| Literature DB >> 33930140 |
Jorge Moreda-Piñeiro1, José A Cocho2, María Luz Couce2, Antonio Moreda-Piñeiro3, Pilar Bermejo-Barrera3.
Abstract
Trace elements in dried blood spots (DBSs) from newborns were determined by laser ablation coupled with inductively coupled plasma mass spectrometry, and data were subjected to chemometric evaluation in an attempt to classify healthy newborns and newborns suffering from metabolic disorders. Unsupervised [principal component analysis (PCA) and cluster analysis (CA)] and supervised [linear discriminant analysis (LDA) and soft independent modeling by class analogy (SIMCA)] pattern recognition techniques were used as classification techniques. PCA and CA have shown a clear tendency to form two groups (healthy newborns and newborns suffering from metabolic disorders). LDA and SIMCA have predicted that 90.5% and 83.9% of originally grouped healthy newborn cases were correctly classified by LDA and SIMCA, respectively. In addition, these percentages were 97.6% (LDA) and 80.6% (SIMCA) for DBSs from newborns suffering from metabolic disorders. However, SIMCA has only detected one misclassified DBS from the healthy group, and the lower percentage is attributed to four DBSs from the healthy newborn group and five DBSs from newborns with disorders that were found as belonging to both categories (healthy newborns and newborns with disorders) in the training set. LDA also gave a percentage of grouped maple syrup urine disease (MSUD) cases correctly classified of 100%, although the percentage fells to 66.7% when classifying phenylketonuria (PKU) cases. Finally, essential elements such as Fe, K, Rb, and Zn were found to be matched (correlated) with the concentration of amino acids such as phenylalanine, valine, and leucine, biomarkers linked with MSUD and PKU diseases.Entities:
Keywords: classification; dried blood spot; metabolic disorders; multi-element determinations; newborns; pattern recognition techniques
Mesh:
Substances:
Year: 2021 PMID: 33930140 PMCID: PMC8755940 DOI: 10.1093/mtomcs/mfab018
Source DB: PubMed Journal: Metallomics ISSN: 1756-5901 Impact factor: 4.526
Fig. 1Circular filter paper disks (3 mm) with DBSs from different real samples and reconstituted Seronorm CRMs.
Element concentrations expressed as mg l−1 in several DBSs from newborns along with statistical results
| Average | Median | RSD (%) | 25th percentile | 75th percentile | Range | Skewness value | Kurtosis value | |
|---|---|---|---|---|---|---|---|---|
| All newborns (84 DBSs) | ||||||||
| Ca | 16.8 | 13.1 | 30.7 | 13.1 | 20.6 | 22.6 | 5.8 | 4.6 |
| Cu | 1.2 | 1.1 | 73.1 | 0.87 | 1.3 | 7.9 | 24.4 | 94.8 |
| Fe | 703.7 | 675.3 | 28.2 | 570.0 | 822.9 | 1053 | 3.8 | 2.8 |
| K | 3023 | 2943 | 29.7 | 2302 | 3699 | 4128 | 2.5 | 0.40 |
| Mg | 59.3 | 31.1 | 117.4 | 24.1 | 71.4 | 416.6 | 10.4 | 17.2 |
| Na | 2511 | 2506 | 19.9 | 2186 | 2811 | 2547 | 0.66 | 0.66 |
| P | 491.6 | 478.3 | 21.7 | 417.1 | 549.6 | 533.1 | 1.5 | 0.55 |
| Pb | 27.0[ | 17.9[ | 126.6[ | 7.0[ | 30.2[ | 219.9[ | 14.3 | 32.5 |
| Rb | 2.8 | 3.0 | 48.9 | 1.5 | 3.7 | 5.7 | 0.26 | −1.4 |
| Sb | 10.3[ | 3.1[ | 228.7[ | 1.6[ | 6.9[ | 167.9[ | 18.9 | 54.8 |
