Literature DB >> 33936395

Using Natural Language Processing and Machine Learning to Identify Hospitalized Patients with Opioid Use Disorder.

Suzanne V Blackley1, Erin MacPhaul2, Bianca Martin3, Wenyu Song2,4, Joji Suzuki3, Li Zhou2,4.   

Abstract

Opioid use disorder (OUD) represents a global public health crisis that challenges classic clinical decision making. As existing hospital screening methods are resource-intensive, patients with OUD are significantly under-detected. An automated and accurate approach is needed to improve OUD identification so that appropriate care can be provided to these patients in a timely fashion. In this study, we used a large-scale clinical database from Mass General Brigham (MGB; formerly Partners HealthCare) to develop an OUD patient identification algorithm, using multiple machine learning methods. Working closely with an addiction psychiatrist, we developed a set of hand-crafted rules for identifying information suggestive of OUD from free-text clinical notes. We implemented a natural language processing (NLP)-based classification algorithm within the Medical Text Extraction, Reasoning and Mapping System (MTERMS) tool suite to automatically label patients as positive or negative for OUD based on these rules. We further used the NLP output as features to build multiple machine learning and a neural classifier. Our methods yielded robust performance for classifying hospitalized patients as positive or negative for OUD, with the best performing feature set and model combination achieving an F1 score of 0.97. These results show promise for the future development of a real-time tool for quickly and accurately identifying patients with OUD in the hospital setting. ©2020 AMIA - All rights reserved.

Entities:  

Year:  2021        PMID: 33936395      PMCID: PMC8075424     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  23 in total

1.  Using Anchors to Estimate Clinical State without Labeled Data.

Authors:  Yoni Halpern; Youngduck Choi; Steven Horng; David Sontag
Journal:  AMIA Annu Symp Proc       Date:  2014-11-14

2.  Toward a clinical text encoder: pretraining for clinical natural language processing with applications to substance misuse.

Authors:  Dmitriy Dligach; Majid Afshar; Timothy Miller
Journal:  J Am Med Inform Assoc       Date:  2019-11-01       Impact factor: 4.497

3.  Development of machine learning algorithms for prediction of prolonged opioid prescription after surgery for lumbar disc herniation.

Authors:  Aditya V Karhade; Paul T Ogink; Quirina C B S Thio; Thomas D Cha; William B Gormley; Stuart H Hershman; Timothy R Smith; Jianren Mao; Andrew J Schoenfeld; Christopher M Bono; Joseph H Schwab
Journal:  Spine J       Date:  2019-06-09       Impact factor: 4.166

4.  Hospital Readmission and Social Risk Factors Identified from Physician Notes.

Authors:  Amol S Navathe; Feiran Zhong; Victor J Lei; Frank Y Chang; Margarita Sordo; Maxim Topaz; Shamkant B Navathe; Roberto A Rocha; Li Zhou
Journal:  Health Serv Res       Date:  2017-03-13       Impact factor: 3.402

5.  Automated identification of wound information in clinical notes of patients with heart diseases: Developing and validating a natural language processing application.

Authors:  Maxim Topaz; Kenneth Lai; Dawn Dowding; Victor J Lei; Anna Zisberg; Kathryn H Bowles; Li Zhou
Journal:  Int J Nurs Stud       Date:  2016-09-19       Impact factor: 5.837

6.  Studying Associations Between Heart Failure Self-Management and Rehospitalizations Using Natural Language Processing.

Authors:  Maxim Topaz; Kavita Radhakrishnan; Suzanne Blackley; Victor Lei; Kenneth Lai; Li Zhou
Journal:  West J Nurs Res       Date:  2016-09-25       Impact factor: 1.967

7.  An evaluation of a natural language processing tool for identifying and encoding allergy information in emergency department clinical notes.

Authors:  Foster R Goss; Joseph M Plasek; Jason J Lau; Diane L Seger; Frank Y Chang; Li Zhou
Journal:  AMIA Annu Symp Proc       Date:  2014-11-14

Review 8.  Are Prescription Opioids Driving the Opioid Crisis? Assumptions vs Facts.

Authors:  Mark Edmund Rose
Journal:  Pain Med       Date:  2018-04-01       Impact factor: 3.750

Review 9.  Prediction Score for Anticoagulation Control Quality Among Older Adults.

Authors:  Kueiyu Joshua Lin; Daniel E Singer; Robert J Glynn; Suzanne Blackley; Li Zhou; Jun Liu; Gina Dube; Lynn B Oertel; Sebastian Schneeweiss
Journal:  J Am Heart Assoc       Date:  2017-10-05       Impact factor: 5.501

10.  Identifying Opioid Use Disorder in the Emergency Department: Multi-System Electronic Health Record-Based Computable Phenotype Derivation and Validation Study.

Authors:  David Chartash; Hyung Paek; James D Dziura; Bill K Ross; Daniel P Nogee; Eric Boccio; Cory Hines; Aaron M Schott; Molly M Jeffery; Mehul D Patel; Timothy F Platts-Mills; Osama Ahmed; Cynthia Brandt; Katherine Couturier; Edward Melnick
Journal:  JMIR Med Inform       Date:  2019-10-31
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  1 in total

1.  Natural Language Processing and Machine Learning to Identify People Who Inject Drugs in Electronic Health Records.

Authors:  David Goodman-Meza; Amber Tang; Babak Aryanfar; Sergio Vazquez; Adam J Gordon; Michihiko Goto; Matthew Bidwell Goetz; Steven Shoptaw; Alex A T Bui
Journal:  Open Forum Infect Dis       Date:  2022-09-12       Impact factor: 4.423

  1 in total

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