Literature DB >> 33936250

Spontaneous Formation of β-sheet Nano-barrels during the Early Aggregation of Alzheimer's Amyloid Beta.

Yunxiang Sun1,2, Aleksandr Kakinen3, Xulin Wan4, Niamh Moriarty5, Cameron P J Hunt5, Yuhuan Li6,7, Nicholas Andrikopoulos7, Aparna Nandakumar7, Thomas P Davis3,7, Clare L Parish5, Yang Song8,9, Pu Chun Ke3,7, Feng Ding2.   

Abstract

Soluble low-molecular-weight oligomers formed during the early aggregation of amyloid peptides have been hypothesized as a major toxic species of amyloidogenesis. Herein, we performed the first synergic in silico, in vitro and in vivo validations of the structure, dynamics and toxicity of Aβ42 oligomers. Aβ peptides readily assembled into β-rich oligomers comprised of extended β-hairpins and β-strands. Nanosized β-barrels were observed with certainty with simulations, transmission electron microscopy and Fourier transform infrared spectroscopy, corroborated by immunohistochemistry, cell viability, apoptosis, inflammation, autophagy and animal behavior assays. Secondary and tertiary structural proprieties of these oligomers, such as the sequence regions with high β-sheet propensities and inter-residue contact frequency patterns, were similar to the properties known for Aβ fibrils. The unambiguous spontaneous formation of β-barrels in the early aggregation of Aβ42 supports their roles as the common toxic intermediates in Alzheimer's pathobiology and a target for Alzheimer's therapeutics.

Entities:  

Keywords:  Alzheimer’s disease; Aβ aggregation; discrete molecular dynamics simulation; oligomer; β-barrel

Year:  2021        PMID: 33936250      PMCID: PMC8081394          DOI: 10.1016/j.nantod.2021.101125

Source DB:  PubMed          Journal:  Nano Today        ISSN: 1748-0132            Impact factor:   18.962


  94 in total

1.  Atomic Resolution Structure of Monomorphic Aβ42 Amyloid Fibrils.

Authors:  Michael T Colvin; Robert Silvers; Qing Zhe Ni; Thach V Can; Ivan Sergeyev; Melanie Rosay; Kevin J Donovan; Brian Michael; Joseph Wall; Sara Linse; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2016-07-14       Impact factor: 15.419

2.  The Tottori (D7N) and English (H6R) familial Alzheimer disease mutations accelerate Abeta fibril formation without increasing protofibril formation.

Authors:  Yukiko Hori; Tadafumi Hashimoto; Yosuke Wakutani; Katsuya Urakami; Kenji Nakashima; Margaret M Condron; Satoshi Tsubuki; Takaomi C Saido; David B Teplow; Takeshi Iwatsubo
Journal:  J Biol Chem       Date:  2006-12-14       Impact factor: 5.157

3.  Cysteine to Serine Conversion at 111th Position Renders the Disaggregation and Retains the Stabilization of Detrimental SOD1 A4V Mutant Against Amyotrophic Lateral Sclerosis in Human-A Discrete Molecular Dynamics Study.

Authors:  E Srinivasan; R Rajasekaran
Journal:  Cell Biochem Biophys       Date:  2017-09-26       Impact factor: 2.194

Review 4.  A new era for understanding amyloid structures and disease.

Authors:  Matthew G Iadanza; Matthew P Jackson; Eric W Hewitt; Neil A Ranson; Sheena E Radford
Journal:  Nat Rev Mol Cell Biol       Date:  2018-12       Impact factor: 94.444

5.  Graphene quantum dots rescue protein dysregulation of pancreatic β-cells exposed to human islet amyloid polypeptide.

Authors:  Ava Faridi; Yunxiang Sun; Monika Mortimer; Ritchlynn R Aranha; Aparna Nandakumar; Yuhuan Li; Ibrahim Javed; Aleksandr Kakinen; Qingqing Fan; Anthony W Purcell; Thomas P Davis; Feng Ding; Pouya Faridi; Pu Chun Ke
Journal:  Nano Res       Date:  2019-09-26       Impact factor: 8.897

6.  Sclerotiorin Stabilizes the Assembly of Nonfibrillar Abeta42 Oligomers with Low Toxicity, Seeding Activity, and Beta-sheet Content.