| Sr | 17.5[ | 15.4[ | 179.0[ | 8.4[ | 18.5[ | 289.4[ | 31.2 | 138.4 |
| Zn | 4.8 | 4.7 | 47.0 | 3.1 | 5.9 | 11.5 | 3.9 | 2.8 |
| Healthy newborns (42 DBSs) | ||||||||
| Ca | 13.2 | 13.1 | 3.5 | 13.1 | 13.1 | 2.3 | 11.8 | 25.4 |
| Cu | 0.93 | 0.89 | 18.4 | 0.81 | 1.0 | 0.70 | 1.9 | −0.13 |
| Fe | 845.5 | 825.3 | 21.2 | 732.1 | 888.4 | 896.4 | 3.1 | 2.6 |
| K | 3697 | 3726 | 20.7 | 3317 | 3922 | 4126 | 0.84 | 1.9 |
| Mg | 78.2 | 64.4 | 103.2 | 21.0 | 90.0 | 416.6 | 5.7 | 7.7 |
| Na | 2380 | 2446 | 20.6 | 2091 | 2715 | 1895 | −0.73 | −0.57 |
| P | 544.6 | 538 | 19.6 | 461.4 | 658.9 | 421.4 | 1.1 | −0.99 |
| Pb | 19.9[ | 8.8[ | 180.0[ | 7.0[ | 16.6[ | 219.9[ | 14.3 | 42.3 |
| Rb | 3.8 | 3.7 | 26.1 | 3.3 | 4.5 | 5.4 | −0.66 | 1.5 |
| Sb | 8.7[ | 4.4[ | 132.4[ | 1.6[ | 9.5[ | 43.2[ | 6.0 | 5.9 |
| Sr | 12.0[ | 12.9[ | 51.8[ | 6.2[ | 17.2[ | 18.6[ | −0.16 | −1.8 |
| Zn | 3.4 | 3.0 | 50.8 | 2.3 | 3.7 | 9.4 | 5.9 | 7.6 |
| Newborns suffering from metabolic disorders (42 DBSs) | ||||||||
| Ca | 20.0 | 20.4 | 26.6 | 16.0 | 22.7 | 22.6 | 1.5 | 1.9 |
| Cu | 1.5 | 1.2 | 78.2 | 1.1 | 1.4 | 7.8 | 13.2 | 37.7 |
| Fe | 574.9 | 576.5 | 18.4 | 491.4 | 630.4 | 481.7 | 0.50 | −0.28 |
| K | 2411 | 2327 | 19.2 | 2120 | 2602 | 1915 | 1.9 | 0.33 |
| Mg | 42.2 | 28.7 | 126.0 | 24.8 | 32.8 | 246.1 | 11.4 | 24.4 |
| Na | 2630 | 2534 | 18.5 | 2374 | 2894 | 2178 | 1.8 | 0.66 |
| P | 443.3 | 464.8 | 18.4 | 389.7 | 500.0 | 339.5 | −1.5 | −0.019 |
| Pb | 33.4[ | 25.0[ | 94.6[ | 17.7[ | 37.3[ | 152.5[ | 7.4 | 11.7 |
| Rb | 1.9 | 1.6 | 53.8 | 1.1 | 2.7 | 4.0 | 1.5 | −0.75 |
| Sb | 11.7[ | 2.4[ | 261.5[ | 1.6[ | 6.3[ | 167.9[ | 10.9 | 23.7 |
| Sr | 22.6[ | 16.7[ | 188.4[ | 11.9[ | 19.7[ | 289.4[ | 16.1 | 51.1 |
| Zn | 6.1 | 5.7 | 31.1 | 5.0 | 6.8 | 9.8 | 4.2 | 5.7 |
aValues expressed as µg l−1.
Analysis of variance of target elements for several DBSs from newborns with and without metabolic disorders
| Sum of squares | Degrees of freedom | Mean square | F-ratio |
| ||
|---|---|---|---|---|---|---|
| K | Between groups | 3.5 × 1013 | 1 | 3.5 × 1013 | 89.5 | 0.0000 |
| Within groups | 3.2 × 1013 | 82 | 3.9 × 1011 | |||
| Na | Between groups | 1.3 × 1012 | 1 | 1.3 × 1012 | 5.4 | 0.0210 |
| Within groups | 2.0 × 1013 | 82 | 2.4 × 1011 | |||
| P | Between groups | 2.1 × 1011 | 1 | 2.1 × 1011 | 24.2 | 0.0000 |
| Within groups | 7.3 × 1011 | 82 | 8.9 × 109 | |||
| Rb | Between groups | 7.3 × 107 | 1 | 7.3 × 107 | 70.4 | 0.0000 |
| Within groups | 8.5 × 107 | 82 | 1.0 × 106 |
Factor loadings for elements, after a normalized Varimax rotation for the first three principal components
| Loadings | |||
|---|---|---|---|
| PC1 | PC2 | PC3 | |
| Na | −0.03231 | +0.04322 | +0.3775 |
| Mg | +0.07581 | +0.0008784 | +0.04069 |
| P | +0.1122 | −0.05501 | +0.001388 |
| K | +0.4121 | −0.06277 | −0.01065 |
| Ca | −0.2099 | +0.07860 | +0.09837 |
| Fe | +0.3490 | +0.001588 | −0.03645 |
| Cu | −0.006707 | +0.03029 | +0.03622 |
| Zn | −0.06101 | +0.3742 | +0.04430 |
| Rb | +0.3774 | −0.08134 | −0.0006126 |
| Sr | −0.02813 | +0.001445 | −0.003068 |
| Sb | −0.007340 | −0.004403 | +0.007462 |
| Pb | +0.0002377 | +0.02193 | +0.02289 |
Fig. 23D plot of factor loadings for 12 target elements.
