Literature DB >> 33937745

The Promise of AI for DILI Prediction.

Andreu Vall1,2, Yogesh Sabnis3, Jiye Shi3, Reiner Class3, Sepp Hochreiter1,2,4, Günter Klambauer1,2.   

Abstract

Drug-induced liver injury (DILI) is a common reason for the withdrawal of a drug from the market. Early assessment of DILI risk is an essential part of drug development, but it is rendered challenging prior to clinical trials by the complex factors that give rise to liver damage. Artificial intelligence (AI) approaches, particularly those building on machine learning, range from random forests to more recent techniques such as deep learning, and provide tools that can analyze chemical compounds and accurately predict some of their properties based purely on their structure. This article reviews existing AI approaches to predicting DILI and elaborates on the challenges that arise from the as yet limited availability of data. Future directions are discussed focusing on rich data modalities, such as 3D spheroids, and the slow but steady increase in drugs annotated with DILI risk labels.
Copyright © 2021 Vall, Sabnis, Shi, Class, Hochreiter and Klambauer.

Entities:  

Keywords:  artificial intelligence; deep learning; drug-induced liver injury; machine learning; neural networks

Year:  2021        PMID: 33937745      PMCID: PMC8080874          DOI: 10.3389/frai.2021.638410

Source DB:  PubMed          Journal:  Front Artif Intell        ISSN: 2624-8212


  74 in total

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Authors:  Chun Wei Yap
Journal:  J Comput Chem       Date:  2010-12-17       Impact factor: 3.376

2.  Using transcriptomics to guide lead optimization in drug discovery projects: Lessons learned from the QSTAR project.

Authors:  Bie Verbist; Günter Klambauer; Liesbet Vervoort; Willem Talloen; Ziv Shkedy; Olivier Thas; Andreas Bender; Hinrich W H Göhlmann; Sepp Hochreiter
Journal:  Drug Discov Today       Date:  2015-01-10       Impact factor: 7.851

3.  Moving beyond Binary Predictions of Human Drug-Induced Liver Injury (DILI) toward Contrasting Relative Risk Potential.

Authors:  Michael D Aleo; Falgun Shah; Scott Allen; Hugh A Barton; Chester Costales; Sarah Lazzaro; Louis Leung; Andrea Nilson; R Scott Obach; A David Rodrigues; Yvonne Will
Journal:  Chem Res Toxicol       Date:  2019-10-07       Impact factor: 3.739

4.  Deep Learning for Drug-Induced Liver Injury.

Authors:  Youjun Xu; Ziwei Dai; Fangjin Chen; Shuaishi Gao; Jianfeng Pei; Luhua Lai
Journal:  J Chem Inf Model       Date:  2015-10-13       Impact factor: 4.956

5.  Dermatologist-level classification of skin cancer with deep neural networks.

Authors:  Andre Esteva; Brett Kuprel; Roberto A Novoa; Justin Ko; Susan M Swetter; Helen M Blau; Sebastian Thrun
Journal:  Nature       Date:  2017-01-25       Impact factor: 49.962

6.  High lipophilicity and high daily dose of oral medications are associated with significant risk for drug-induced liver injury.

Authors:  Minjun Chen; Jürgen Borlak; Weida Tong
Journal:  Hepatology       Date:  2013-05-27       Impact factor: 17.425

7.  A Next Generation Connectivity Map: L1000 Platform and the First 1,000,000 Profiles.

Authors:  Aravind Subramanian; Rajiv Narayan; Steven M Corsello; David D Peck; Ted E Natoli; Xiaodong Lu; Joshua Gould; John F Davis; Andrew A Tubelli; Jacob K Asiedu; David L Lahr; Jodi E Hirschman; Zihan Liu; Melanie Donahue; Bina Julian; Mariya Khan; David Wadden; Ian C Smith; Daniel Lam; Arthur Liberzon; Courtney Toder; Mukta Bagul; Marek Orzechowski; Oana M Enache; Federica Piccioni; Sarah A Johnson; Nicholas J Lyons; Alice H Berger; Alykhan F Shamji; Angela N Brooks; Anita Vrcic; Corey Flynn; Jacqueline Rosains; David Y Takeda; Roger Hu; Desiree Davison; Justin Lamb; Kristin Ardlie; Larson Hogstrom; Peyton Greenside; Nathanael S Gray; Paul A Clemons; Serena Silver; Xiaoyun Wu; Wen-Ning Zhao; Willis Read-Button; Xiaohua Wu; Stephen J Haggarty; Lucienne V Ronco; Jesse S Boehm; Stuart L Schreiber; John G Doench; Joshua A Bittker; David E Root; Bang Wong; Todd R Golub
Journal:  Cell       Date:  2017-11-30       Impact factor: 41.582