Authors:  Thomas Wiglenda; Nicole Groenke; Waldemar Hoffmann; Christian Manz; Lisa Diez; Alexander Buntru; Lydia Brusendorf; Nancy Neuendorf; Sigrid Schnoegl; Christian Haenig; Peter Schmieder; Kevin Pagel; Erich E Wanker
Journal:  J Mol Biol       Date:  2020-02-13       Impact factor: 5.469

7.  Structure-neurotoxicity relationships of amyloid beta-protein oligomers.

Authors:  Kenjiro Ono; Margaret M Condron; David B Teplow
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-12       Impact factor: 11.205

8.  Aβ(1-42) fibril structure illuminates self-recognition and replication of amyloid in Alzheimer's disease.

Authors:  Yiling Xiao; Buyong Ma; Dan McElheny; Sudhakar Parthasarathy; Fei Long; Minako Hoshi; Ruth Nussinov; Yoshitaka Ishii
Journal:  Nat Struct Mol Biol       Date:  2015-05-04       Impact factor: 15.369

9.  Common molecular mechanism of amyloid pore formation by Alzheimer's β-amyloid peptide and α-synuclein.

Authors:  Coralie Di Scala; Nouara Yahi; Sonia Boutemeur; Alessandra Flores; Léa Rodriguez; Henri Chahinian; Jacques Fantini
Journal:  Sci Rep       Date:  2016-06-29       Impact factor: 4.379

10.  β-barrel Oligomers as Common Intermediates of Peptides Self-Assembling into Cross-β Aggregates.

Authors:  Yunxiang Sun; Xinwei Ge; Yanting Xing; Bo Wang; Feng Ding
Journal:  Sci Rep       Date:  2018-07-09       Impact factor: 4.379

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  7 in total

1.  Impact of Electronic Polarization on Preformed, β-Strand Rich Homogenous and Heterogenous Amyloid Oligomers.

Authors:  Kelsie M King; Amanda K Sharp; Darcy S Davidson; Anne M Brown; Justin A Lemkul
Journal:  J Comput Biophys Chem       Date:  2021-12-29

2.  Molecular Insights into the Self-Assembly of Block Copolymer Suckerin Polypeptides into Nanoconfined β-Sheets.

Authors:  Yuying Liu; Ying Wang; Chaohui Tong; Guanghong Wei; Feng Ding; Yunxiang Sun
Journal:  Small       Date:  2022-07-28       Impact factor: 15.153

3.  Inhibition of Amyloid Aggregation and Toxicity with Janus Iron Oxide Nanoparticles.

Authors:  Nicholas Andrikopoulos; Zhiyuan Song; Xulin Wan; Alon M Douek; Ibrahim Javed; Changkui Fu; Yanting Xing; Fangyun Xin; Yuhuan Li; Aleksandr Kakinen; Kairi Koppel; Ruirui Qiao; Andrew K Whittaker; Jan Kaslin; Thomas P Davis; Yang Song; Feng Ding; Pu Chun Ke
Journal:  Chem Mater       Date:  2021-08-03       Impact factor: 10.508

4.  Hydrophobic/Hydrophilic Ratio of Amphiphilic Helix Mimetics Determines the Effects on Islet Amyloid Polypeptide Aggregation.

Authors:  Huayuan Tang; Yunxiang Sun; Feng Ding
Journal:  J Chem Inf Model       Date:  2022-03-21       Impact factor: 6.162

5.  Graphene quantum dots obstruct the membrane axis of Alzheimer's amyloid beta.

Authors:  Huayuan Tang; Yuhuan Li; Aleksandr Kakinen; Nicholas Andrikopoulos; Yunxiang Sun; Eunbi Kwak; Thomas P Davis; Feng Ding; Pu Chun Ke
Journal:  Phys Chem Chem Phys       Date:  2021-12-22       Impact factor: 3.676

Review 6.  β-Barrels and Amyloids: Structural Transitions, Biological Functions, and Pathogenesis.

Authors:  Anna I Sulatskaya; Anastasiia O Kosolapova; Alexander G Bobylev; Mikhail V Belousov; Kirill S Antonets; Maksim I Sulatsky; Irina M Kuznetsova; Konstantin K Turoverov; Olesya V Stepanenko; Anton A Nizhnikov
Journal:  Int J Mol Sci       Date:  2021-10-20       Impact factor: 5.923

7.  Ultrasmall Molybdenum Disulfide Quantum Dots Cage Alzheimer's Amyloid Beta to Restore Membrane Fluidity.

Authors:  Yuhuan Li; Huayuan Tang; Houjuan Zhu; Aleksandr Kakinen; Di Wang; Nicholas Andrikopoulos; Yunxiang Sun; Aparna Nandakumar; Eunbi Kwak; Thomas P Davis; David Tai Leong; Feng Ding; Pu Chun Ke
Journal:  ACS Appl Mater Interfaces       Date:  2021-06-18       Impact factor: 10.383

  7 in total

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