Literature DB >> 33936468

A Reliable Machine Learning Approach applied to Single-Cell Classification in Acute Myeloid Leukemia.

Giovanna Nicora1, Riccardo Bellazzi1.   

Abstract

Machine Learning research applied to the medical field is increasing. However, few of the proposed approaches are actually deployed in clinical settings. One reason is that current methods may not be able to generalize on new unseen instances which differ from the training population, thus providing unreliable classifications. Approaches to measure classification reliability could be useful to assess whether to trust prediction on new cases. Here, we propose a new reliability measure based on the similarity of a new instance to the training set. In particular, we evaluate whether this example would be selected as informative by an instance selection method, in comparison with the available training set. We show that this method distinguishes reliable examples, for which we can trust the classifier's prediction, from unreliable ones, both on simulated data and in a real-case scenario, to distinguish tumor and normal cells in Acute Myeloid Leukemia patients. ©2020 AMIA - All rights reserved.

Entities:  

Year:  2021        PMID: 33936468      PMCID: PMC8075526     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  7 in total

Review 1.  Precision Medicine: From Science To Value.

Authors:  Geoffrey S Ginsburg; Kathryn A Phillips
Journal:  Health Aff (Millwood)       Date:  2018-05       Impact factor: 6.301

2.  Single-Cell RNA-Seq Reveals AML Hierarchies Relevant to Disease Progression and Immunity.

Authors:  Peter van Galen; Volker Hovestadt; Marc H Wadsworth Ii; Travis K Hughes; Gabriel K Griffin; Sofia Battaglia; Julia A Verga; Jason Stephansky; Timothy J Pastika; Jennifer Lombardi Story; Geraldine S Pinkus; Olga Pozdnyakova; Ilene Galinsky; Richard M Stone; Timothy A Graubert; Alex K Shalek; Jon C Aster; Andrew A Lane; Bradley E Bernstein
Journal:  Cell       Date:  2019-02-28       Impact factor: 41.582

Review 3.  High-performance medicine: the convergence of human and artificial intelligence.

Authors:  Eric J Topol
Journal:  Nat Med       Date:  2019-01-07       Impact factor: 53.440

4.  SCANPY: large-scale single-cell gene expression data analysis.

Authors:  F Alexander Wolf; Philipp Angerer; Fabian J Theis
Journal:  Genome Biol       Date:  2018-02-06       Impact factor: 13.583

5.  Development and Validation of a Deep Learning-Based Automated Detection Algorithm for Major Thoracic Diseases on Chest Radiographs.

Authors:  Eui Jin Hwang; Sunggyun Park; Kwang-Nam Jin; Jung Im Kim; So Young Choi; Jong Hyuk Lee; Jin Mo Goo; Jaehong Aum; Jae-Joon Yim; Julien G Cohen; Gilbert R Ferretti; Chang Min Park
Journal:  JAMA Netw Open       Date:  2019-03-01

6.  Single-Cell Ssequencing in Cancer: Recent Applications to Immunogenomics and Multi-omics Tools.

Authors:  Michael C Sierant; Jungmin Choi
Journal:  Genomics Inform       Date:  2018-12-28

7.  Key challenges for delivering clinical impact with artificial intelligence.

Authors:  Christopher J Kelly; Alan Karthikesalingam; Mustafa Suleyman; Greg Corrado; Dominic King
Journal:  BMC Med       Date:  2019-10-29       Impact factor: 8.775

  7 in total

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