

Review 6.  NMR-based pharmacometabonomics: A new paradigm for personalised or precision medicine.

Authors:  Jeremy R Everett
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2017-05-06       Impact factor: 9.795

7.  BATMAN--an R package for the automated quantification of metabolites from nuclear magnetic resonance spectra using a Bayesian model.

Authors:  Jie Hao; William Astle; Maria De Iorio; Timothy M D Ebbels
Journal:  Bioinformatics       Date:  2012-05-26       Impact factor: 6.937

Review 8.  Analytical methods in untargeted metabolomics: state of the art in 2015.

Authors:  Arnald Alonso; Sara Marsal; Antonio Julià
Journal:  Front Bioeng Biotechnol       Date:  2015-03-05

9.  MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data.

Authors:  Kenneth Haug; Reza M Salek; Pablo Conesa; Janna Hastings; Paula de Matos; Mark Rijnbeek; Tejasvi Mahendraker; Mark Williams; Steffen Neumann; Philippe Rocca-Serra; Eamonn Maguire; Alejandra González-Beltrán; Susanna-Assunta Sansone; Julian L Griffin; Christoph Steinbeck
Journal:  Nucleic Acids Res       Date:  2012-10-29       Impact factor: 16.971

Review 10.  Recommendations and Standardization of Biomarker Quantification Using NMR-Based Metabolomics with Particular Focus on Urinary Analysis.

Authors:  Abdul-Hamid Emwas; Raja Roy; Ryan T McKay; Danielle Ryan; Lorraine Brennan; Leonardo Tenori; Claudio Luchinat; Xin Gao; Ana Carolina Zeri; G A Nagana Gowda; Daniel Raftery; Christoph Steinbeck; Reza M Salek; David S Wishart
Journal:  J Proteome Res       Date:  2016-01-20       Impact factor: 4.466

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  1 in total

Review 1.  Chronic Kidney Disease Cohort Studies: A Guide to Metabolome Analyses.

Authors:  Ulla T Schultheiss; Robin Kosch; Fruzsina Kotsis; Michael Altenbuchinger; Helena U Zacharias
Journal:  Metabolites       Date:  2021-07-16
  1 in total

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