Review 8.  Drug-induced liver injury severity and toxicity (DILIst): binary classification of 1279 drugs by human hepatotoxicity.

Authors:  Shraddha Thakkar; Ting Li; Zhichao Liu; Leihong Wu; Ruth Roberts; Weida Tong
Journal:  Drug Discov Today       Date:  2019-11-01       Impact factor: 7.851

9.  An In Silico Model for Predicting Drug-Induced Hepatotoxicity.

Authors:  Shuaibing He; Tianyuan Ye; Ruiying Wang; Chenyang Zhang; Xuelian Zhang; Guibo Sun; Xiaobo Sun
Journal:  Int J Mol Sci       Date:  2019-04-17       Impact factor: 5.923

10.  WITHDRAWN--a resource for withdrawn and discontinued drugs.

Authors:  Vishal B Siramshetty; Janette Nickel; Christian Omieczynski; Bjoern-Oliver Gohlke; Malgorzata N Drwal; Robert Preissner
Journal:  Nucleic Acids Res       Date:  2015-11-08       Impact factor: 16.971

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  7 in total

1.  An Algorithm Framework for Drug-Induced Liver Injury Prediction Based on Genetic Algorithm and Ensemble Learning.

Authors:  Bowei Yan; Xiaona Ye; Jing Wang; Junshan Han; Lianlian Wu; Song He; Kunhong Liu; Xiaochen Bo
Journal:  Molecules       Date:  2022-05-12       Impact factor: 4.927

2.  Semi-automated approach for generation of biological networks on drug-induced cholestasis, steatosis, hepatitis, and cirrhosis.

Authors:  Hyun Kil Shin; Oana Florean; Barry Hardy; Tatyana Doktorova; Myung-Gyun Kang
Journal:  Toxicol Res       Date:  2022-03-03

3.  Artificial Intelligence-Assisted Image Analysis of Acetaminophen-Induced Acute Hepatic Injury in Sprague-Dawley Rats.

Authors:  Eun Bok Baek; Ji-Hee Hwang; Heejin Park; Byoung-Seok Lee; Hwa-Young Son; Yong-Bum Kim; Sang-Yeop Jun; Jun Her; Jaeku Lee; Jae-Woo Cho
Journal:  Diagnostics (Basel)       Date:  2022-06-16

Review 4.  Roles of Cofactors in Drug-Induced Liver Injury: Drug Metabolism and Beyond.

Authors:  Ruizhi Gu; Alina Liang; Grace Liao; Isabelle To; Amina Shehu; Xiaochao Ma
Journal:  Drug Metab Dispos       Date:  2022-02-27       Impact factor: 3.579

5.  The Use of Artificial Intelligence in Complementary and Alternative Medicine: A Systematic Scoping Review.

Authors:  Hongmin Chu; Seunghwan Moon; Jeongsu Park; Seongjun Bak; Youme Ko; Bo-Young Youn
Journal:  Front Pharmacol       Date:  2022-04-01       Impact factor: 5.988

6.  Deriving time-concordant event cascades from gene expression data: A case study for Drug-Induced Liver Injury (DILI).

Authors:  Anika Liu; Namshik Han; Jordi Munoz-Muriedas; Andreas Bender
Journal:  PLoS Comput Biol       Date:  2022-06-10       Impact factor: 4.779

Review 7.  Mitochondria as the Target of Hepatotoxicity and Drug-Induced Liver Injury: Molecular Mechanisms and Detection Methods.

Authors:  Milos Mihajlovic; Mathieu Vinken
Journal:  Int J Mol Sci       Date:  2022-03-18       Impact factor: 5.923

  7 in total

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