Literature DB >> 33946372

Integrative Systems Biology Approaches to Identify Potential Biomarkers and Pathways of Cervical Cancer.

Arafat Rahman Oany1,2, Mamun Mia1,3, Tahmina Pervin4, Salem Ali Alyami5, Mohammad Ali Moni6.   

Abstract

Nowadays, cervical cancer (CC) is treated as the leading cancer among women throughout the world. Despite effective vaccination and improved surgery and treatment, CC retains its fatality rate of about half of the infected population globally. The major screening biomarkers and therapeutic target identification have now become a global concern. In the present study, we have employed systems biology approaches to retrieve the potential biomarkers and pathways from transcriptomic profiling. Initially, we have identified 76 of each up-regulated and down-regulated gene from a total of 4643 differentially expressed genes. The up-regulatory genes mainly concentrate on immune-inflammatory responses, and the down-regulatory genes are on receptor binding and gamma-glutamyltransferase. The involved pathways associated with these genes were also assessed through pathway enrichment, and we mainly focused on different cancer pathways, immunoresponse, and cell cycle pathways. After the subsequent enrichment of these genes, we have identified 12 hub genes, which play a crucial role in CC and are verified by expression profile analysis. From our study, we have found that genes LILRB2 and CYBB play crucial roles in CC, as reported here for the first time. Furthermore, the survivability of the hub genes was also assessed, and among them, finally, CXCR4 has been identified as one of the most potential differentially expressed genes that might play a vital role in the survival of CC patients. Thus, CXCR4 could be used as a prognostic and/or diagnostic biomarker and a drug target for CC.

Entities:  

Keywords:  cervical cancer; differentially expressed genes; prognostic biomarker; systems biology

Year:  2021        PMID: 33946372     DOI: 10.3390/jpm11050363

Source DB:  PubMed          Journal:  J Pers Med        ISSN: 2075-4426


  56 in total

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Authors:  Donna Dehn; Kathleen C Torkko; Kenneth R Shroyer
Journal:  Cancer       Date:  2007-02-25       Impact factor: 6.860

2.  CXCR4 regulates growth of both primary and metastatic breast cancer.

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Journal:  Cancer Res       Date:  2004-12-01       Impact factor: 12.701

3.  Study on CXCR4/SDF-1alpha axis in lymph node metastasis of cervical squamous cell carcinoma.

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Journal:  Int J Gynecol Cancer       Date:  2007 Mar-Apr       Impact factor: 3.437

4.  DAVID-WS: a stateful web service to facilitate gene/protein list analysis.

Authors:  Xiaoli Jiao; Brad T Sherman; Da Wei Huang; Robert Stephens; Michael W Baseler; H Clifford Lane; Richard A Lempicki
Journal:  Bioinformatics       Date:  2012-04-27       Impact factor: 6.937

5.  STRING v10: protein-protein interaction networks, integrated over the tree of life.

Authors:  Damian Szklarczyk; Andrea Franceschini; Stefan Wyder; Kristoffer Forslund; Davide Heller; Jaime Huerta-Cepas; Milan Simonovic; Alexander Roth; Alberto Santos; Kalliopi P Tsafou; Michael Kuhn; Peer Bork; Lars J Jensen; Christian von Mering
Journal:  Nucleic Acids Res       Date:  2014-10-28       Impact factor: 16.971

6.  Epigenetic silencing of CXCR4 promotes loss of cell adhesion in cervical cancer.

Authors:  Suresh Singh Yadav; Shyam Babu Prasad; Mitali Das; Soni Kumari; Lakshmi Kant Pandey; Sunita Singh; Satyajit Pradhan; Gopeshwar Narayan
Journal:  Biomed Res Int       Date:  2014-07-10       Impact factor: 3.411

7.  MiR-34a and miR-206 act as novel prognostic and therapy biomarkers in cervical cancer.

Authors:  Ai-Hua Chen; Yu-E Qin; Wen-Fan Tang; Jing Tao; Hua-Mei Song; Manzhen Zuo
Journal:  Cancer Cell Int       Date:  2017-06-09       Impact factor: 5.722

8.  Genetic signature related to heme-hemoglobin metabolism pathway in sepsis secondary to pneumonia.

Authors:  Giuseppe Gianini Figuerêido Leite; Brendon P Scicluna; Tom van der Poll; Reinaldo Salomão
Journal:  NPJ Syst Biol Appl       Date:  2019-08-01

9.  Intravaginal TLR agonists increase local vaccine-specific CD8 T cells and human papillomavirus-associated genital-tumor regression in mice.

Authors:  S Domingos-Pereira; L Decrausaz; L Derré; M Bobst; P Romero; J T Schiller; P Jichlinski; D Nardelli-Haefliger
Journal:  Mucosal Immunol       Date:  2012-09-12       Impact factor: 7.313

10.  Downregulation of the CXCR4 receptor inhibits cervical carcinoma metastatic behavior in vitro and in vivo.

Authors:  Małgorzata Sekuła; Katarzyna Miekus; Marcin Majka
Journal:  Int J Oncol       Date:  2014-04-11       Impact factor: 5.650

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  4 in total

1.  Immune-Related Protein Interaction Network in Severe COVID-19 Patients toward the Identification of Key Proteins and Drug Repurposing.

Authors:  Pakorn Sagulkoo; Apichat Suratanee; Kitiporn Plaimas
Journal:  Biomolecules       Date:  2022-05-11

2.  Bioinformatics Screening of Potential Biomarkers from mRNA Expression Profiles to Discover Drug Targets and Agents for Cervical Cancer.

Authors:  Md Selim Reza; Md Harun-Or-Roshid; Md Ariful Islam; Md Alim Hossen; Md Tofazzal Hossain; Shengzhong Feng; Wenhui Xi; Md Nurul Haque Mollah; Yanjie Wei
Journal:  Int J Mol Sci       Date:  2022-04-02       Impact factor: 5.923

3.  Metadata analysis to explore hub of the hub-genes highlighting their functions, pathways and regulators for cervical cancer diagnosis and therapies.

Authors:  Md Selim Reza; Md Alim Hossen; Md Harun-Or-Roshid; Mst Ayesha Siddika; Md Hadiul Kabir; Md Nurul Haque Mollah
Journal:  Discov Oncol       Date:  2022-08-22

Review 4.  A Bioinformatics-Assisted Review on Iron Metabolism and Immune System to Identify Potential Biomarkers of Exercise Stress-Induced Immunosuppression.

Authors:  Diego A Bonilla; Yurany Moreno; Jorge L Petro; Diego A Forero; Salvador Vargas-Molina; Adrián Odriozola-Martínez; Carlos A Orozco; Jeffrey R Stout; Eric S Rawson; Richard B Kreider
Journal:  Biomedicines       Date:  2022-03-21
  4 in total

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