Literature DB >> 33936764

Crystal structure, Hirshfeld surface analysis and density functional theory study of 6-methyl-2-[(5-methyl-isoxazol-3-yl)meth-yl]-1H-benzimidazole.

Ahlam Idrissi1, Karim Chkirate1, Nadeem Abad2, Bahia Djerrari1, Redouane Achour1, El Mokhtar Essassi1, Luc Van Meervelt3.   

Abstract

In the title mol-ecule, C13H13N3O, the isoxazole ring is inclined to the benzimidazole ring at a dihedral angle of 69.28 (14)°. In the crystal, N-H⋯N hydrogen bonds between neighboring benzimidazole rings form chains along the a-axis direction. Hirshfeld surface analysis indicates that the most important contributions to the crystal packing are from H⋯H (48.8%), H⋯C/C⋯H (20.9%) and H⋯N/N⋯H (19.3%) inter-actions. The optimized structure calculated using density functional theory at the B3LYP/6-311 G(d,p) level is compared with the experimentally determined structure in the solid state. The calculated highest occupied mol-ecular orbital (HOMO) and lowest unoccupied mol-ecular orbital (LUMO) energy gap is 4.9266 eV. © Idrissi et al. 2021.

Entities:  

Keywords:  Hirshfeld surface analysis; benzimidazole; crystal structure; density functional theory; hydrogen bond

Year:  2021        PMID: 33936764      PMCID: PMC8025869          DOI: 10.1107/S2056989021002723

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


  12 in total

1.  Towards quantitative analysis of intermolecular interactions with Hirshfeld surfaces.

Authors:  Joshua J McKinnon; Dylan Jayatilaka; Mark A Spackman
Journal:  Chem Commun (Camb)       Date:  2007-10-07       Impact factor: 6.222

2.  Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1988-01-15

3.  Design, molecular docking and synthesis of novel 5,6-dichloro-2-methyl-1H-benzimidazole derivatives as potential urease enzyme inhibitors.

Authors:  Emre Menteşe; Mustafa Emirik; Bahar Bilgin Sökmen
Journal:  Bioorg Chem       Date:  2019-01-28       Impact factor: 5.275

4.  5-Methyl-3-[1-(2-pyridylmeth-yl)-1H-benzimidazol-2-ylmeth-yl]isoxazole.

Authors:  Mohamadou Lamine Doumbia; Rachid Bouhfid; El Mokhtar Essassi; Lahcen El Ammari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-10

5.  Structure-guided discovery of a novel, potent, and orally bioavailable 3,5-dimethylisoxazole aryl-benzimidazole BET bromodomain inhibitor.

Authors:  David Sperandio; Vangelis Aktoudianakis; Kerim Babaoglu; Xiaowu Chen; Kristyna Elbel; Gregory Chin; Britton Corkey; Jinfa Du; Bob Jiang; Tetsuya Kobayashi; Richard Mackman; Ruben Martinez; Hai Yang; Jeff Zablocki; Saritha Kusam; Kim Jordan; Heather Webb; Jamie G Bates; Latesh Lad; Michael Mish; Anita Niedziela-Majka; Sammy Metobo; Annapurna Sapre; Magdeleine Hung; Debi Jin; Wanchi Fung; Elaine Kan; Gene Eisenberg; Nate Larson; Zachary E R Newby; Eric Lansdon; Chin Tay; Richard M Neve; Sophia L Shevick; David G Breckenridge
Journal:  Bioorg Med Chem       Date:  2018-11-15       Impact factor: 3.641

6.  Novel Co(II) and Cu(II) coordination complexes constructed from pyrazole-acetamide: Effect of hydrogen bonding on the self assembly process and antioxidant activity.

Authors:  Karim Chkirate; Saad Fettach; Khalid Karrouchi; Nada Kheira Sebbar; El Mokhtar Essassi; Joel T Mague; Smaail Radi; My El Abbes Faouzi; N N Adarsh; Yann Garcia
Journal:  J Inorg Biochem       Date:  2018-11-09       Impact factor: 4.155

7.  Design and synthesis of positional isomers of 5 and 6-bromo-1-[(phenyl)sulfonyl]-2-[(4-nitrophenoxy)methyl]-1H-benzimidazoles as possible antimicrobial and antitubercular agents.

Authors:  P Karuvalam Ranjith; P Rajeesh; Karickal R Haridas; Nayak K Susanta; Tayur N Guru Row; R Rishikesan; N Suchetha Kumari
Journal:  Bioorg Med Chem Lett       Date:  2013-07-04       Impact factor: 2.823

8.  SHELXT - integrated space-group and crystal-structure determination.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A Found Adv       Date:  2015-01-01       Impact factor: 2.290

9.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

10.  The Cambridge Structural Database.

Authors:  Colin R Groom; Ian J Bruno; Matthew P Lightfoot; Suzanna C Ward
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2016-04-01
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