Fig. 33D plots of scores for 84 DBS samples: healthy newborns (H) and newborns with metabolic disorders (PUK, MSUD, and O for phenylketonuria, maple syrup urine disease, and others diseases, respectively).
Fig. 4Dendrogram of cluster analysis for 12 target elements.
Fig. 5Dendrogram of cluster analysis of 84 DBS samples: healthy newborns (H) and newborns with metabolic disorders (PUK, MSUD, and O for phenylketonuria, maple syrup urine disease, and others diseases, respectively).
Classification of DBS samples results into two groups (healthy newborns and newborns suffering from metabolic disorders) after LDA
| Predicted group membership | ||||
|---|---|---|---|---|
| Actual group | No. of cases | % Classification | Group H (healthy) | Group D (metabolic disorders) |
| Group H (healthy) | 42 | 90.48 | 38 | 4 |
| Group D (metabolic disorders) | 42 | 97.62 | 1 | 41 |
| Total | 84 | 94.05 | 39 | 45 |
Classification of DBS samples results into four groups (healthy newborns and newborns suffering from MSUD, PKU, and other metabolic disorders) after LDA
| Predicted group membership | ||||||
|---|---|---|---|---|---|---|
| Actual group | No. of cases | % Classification | Group H (healthy) | Group M (MSUD) | Group P (PKU) | Group O (other metabolic disorders) |
| Group H (healthy) | 42 | 90.48 | 38 | 2 | 2 | 0 |
| Group M (MSUD) | 11 | 100 | 0 | 11 | 0 | 0 |
| Group P (PKU) | 18 | 66.67 | 0 | 2 | 12 | 4 |
| Group O (other metabolic disorders) | 13 | 61.54 | 1 | 2 | 2 | 8 |
| Total | 84 | 82.1 | 39 | 17 | 16 | 12 |
First discriminant function: 0.06068 [Na] + 0.2366 [Mg] + 0.3874 [P] − 0.05671 [K] − 0.6226 [Ca] + 0.4602 [Fe] − 0.1815 [Cu] − 0.4561 [Zn] + 0.1722 [Rb] + 0.1606 [Sr] + 0.006083 [Sb] − 0.08971 [Pb].
Second discriminant function: + 0.2184 [Na] − 0.1143 [Mg] − 0.3685 [P] − 0.5551 [K] + 0.6681 [Ca] + 0.3973 [Fe] + 0.1715 [Cu] − 0.2173 [Zn] + 1.110 [Rb] + 0.07819 [Sr] + 0.09159 [Sb] − 0.3596 [Pb].
Classification of DBS samples results into two groups (healthy newborns and newborns suffering from metabolic disorders) after SIMCA
| Predicted group membership | ||||
|---|---|---|---|---|
| Actual group | No. of cases | % Classification | Group H (healthy) | Group D (metabolic disorders) |
| Training set | ||||
| Group H (healthy) | 31 | 83.87 | 30 | 5[ |
| Group D (metabolic disorders) | 31 | 80.65 | 31 | 5[ |
| Prediction set | ||||
| Group H (healthy) | 11 | 81.82 | 11 | 2[ |
| Group D (metabolic disorders) | 11 | 90.91 | 10[ | 0 |
aFour cases as belonging to Group H and Group D, and one misclassified case.
bFive cases as belonging to Group H and Group D.
cTwo cases as belonging to Group H and Group D.
dOne case identified as a new class.