Literature DB >> 33938448

Decoding the matrix: multiomics reveals host-microbe biomarker for inflammatory bowel disease.

Monica Viladomiu, Randy S Longman.   

Abstract

Inflammatory bowel disease (IBD) is a chronic inflammatory disease of the intestine associated with genetic susceptibility and alterations in the intestinal microbiome. Multiomics data developed and analyzed over the last several decades have yielded an unprecedented amount of genetic and microbial data. But how do we pinpoint mechanistic insight into the host-microbe relationship that will ultimately enable better care for patients with IBD? In this issue of the JCI, Grasberger et al. undertook a major decoding effort to decipher this multiomic data matrix. The authors analyzed anonymized data from more than 2800 individuals to discover a link between heterozygous carriers of deleterious DUOX2 variants and high levels of plasma IL-17C. These findings provide an example of how harnessing big data can drive mechanistic discovery to define disease biomarkers that have the potential to improve clinical care in IBD.

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Year:  2021        PMID: 33938448      PMCID: PMC8087194          DOI: 10.1172/JCI148902

Source DB:  PubMed          Journal:  J Clin Invest        ISSN: 0021-9738            Impact factor:   14.808


  6 in total

1.  Blood-Derived DNA Methylation Signatures of Crohn's Disease and Severity of Intestinal Inflammation.

Authors:  Hari K Somineni; Suresh Venkateswaran; Varun Kilaru; Urko M Marigorta; Angela Mo; David T Okou; Richard Kellermayer; Kajari Mondal; Dawayland Cobb; Thomas D Walters; Anne Griffiths; Joshua D Noe; Wallace V Crandall; Joel R Rosh; David R Mack; Melvin B Heyman; Susan S Baker; Michael C Stephens; Robert N Baldassano; James F Markowitz; Marla C Dubinsky; Judy Cho; Jeffrey S Hyams; Lee A Denson; Greg Gibson; David J Cutler; Karen N Conneely; Alicia K Smith; Subra Kugathasan
Journal:  Gastroenterology       Date:  2019-02-16       Impact factor: 22.682

2.  Chemotaxis Allows Bacteria To Overcome Host-Generated Reactive Oxygen Species That Constrain Gland Colonization.

Authors:  Kieran D Collins; Shuai Hu; Helmut Grasberger; John Y Kao; Karen M Ottemann
Journal:  Infect Immun       Date:  2018-04-23       Impact factor: 3.441

3.  Defensive Mutualism Rescues NADPH Oxidase Inactivation in Gut Infection.

Authors:  Gratiela Pircalabioru; Gabriella Aviello; Malgorzata Kubica; Alexander Zhdanov; Marie-Helene Paclet; Lorraine Brennan; Rosanne Hertzberger; Dmitri Papkovsky; Billy Bourke; Ulla G Knaus
Journal:  Cell Host Microbe       Date:  2016-05-11       Impact factor: 21.023

4.  Dual oxidases control release of hydrogen peroxide by the gastric epithelium to prevent Helicobacter felis infection and inflammation in mice.

Authors:  Helmut Grasberger; Mohamad El-Zaatari; Duyen T Dang; Juanita L Merchant
Journal:  Gastroenterology       Date:  2013-07-13       Impact factor: 22.682

5.  DUOX2 variants associate with preclinical disturbances in microbiota-immune homeostasis and increased inflammatory bowel disease risk.

Authors:  Helmut Grasberger; Andrew T Magis; Elisa Sheng; Matthew P Conomos; Min Zhang; Lea S Garzotto; Guoqing Hou; Shrinivas Bishu; Hiroko Nagao-Kitamoto; Mohamad El-Zaatari; Sho Kitamoto; Nobuhiko Kamada; Ryan W Stidham; Yasutada Akiba; Jonathan Kaunitz; Yael Haberman; Subra Kugathasan; Lee A Denson; Gilbert S Omenn; John Y Kao
Journal:  J Clin Invest       Date:  2021-05-03       Impact factor: 14.808

6.  Serum Protein Biomarkers of Fibrosis Aid in Risk Stratification of Future Stricturing Complications in Pediatric Crohn's Disease.

Authors:  Jing Wu; David M Lubman; Subra Kugathasan; Lee A Denson; Jeffrey S Hyams; Marla C Dubinsky; Anne M Griffiths; Robert N Baldassano; Joshua D Noe; Shervin Rabizadeh; Ajay S Gulati; Joel R Rosh; Wallace V Crandall; Peter D R Higgins; Ryan W Stidham
Journal:  Am J Gastroenterol       Date:  2019-05       Impact factor: 10.864

  6 in total
  1 in total

1.  Network pharmacology and molecular docking reveal zedoary turmeric-trisomes in Inflammatory bowel disease with intestinal fibrosis.

Authors:  Lie Zheng; Yong-Yi Ji; Yan-Cheng Dai; Xin-Li Wen; Shi-Cheng Wu
Journal:  World J Clin Cases       Date:  2022-08-06       Impact factor: 1.534

  1 in total

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