Literature DB >> 33936462

VANTAGE6: an open source priVAcy preserviNg federaTed leArninG infrastructurE for Secure Insight eXchange.

Arturo Moncada-Torres1, Frank Martin1, Melle Sieswerda1, Johan Van Soest2, Gijs Geleijnse1.   

Abstract

Answering many of the research questions in the field of cancer informatics requires incorporating and centralizing data that are hosted by different parties. Federated Learning (FL) has emerged as a new approach in which a global model can be generated without disclosing private patient data by keeping them at their original location. Flexible, user-friendly, and robust infrastructures are crucial for bringing FL solutions to the day-to-day work of the cancer epidemiologist. In this paper, we present an open source priVAcy preserviNg federaTed leArninG infrastructurE for Secure Insight eXchange, VANTAGE6. We provide a detailed description of its conceptual design, modular architecture, and components. We also show a few examples where VANTAGE6 has been successfully used in research on observational cancer data. Developing and deploying technology to support federated analyses - such as VANTAGE6 - will pave the way for the adoption and mainstream practice of this new approach for analyzing decentralized data. ©2020 AMIA - All rights reserved.

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Year:  2021        PMID: 33936462      PMCID: PMC8075508     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  6 in total

1.  WebDISCO: a web service for distributed cox model learning without patient-level data sharing.

Authors:  Chia-Lun Lu; Shuang Wang; Zhanglong Ji; Yuan Wu; Li Xiong; Xiaoqian Jiang; Lucila Ohno-Machado
Journal:  J Am Med Inform Assoc       Date:  2015-07-09       Impact factor: 4.497

2.  Observational health research in Europe: understanding the General Data Protection Regulation and underlying debate.

Authors:  Evert-Ben van Veen
Journal:  Eur J Cancer       Date:  2018-10-15       Impact factor: 9.162

3.  DataSHIELD: taking the analysis to the data, not the data to the analysis.

Authors:  Amadou Gaye; Yannick Marcon; Julia Isaeva; Philippe LaFlamme; Andrew Turner; Elinor M Jones; Joel Minion; Andrew W Boyd; Christopher J Newby; Marja-Liisa Nuotio; Rebecca Wilson; Oliver Butters; Barnaby Murtagh; Ipek Demir; Dany Doiron; Lisette Giepmans; Susan E Wallace; Isabelle Budin-Ljøsne; Carsten Oliver Schmidt; Paolo Boffetta; Mathieu Boniol; Maria Bota; Kim W Carter; Nick deKlerk; Chris Dibben; Richard W Francis; Tero Hiekkalinna; Kristian Hveem; Kirsti Kvaløy; Sean Millar; Ivan J Perry; Annette Peters; Catherine M Phillips; Frank Popham; Gillian Raab; Eva Reischl; Nuala Sheehan; Melanie Waldenberger; Markus Perola; Edwin van den Heuvel; John Macleod; Bartha M Knoppers; Ronald P Stolk; Isabel Fortier; Jennifer R Harris; Bruce H R Woffenbuttel; Madeleine J Murtagh; Vincent Ferretti; Paul R Burton
Journal:  Int J Epidemiol       Date:  2014-09-26       Impact factor: 7.196

Review 4.  Cancer incidence and mortality patterns in Europe: Estimates for 40 countries and 25 major cancers in 2018.

Authors:  J Ferlay; M Colombet; I Soerjomataram; T Dyba; G Randi; M Bettio; A Gavin; O Visser; F Bray
Journal:  Eur J Cancer       Date:  2018-08-09       Impact factor: 9.162

5.  VERTIcal Grid lOgistic regression (VERTIGO).

Authors:  Yong Li; Xiaoqian Jiang; Shuang Wang; Hongkai Xiong; Lucila Ohno-Machado
Journal:  J Am Med Inform Assoc       Date:  2015-11-09       Impact factor: 4.497

6.  The FAIR Guiding Principles for scientific data management and stewardship.

Authors:  Mark D Wilkinson; Michel Dumontier; I Jsbrand Jan Aalbersberg; Gabrielle Appleton; Myles Axton; Arie Baak; Niklas Blomberg; Jan-Willem Boiten; Luiz Bonino da Silva Santos; Philip E Bourne; Jildau Bouwman; Anthony J Brookes; Tim Clark; Mercè Crosas; Ingrid Dillo; Olivier Dumon; Scott Edmunds; Chris T Evelo; Richard Finkers; Alejandra Gonzalez-Beltran; Alasdair J G Gray; Paul Groth; Carole Goble; Jeffrey S Grethe; Jaap Heringa; Peter A C 't Hoen; Rob Hooft; Tobias Kuhn; Ruben Kok; Joost Kok; Scott J Lusher; Maryann E Martone; Albert Mons; Abel L Packer; Bengt Persson; Philippe Rocca-Serra; Marco Roos; Rene van Schaik; Susanna-Assunta Sansone; Erik Schultes; Thierry Sengstag; Ted Slater; George Strawn; Morris A Swertz; Mark Thompson; Johan van der Lei; Erik van Mulligen; Jan Velterop; Andra Waagmeester; Peter Wittenburg; Katherine Wolstencroft; Jun Zhao; Barend Mons
Journal:  Sci Data       Date:  2016-03-15       Impact factor: 6.444

  6 in total

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